Wall clock time and date at job start Mon Mar 30 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46570 * 2 1 4 4 C 1.50699 * 109.47204 * 119.99379 * 2 1 3 5 5 H 1.07998 * 119.99503 * 119.99922 * 4 2 1 6 6 C 1.37877 * 120.00526 * 300.00738 * 4 2 1 7 7 N 1.31517 * 119.99596 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00296 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47109 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47313 * 119.99456 * 8 6 4 11 11 H 1.48501 * 109.47030 * 239.99696 * 8 6 4 12 12 N 1.46893 * 109.47181 * 239.99934 * 2 1 3 13 13 C 1.46900 * 111.00212 * 84.99868 * 12 2 1 14 14 H 1.09003 * 109.47075 * 325.00041 * 13 12 2 15 15 C 1.52996 * 109.46974 * 84.99845 * 13 12 2 16 16 C 1.53005 * 109.47289 * 204.99966 * 13 12 2 17 17 C 1.53120 * 109.52011 * 179.97438 * 16 13 12 18 18 C 1.53045 * 109.27382 * 177.62403 * 17 16 13 19 19 N 1.46844 * 109.52143 * 300.82250 * 18 17 16 20 20 C 1.46906 * 110.99887 * 185.83959 * 19 18 17 21 21 C 1.46853 * 111.20068 * 61.74346 * 19 18 17 22 22 C 1.53033 * 109.52262 * 298.25891 * 21 19 18 23 23 H 1.09000 * 109.47273 * 300.00170 * 1 2 3 24 24 H 1.09002 * 109.47274 * 60.00366 * 1 2 3 25 25 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 26 26 H 0.97005 * 120.00009 * 180.02562 * 7 6 4 27 27 H 1.00903 * 111.00082 * 321.04583 * 12 2 1 28 28 H 1.09008 * 109.46736 * 180.02562 * 15 13 12 29 29 H 1.08998 * 109.47507 * 299.99520 * 15 13 12 30 30 H 1.08993 * 109.47461 * 60.00608 * 15 13 12 31 31 H 1.09005 * 109.51916 * 59.87512 * 16 13 12 32 32 H 1.08996 * 109.49890 * 57.68876 * 17 16 13 33 33 H 1.08989 * 109.54077 * 297.58238 * 17 16 13 34 34 H 1.09000 * 109.46052 * 180.80838 * 18 17 16 35 35 H 1.08997 * 109.46053 * 60.83727 * 18 17 16 36 36 H 1.09001 * 109.46544 * 60.00073 * 20 19 18 37 37 H 1.09001 * 109.47272 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47033 * 300.00129 * 20 19 18 39 39 H 1.09001 * 109.46125 * 58.27453 * 21 19 18 40 40 H 1.09003 * 109.46462 * 178.23846 * 21 19 18 41 41 H 1.09007 * 109.50330 * 299.23709 * 22 21 19 42 42 H 1.08999 * 109.53502 * 179.13924 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1456 -2.2874 3.6039 10 1 3.1466 -0.1871 4.8166 11 1 1.1660 -1.5865 4.8161 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9329 -2.2907 15 6 3.4110 0.9809 -2.3223 16 6 1.9770 -0.5798 -3.6454 17 6 2.0417 0.3731 -4.8422 18 6 1.9955 -0.4398 -6.1382 19 7 3.1277 -1.3744 -6.1718 20 6 3.1949 -2.0736 -7.4620 21 6 3.0611 -2.3296 -5.0584 22 6 3.1390 -1.5732 -3.7303 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7093 1.1619 3.4844 27 1 1.4495 -1.4979 -1.4100 28 1 3.4574 1.6602 -3.1736 29 1 3.4861 1.5525 -1.3973 30 1 4.2359 0.2706 -2.3786 31 1 1.0316 -1.1222 -3.6627 32 1 2.9697 0.9435 -4.8034 33 1 1.1930 1.0561 -4.8107 34 1 2.0559 0.2347 -6.9923 35 1 1.0612 -0.9994 -6.1827 36 1 3.3187 -1.3456 -8.2637 37 1 4.0425 -2.7590 -7.4601 38 1 2.2738 -2.6346 -7.6196 39 1 2.1218 -2.8804 -5.1081 40 1 3.8953 -3.0277 -5.1283 41 1 4.0842 -1.0332 -3.6740 42 1 3.0742 -2.2806 -2.9036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308822651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:41 Heat of formation + Delta-G solvation = -10.222101 kcal Electronic energy + Delta-G solvation = -18206.356709 eV Core-core repulsion = 15606.525282 eV Total energy + Delta-G solvation = -2599.831427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32317 -36.64332 -34.07808 -31.94281 -30.74367 -29.70852 -26.95504 -26.31963 -25.08801 -23.27631 -22.98941 -20.83195 -19.78594 -18.65830 -16.39276 -15.64668 -15.22201 -14.80713 -14.63023 -14.58501 -14.28657 -13.51535 -13.16895 -12.84687 -12.39979 -12.34866 -12.30481 -11.82806 -11.58496 -11.48423 -11.40771 -11.21887 -10.95121 -10.78375 -10.69716 -10.41977 -10.14523 -10.12868 -10.07263 -9.86461 -9.50499 -8.89439 -8.35715 -8.31279 -7.12978 -5.93645 -3.96210 3.34316