Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46675 * 2 1 4 4 C 1.52993 * 109.47250 * 239.99239 * 2 1 3 5 5 N 1.46903 * 109.47220 * 65.00362 * 4 2 1 6 6 C 1.46899 * 111.00334 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47257 * 174.69916 * 6 5 4 8 8 C 1.50709 * 115.54570 * 65.16976 * 7 6 5 9 9 H 1.07997 * 120.00060 * 264.95936 * 8 7 6 10 10 C 1.37877 * 119.99914 * 84.96544 * 8 7 6 11 11 N 1.31510 * 120.00024 * 353.06093 * 10 8 7 12 12 Si 1.86801 * 119.99594 * 173.05890 * 10 8 7 13 13 H 1.48494 * 109.47492 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46807 * 120.00236 * 12 10 8 15 15 H 1.48501 * 109.46975 * 239.99600 * 12 10 8 16 16 C 1.52993 * 117.50056 * 279.50151 * 7 6 5 17 17 C 1.53000 * 117.50084 * 210.83674 * 7 6 5 18 18 C 1.53006 * 109.46417 * 119.99278 * 2 1 3 19 19 N 1.46894 * 109.47522 * 294.99835 * 18 2 1 20 20 C 1.46902 * 111.00143 * 170.00336 * 19 18 2 21 21 C 1.46897 * 111.00437 * 293.96019 * 19 18 2 22 22 H 1.08993 * 109.47173 * 300.00652 * 1 2 3 23 23 H 1.09001 * 109.46558 * 60.00330 * 1 2 3 24 24 H 1.08995 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47519 * 305.00065 * 4 2 1 26 26 H 1.09002 * 109.46827 * 184.99939 * 4 2 1 27 27 H 1.00897 * 110.99622 * 56.04235 * 5 4 2 28 28 H 1.09002 * 109.46563 * 294.70200 * 6 5 4 29 29 H 1.09000 * 109.46789 * 54.69466 * 6 5 4 30 30 H 0.96997 * 119.99658 * 185.03427 * 11 10 8 31 31 H 1.08999 * 117.49896 * 359.97438 * 16 7 6 32 32 H 1.08995 * 117.50183 * 145.02307 * 16 7 6 33 33 H 1.08992 * 117.50013 * 214.98421 * 17 7 6 34 34 H 1.08995 * 117.49435 * 359.97438 * 17 7 6 35 35 H 1.08996 * 109.47016 * 55.00789 * 18 2 1 36 36 H 1.09001 * 109.46626 * 174.99775 * 18 2 1 37 37 H 1.08996 * 109.46680 * 60.00478 * 20 19 18 38 38 H 1.08996 * 109.47199 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.46710 * 300.00159 * 20 19 18 40 40 H 1.09008 * 109.47168 * 59.99404 * 21 19 18 41 41 H 1.08994 * 109.47394 * 179.97438 * 21 19 18 42 42 H 1.09006 * 109.47157 * 300.00295 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6516 0.0372 -2.4456 6 6 2.1260 -0.6269 -3.6671 7 6 1.5919 0.1173 -4.8925 8 6 2.1022 1.5240 -5.0721 9 1 1.5279 2.3586 -4.6982 10 6 3.3023 1.7452 -5.7139 11 7 4.0666 0.7285 -6.0478 12 14 3.8423 3.4892 -6.1092 13 1 2.8124 4.4466 -5.6319 14 1 5.1330 3.7732 -5.4320 15 1 4.0113 3.6343 -7.5774 16 6 0.1527 -0.1724 -5.3232 17 6 1.3226 -0.7032 -6.1555 18 6 2.0399 -0.7212 1.2494 19 7 1.6513 0.0376 2.4457 20 6 1.9123 -0.7354 3.6673 21 6 2.3340 1.3376 2.4895 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6055 -1.7199 -1.2949 26 1 3.1264 -0.7995 -1.2053 27 1 1.9883 0.9870 -2.3967 28 1 3.2158 -0.6201 -3.6843 29 1 1.7687 -1.6565 -3.6829 30 1 4.9428 0.8864 -6.4328 31 1 -0.4136 -0.8935 -4.7338 32 1 -0.4250 0.6541 -5.7369 33 1 1.5142 -0.2255 -7.1163 34 1 1.5264 -1.7730 -6.1135 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7994 1.2058 37 1 2.9755 -0.9669 3.7304 38 1 1.6152 -0.1506 4.5378 39 1 1.3395 -1.6624 3.6399 40 1 2.0678 1.9177 1.6058 41 1 2.0279 1.8788 3.3847 42 1 3.4126 1.1811 2.5099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = 0.924916 kcal Electronic energy + Delta-G solvation = -17682.651491 eV Core-core repulsion = 15083.303434 eV Total energy + Delta-G solvation = -2599.348056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37649 -38.54253 -36.42974 -33.97891 -33.26901 -28.47135 -28.04654 -27.74303 -27.09339 -24.67332 -22.89485 -22.56885 -21.20011 -20.51591 -17.89820 -16.76051 -16.64120 -16.57027 -16.04409 -15.95960 -15.59526 -15.09125 -14.77657 -14.41409 -14.08430 -13.39695 -13.25472 -13.13707 -13.00228 -12.92204 -12.86084 -12.66003 -12.57274 -12.50996 -12.27949 -11.98796 -11.83984 -11.65204 -11.39005 -11.19962 -10.69814 -10.38764 -9.91176 -9.26438 -9.05383 -8.07480 -6.18230 1.39365 1.43723 1.53852 2.43726 2.97075 3.20660 3.40838 3.78135 3.92406 4.17335 4.26870 4.32715 4.38630 4.48532 4.56451 4.62998 4.65120 4.70850 4.75152 4.78603 4.83169 4.93241 5.00584 5.03218 5.04260 5.06527 5.08468 5.16993 5.30505 5.36142 5.47640 5.62940 5.68491 5.71019 5.82129 6.07914 6.14988 6.40712 6.50745 6.68520 6.91355 7.49784 9.00183 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.005257 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.967309 B = 5325.124581 C = 5933.792297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 H 0.061 0.939 4 C 0.066 3.934 5 N -0.673 5.673 6 C 0.121 3.879 7 C 0.026 3.974 8 C -0.500 4.500 9 H 0.053 0.947 10 C 0.025 3.975 11 N -0.910 5.910 12 Si 0.946 3.054 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.285 1.285 16 C -0.176 4.176 17 C -0.170 4.170 18 C 0.066 3.934 19 N -0.554 5.554 20 C 0.024 3.976 21 C 0.020 3.980 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.011 0.989 27 H 0.338 0.662 28 H 0.001 0.999 29 H 0.045 0.955 30 H 0.258 0.742 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 -2.421 16.026 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.064 4.064 5 N -0.303 5.303 6 C -0.009 4.009 7 C 0.025 3.975 8 C -0.538 4.538 9 H 0.071 0.929 10 C -0.175 4.175 11 N -0.548 5.548 12 Si 0.773 3.227 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.211 1.211 16 C -0.214 4.214 17 C -0.208 4.208 18 C -0.062 4.062 19 N -0.278 5.278 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.155 0.845 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.244 -2.667 15.836 16.611 hybrid contribution 2.547 0.795 -0.626 2.741 sum -1.697 -1.872 15.211 15.419 Atomic orbital electron populations 1.21460 0.93703 1.01188 1.00983 1.21034 0.97596 0.98884 0.92021 0.92017 1.21968 0.96318 0.97903 0.90183 1.60406 1.63485 1.05735 1.00712 1.21148 0.95053 0.95035 0.89638 1.18903 0.93109 0.94354 0.91091 1.20721 1.05413 0.91382 1.36279 0.92910 1.25650 0.96973 0.99814 0.95029 1.70108 1.09681 1.31486 1.43506 0.85687 0.78068 0.81328 0.77647 1.19097 1.20851 1.21132 1.22829 0.91952 1.02191 1.04398 1.22456 1.04352 0.97447 0.96518 1.22079 0.97316 0.97458 0.89379 1.61947 1.58489 1.04640 1.02690 1.22424 0.99235 0.98760 0.91933 1.22458 0.95864 0.91317 1.03136 0.92232 0.93545 0.93450 0.91344 0.97088 0.84459 0.98055 0.93671 0.93330 0.89644 0.91000 0.92616 0.91178 0.90148 0.95474 0.95754 0.90353 0.90851 0.91713 0.90218 0.95921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.97 71.99 0.65 -2.43 16 2 C -0.08 -2.03 2.45 -10.79 -0.03 -2.05 16 3 H 0.06 1.74 6.34 -2.39 -0.02 1.72 16 4 C 0.07 2.10 5.07 86.30 0.44 2.53 16 5 N -0.67 -26.12 5.93 -513.90 -3.04 -29.17 16 6 C 0.12 5.45 5.54 86.30 0.48 5.93 16 7 C 0.03 1.29 1.56 -52.93 -0.08 1.20 16 8 C -0.50 -26.94 8.32 25.60 0.21 -26.72 16 9 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 10 C 0.03 1.37 5.39 84.66 0.46 1.83 16 11 N -0.91 -51.93 12.95 21.45 0.28 -51.65 16 12 Si 0.95 43.24 29.55 68.60 2.03 45.26 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 16 C -0.18 -7.79 9.96 30.62 0.30 -7.49 16 17 C -0.17 -8.15 9.46 30.62 0.29 -7.86 16 18 C 0.07 1.50 4.35 86.31 0.38 1.87 16 19 N -0.55 -11.51 4.47 -948.85 -4.24 -15.75 16 20 C 0.02 0.39 9.57 127.69 1.22 1.62 16 21 C 0.02 0.40 9.33 127.69 1.19 1.59 16 22 H 0.06 1.50 7.75 -2.39 -0.02 1.48 16 23 H 0.05 1.40 7.75 -2.39 -0.02 1.39 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.34 13.97 8.30 -89.70 -0.74 13.22 16 28 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.04 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 31 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.08 1.70 8.06 -2.39 -0.02 1.69 16 36 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 37 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 39 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 40 H 0.06 1.39 6.37 -2.38 -0.02 1.37 16 41 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 42 H 0.02 0.44 8.14 -2.38 -0.02 0.42 16 Total: -1.00 -57.50 336.86 0.72 -56.77 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.20 Total: 24.52 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 5.50 Total: -29.99 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -7.01 Total: -96.57 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -57.50 0.72 -56.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.699 kcal (2) G-P(sol) polarization free energy of solvation -57.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds