Wall clock time and date at job start Mon Mar 30 2020 03:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47369 * 2 1 4 4 C 1.53005 * 109.47399 * 119.99466 * 2 1 3 5 5 N 1.46899 * 109.47057 * 295.00275 * 4 2 1 6 6 C 1.46899 * 110.99763 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46875 * 174.70475 * 6 5 4 8 8 C 1.50700 * 115.55341 * 294.92828 * 7 6 5 9 9 H 1.07990 * 120.00361 * 95.23946 * 8 7 6 10 10 C 1.37881 * 119.99408 * 275.51863 * 8 7 6 11 11 N 1.31511 * 120.00081 * 6.82896 * 10 8 7 12 12 Si 1.86802 * 119.99473 * 186.82164 * 10 8 7 13 13 H 1.48496 * 109.46981 * 90.00767 * 12 10 8 14 14 H 1.48503 * 109.47017 * 210.00260 * 12 10 8 15 15 H 1.48498 * 109.47356 * 330.00179 * 12 10 8 16 16 C 1.53002 * 117.49577 * 80.59784 * 7 6 5 17 17 C 1.53003 * 117.49755 * 149.25323 * 7 6 5 18 18 C 1.52998 * 109.47473 * 239.99370 * 2 1 3 19 19 N 1.46904 * 109.46863 * 65.00242 * 18 2 1 20 20 C 1.46900 * 111.00257 * 66.04715 * 19 18 2 21 21 C 1.46901 * 110.99960 * 190.00643 * 19 18 2 22 22 H 1.08999 * 109.47085 * 60.00670 * 1 2 3 23 23 H 1.09005 * 109.47130 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47277 * 300.00633 * 1 2 3 25 25 H 1.08993 * 109.47400 * 174.99851 * 4 2 1 26 26 H 1.09011 * 109.46666 * 54.99942 * 4 2 1 27 27 H 1.00903 * 110.99926 * 56.04564 * 5 4 2 28 28 H 1.08994 * 109.46967 * 54.71034 * 6 5 4 29 29 H 1.08999 * 109.47485 * 294.70628 * 6 5 4 30 30 H 0.97003 * 119.99630 * 179.97438 * 11 10 8 31 31 H 1.09011 * 117.49555 * 215.00224 * 16 7 6 32 32 H 1.09001 * 117.50028 * 0.02562 * 16 7 6 33 33 H 1.09007 * 117.49783 * 359.97438 * 17 7 6 34 34 H 1.08995 * 117.49633 * 144.97567 * 17 7 6 35 35 H 1.08993 * 109.47808 * 184.99919 * 18 2 1 36 36 H 1.09001 * 109.47530 * 305.00465 * 18 2 1 37 37 H 1.09001 * 109.46657 * 59.99986 * 20 19 18 38 38 H 1.09000 * 109.47127 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.46793 * 300.00257 * 20 19 18 40 40 H 1.08998 * 109.47562 * 59.99905 * 21 19 18 41 41 H 1.09002 * 109.47161 * 179.97438 * 21 19 18 42 42 H 1.09005 * 109.46631 * 299.99124 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1248 -0.6269 3.6672 7 6 1.8182 0.2553 4.8792 8 6 2.5470 1.5736 4.9246 9 1 2.0721 2.4665 4.5458 10 6 3.8224 1.6386 5.4445 11 7 4.4543 0.5340 5.7763 12 14 4.6526 3.2957 5.6775 13 1 4.3415 3.8191 7.0318 14 1 6.1221 3.1376 5.5335 15 1 4.1543 4.2475 4.6523 16 6 0.3954 0.2150 5.4404 17 6 1.5414 -0.4452 6.2109 18 6 2.0400 -0.7214 -1.2491 19 7 1.6515 0.0373 -2.4456 20 6 2.3342 1.3372 -2.4895 21 6 1.9124 -0.7360 -3.6670 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.1263 -0.7994 1.2057 26 1 1.6053 -1.7198 1.2953 27 1 0.6528 0.1794 2.4753 28 1 3.2004 -0.7892 3.5989 29 1 1.6189 -1.5859 3.7786 30 1 5.3517 0.5797 6.1417 31 1 -0.0135 1.1421 5.8425 32 1 -0.3221 -0.4403 4.9465 33 1 1.5774 -1.5346 6.2236 34 1 1.8869 0.0472 7.1199 35 1 3.1263 -0.7996 -1.2055 36 1 1.6054 -1.7199 -1.2951 37 1 3.4127 1.1806 -2.5099 38 1 2.0281 1.8783 -3.3849 39 1 2.0679 1.9174 -1.6060 40 1 1.3396 -1.6630 -3.6396 41 1 1.6153 -0.1514 -4.5377 42 1 2.9757 -0.9676 -3.7301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:30 Heat of formation + Delta-G solvation = 20.707482 kcal Electronic energy + Delta-G solvation = -17696.769530 eV Core-core repulsion = 15098.279310 eV Total energy + Delta-G solvation = -2598.490220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.29722 -36.92674 -35.14595 -31.99827 -31.68230 -27.65688 -26.87312 -26.35786 -25.20567 -23.39649 -21.59553 -20.92250 -19.64239 -18.83826 -16.29943 -15.75525 -15.35983 -14.97041 -14.77323 -14.42102 -13.95715 -13.53208 -13.35485 -13.16509 -12.53704 -12.46128 -12.14848 -11.94085 -11.77089 -11.67733 -11.44131 -11.20324 -10.90192 -10.72171 -10.55060 -10.46903 -10.36511 -10.26606 -10.10689 -9.35146 -8.73116 -8.39243 -8.31857 -7.99696 -7.43621 -5.90418 -3.91146 3.37501 3.43997 3.48357 3.89664 4.52246 4.80003 5.07017 5.09037 5.20237 5.30687 5.39267 5.41027 5.46713 5.53024 5.55138 5.69834 5.71082 5.76435 5.87791 6.00561 6.04313 6.19985 6.27594 6.32371 6.40701 6.54748 6.57299 6.60247 6.73322 6.79468 6.95290 6.99186 7.00878 7.17078 7.52386 7.66098 8.02914 8.05914 8.27399 8.62736 9.07803 9.71497 11.19739 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.005423 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.132101 B = 5161.797361 C = 5829.635609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.081 0.919 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.107 3.893 7 C 0.053 3.947 8 C -0.467 4.467 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.888 3.112 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.274 1.274 16 C -0.216 4.216 17 C -0.161 4.161 18 C 0.060 3.940 19 N -0.545 5.545 20 C 0.020 3.980 21 C 0.025 3.975 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.015 0.985 27 H 0.330 0.670 28 H 0.075 0.925 29 H -0.008 1.008 30 H 0.256 0.744 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -3.024 -14.034 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.064 4.064 5 N -0.299 5.299 6 C -0.021 4.021 7 C 0.052 3.948 8 C -0.505 4.505 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.716 3.284 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.199 1.199 16 C -0.253 4.253 17 C -0.199 4.199 18 C -0.068 4.068 19 N -0.268 5.268 20 C -0.128 4.128 21 C -0.124 4.124 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.148 0.852 28 H 0.094 0.906 29 H 0.010 0.990 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.709 -2.580 -13.976 14.972 hybrid contribution 0.891 -0.184 0.220 0.936 sum -3.817 -2.763 -13.756 14.541 Atomic orbital electron populations 1.21712 0.94969 1.00991 1.01811 1.21163 0.96425 1.00623 0.92385 0.90027 1.21901 1.00160 0.93928 0.90455 1.60282 1.18550 1.49996 1.01037 1.21529 0.99967 0.91701 0.88924 1.18834 0.90927 0.95840 0.89167 1.20315 0.99026 0.92034 1.39161 0.92264 1.24934 0.97018 0.95953 0.95577 1.70013 1.12516 1.26287 1.43655 0.86669 0.78474 0.84904 0.78362 1.20942 1.21546 1.19886 1.22983 0.92926 1.01353 1.08030 1.22527 1.02369 0.96423 0.98558 1.22183 0.97898 0.97072 0.89678 1.61964 1.58271 1.04314 1.02272 1.22454 0.96046 0.91417 1.02899 1.22365 0.98975 0.98445 0.92590 0.91936 0.93779 0.92694 0.91689 0.96676 0.85241 0.90622 0.98985 0.93398 0.90539 0.92231 0.92209 0.90134 0.94800 0.91107 0.95719 0.91778 0.90525 0.91573 0.91615 0.95899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.85 37.15 0.33 -1.47 16 2 C -0.09 -1.22 2.51 -90.62 -0.23 -1.44 16 3 H 0.08 1.26 6.34 -51.93 -0.33 0.93 16 4 C 0.07 1.09 5.13 -3.82 -0.02 1.07 16 5 N -0.67 -13.29 6.38 -113.78 -0.73 -14.01 16 6 C 0.11 2.45 5.51 -3.82 -0.02 2.43 16 7 C 0.05 1.32 1.53 -155.66 -0.24 1.08 16 8 C -0.47 -12.90 8.73 -34.44 -0.30 -13.20 16 9 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 10 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 11 N -0.89 -25.50 12.97 55.43 0.72 -24.78 16 12 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.22 -4.76 9.96 -26.69 -0.27 -5.02 16 17 C -0.16 -3.84 9.48 -26.69 -0.25 -4.10 16 18 C 0.06 0.74 4.35 -3.82 -0.02 0.72 16 19 N -0.54 -6.24 4.47 -251.26 -1.12 -7.37 16 20 C 0.02 0.22 9.33 60.06 0.56 0.78 16 21 C 0.02 0.23 9.57 60.07 0.57 0.81 16 22 H 0.06 0.80 7.75 -51.93 -0.40 0.39 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.76 6.68 -51.93 -0.35 0.41 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 27 H 0.33 6.18 7.04 -39.29 -0.28 5.90 16 28 H 0.08 1.93 8.13 -51.93 -0.42 1.51 16 29 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 31 H 0.08 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.08 0.90 6.37 -51.93 -0.33 0.57 16 40 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -28.48 335.39 -9.06 -37.54 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.98 Total: 3.53 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 0.03 Total: -16.59 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -1.13 Total: -46.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.48 -9.06 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.247 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds