Wall clock time and date at job start Mon Mar 30 2020 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47369 * 2 1 4 4 C 1.53005 * 109.47399 * 119.99466 * 2 1 3 5 5 N 1.46899 * 109.47057 * 295.00275 * 4 2 1 6 6 C 1.46899 * 110.99763 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46875 * 174.70475 * 6 5 4 8 8 C 1.50700 * 115.55341 * 294.92828 * 7 6 5 9 9 H 1.07990 * 120.00361 * 95.23946 * 8 7 6 10 10 C 1.37881 * 119.99408 * 275.51863 * 8 7 6 11 11 N 1.31511 * 120.00081 * 6.82896 * 10 8 7 12 12 Si 1.86802 * 119.99473 * 186.82164 * 10 8 7 13 13 H 1.48496 * 109.46981 * 90.00767 * 12 10 8 14 14 H 1.48503 * 109.47017 * 210.00260 * 12 10 8 15 15 H 1.48498 * 109.47356 * 330.00179 * 12 10 8 16 16 C 1.53002 * 117.49577 * 80.59784 * 7 6 5 17 17 C 1.53003 * 117.49755 * 149.25323 * 7 6 5 18 18 C 1.52998 * 109.47473 * 239.99370 * 2 1 3 19 19 N 1.46904 * 109.46863 * 65.00242 * 18 2 1 20 20 C 1.46900 * 111.00257 * 66.04715 * 19 18 2 21 21 C 1.46901 * 110.99960 * 190.00643 * 19 18 2 22 22 H 1.08999 * 109.47085 * 60.00670 * 1 2 3 23 23 H 1.09005 * 109.47130 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47277 * 300.00633 * 1 2 3 25 25 H 1.08993 * 109.47400 * 174.99851 * 4 2 1 26 26 H 1.09011 * 109.46666 * 54.99942 * 4 2 1 27 27 H 1.00903 * 110.99926 * 56.04564 * 5 4 2 28 28 H 1.08994 * 109.46967 * 54.71034 * 6 5 4 29 29 H 1.08999 * 109.47485 * 294.70628 * 6 5 4 30 30 H 0.97003 * 119.99630 * 179.97438 * 11 10 8 31 31 H 1.09011 * 117.49555 * 215.00224 * 16 7 6 32 32 H 1.09001 * 117.50028 * 0.02562 * 16 7 6 33 33 H 1.09007 * 117.49783 * 359.97438 * 17 7 6 34 34 H 1.08995 * 117.49633 * 144.97567 * 17 7 6 35 35 H 1.08993 * 109.47808 * 184.99919 * 18 2 1 36 36 H 1.09001 * 109.47530 * 305.00465 * 18 2 1 37 37 H 1.09001 * 109.46657 * 59.99986 * 20 19 18 38 38 H 1.09000 * 109.47127 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.46793 * 300.00257 * 20 19 18 40 40 H 1.08998 * 109.47562 * 59.99905 * 21 19 18 41 41 H 1.09002 * 109.47161 * 179.97438 * 21 19 18 42 42 H 1.09005 * 109.46631 * 299.99124 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1248 -0.6269 3.6672 7 6 1.8182 0.2553 4.8792 8 6 2.5470 1.5736 4.9246 9 1 2.0721 2.4665 4.5458 10 6 3.8224 1.6386 5.4445 11 7 4.4543 0.5340 5.7763 12 14 4.6526 3.2957 5.6775 13 1 4.3415 3.8191 7.0318 14 1 6.1221 3.1376 5.5335 15 1 4.1543 4.2475 4.6523 16 6 0.3954 0.2150 5.4404 17 6 1.5414 -0.4452 6.2109 18 6 2.0400 -0.7214 -1.2491 19 7 1.6515 0.0373 -2.4456 20 6 2.3342 1.3372 -2.4895 21 6 1.9124 -0.7360 -3.6670 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.1263 -0.7994 1.2057 26 1 1.6053 -1.7198 1.2953 27 1 0.6528 0.1794 2.4753 28 1 3.2004 -0.7892 3.5989 29 1 1.6189 -1.5859 3.7786 30 1 5.3517 0.5797 6.1417 31 1 -0.0135 1.1421 5.8425 32 1 -0.3221 -0.4403 4.9465 33 1 1.5774 -1.5346 6.2236 34 1 1.8869 0.0472 7.1199 35 1 3.1263 -0.7996 -1.2055 36 1 1.6054 -1.7199 -1.2951 37 1 3.4127 1.1806 -2.5099 38 1 2.0281 1.8783 -3.3849 39 1 2.0679 1.9174 -1.6060 40 1 1.3396 -1.6630 -3.6396 41 1 1.6153 -0.1514 -4.5377 42 1 2.9757 -0.9676 -3.7301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:29 Heat of formation + Delta-G solvation = 3.059936 kcal Electronic energy + Delta-G solvation = -17697.534785 eV Core-core repulsion = 15098.279310 eV Total energy + Delta-G solvation = -2599.255475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43705 -38.57468 -36.50335 -33.93371 -33.21244 -28.46911 -28.02542 -27.84887 -27.08886 -24.83915 -22.95858 -22.50384 -21.04097 -20.51887 -18.10468 -17.11712 -16.56076 -16.36002 -16.16934 -15.83115 -15.41109 -15.05978 -14.78133 -14.68258 -13.94816 -13.48769 -13.39608 -13.22198 -13.08009 -12.87109 -12.82038 -12.58023 -12.55706 -12.54537 -12.34377 -12.00880 -11.78194 -11.69191 -11.41288 -11.20163 -10.71970 -10.35885 -9.90341 -9.27899 -9.01843 -8.02744 -6.08482 1.42811 1.44183 1.53688 2.48686 2.96366 3.27366 3.39403 3.69465 3.98523 4.11897 4.18584 4.32826 4.38884 4.48576 4.54285 4.56521 4.63871 4.65257 4.72255 4.79105 4.81130 4.84893 4.91636 5.00182 5.02738 5.06668 5.08133 5.09333 5.22466 5.28935 5.45975 5.52051 5.64995 5.76764 5.89628 6.06704 6.14953 6.39339 6.53969 6.79702 6.95010 7.56531 9.06562 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.005423 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.132101 B = 5161.797361 C = 5829.635609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 H 0.065 0.935 4 C 0.069 3.931 5 N -0.679 5.679 6 C 0.122 3.878 7 C 0.024 3.976 8 C -0.479 4.479 9 H 0.047 0.953 10 C 0.021 3.979 11 N -0.913 5.913 12 Si 0.944 3.056 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.272 1.272 16 C -0.187 4.187 17 C -0.168 4.168 18 C 0.066 3.934 19 N -0.552 5.552 20 C 0.020 3.980 21 C 0.024 3.976 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.028 0.972 27 H 0.338 0.662 28 H 0.040 0.960 29 H 0.005 0.995 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 -3.095 -15.321 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.060 4.060 5 N -0.311 5.311 6 C -0.007 4.007 7 C 0.023 3.977 8 C -0.517 4.517 9 H 0.066 0.934 10 C -0.178 4.178 11 N -0.552 5.552 12 Si 0.771 3.229 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.196 1.196 16 C -0.224 4.224 17 C -0.206 4.206 18 C -0.062 4.062 19 N -0.276 5.276 20 C -0.128 4.128 21 C -0.124 4.124 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.157 0.843 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.040 0.960 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.827 -2.645 -15.275 16.562 hybrid contribution 1.207 -0.163 0.589 1.353 sum -4.619 -2.808 -14.687 15.650 Atomic orbital electron populations 1.21633 0.93889 1.01522 1.01622 1.21040 0.97157 0.99492 0.92033 0.91708 1.21906 0.99355 0.94581 0.90200 1.60173 1.19179 1.50690 1.01030 1.21178 0.97928 0.92073 0.89508 1.18951 0.93021 0.95451 0.90251 1.20541 0.99407 0.92950 1.38772 0.93435 1.25582 0.97709 0.98848 0.95625 1.70116 1.12679 1.27887 1.44557 0.85773 0.77432 0.81344 0.78344 1.20400 1.21403 1.19626 1.22969 0.92050 1.01408 1.05947 1.22450 1.03888 0.96912 0.97357 1.22070 0.97410 0.97365 0.89388 1.61967 1.58378 1.04584 1.02676 1.22453 0.95859 0.91355 1.03098 1.22430 0.99234 0.98772 0.91950 0.91429 0.92832 0.93513 0.93278 0.95375 0.84283 0.94185 0.97696 0.93570 0.90513 0.89287 0.91089 0.92446 0.95559 0.90089 0.96042 0.90140 0.91796 0.90763 0.90313 0.95830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.85 71.98 0.64 -2.51 16 2 C -0.08 -2.11 2.51 -10.79 -0.03 -2.13 16 3 H 0.06 1.98 6.34 -2.39 -0.02 1.97 16 4 C 0.07 2.25 5.13 86.30 0.44 2.69 16 5 N -0.68 -26.62 6.38 -513.88 -3.28 -29.90 16 6 C 0.12 5.56 5.51 86.30 0.48 6.04 16 7 C 0.02 1.18 1.53 -52.92 -0.08 1.10 16 8 C -0.48 -26.57 8.73 25.60 0.22 -26.35 16 9 H 0.05 2.68 7.82 -2.92 -0.02 2.66 16 10 C 0.02 1.18 5.39 84.66 0.46 1.64 16 11 N -0.91 -53.32 12.97 21.45 0.28 -53.04 16 12 Si 0.94 44.80 29.54 68.60 2.03 46.82 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 C -0.19 -7.90 9.96 30.62 0.30 -7.60 16 17 C -0.17 -7.97 9.48 30.62 0.29 -7.68 16 18 C 0.07 1.53 4.35 86.30 0.38 1.90 16 19 N -0.55 -11.64 4.47 -948.84 -4.24 -15.88 16 20 C 0.02 0.42 9.33 127.69 1.19 1.61 16 21 C 0.02 0.39 9.57 127.69 1.22 1.62 16 22 H 0.07 1.58 7.75 -2.39 -0.02 1.57 16 23 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.05 1.21 6.68 -2.39 -0.02 1.19 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.34 12.21 7.04 -89.69 -0.63 11.58 16 28 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 29 H 0.01 0.21 8.09 -2.39 -0.02 0.19 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 34 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.03 0.64 8.12 -2.39 -0.02 0.62 16 36 H 0.08 1.71 8.06 -2.39 -0.02 1.69 16 37 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.06 1.47 6.37 -2.39 -0.02 1.45 16 40 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 41 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 42 H 0.02 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -60.14 335.39 0.62 -59.52 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.32 Total: 22.15 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 5.51 Total: -29.66 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -7.24 Total: -98.82 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -60.14 0.62 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.578 kcal (2) G-P(sol) polarization free energy of solvation -60.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds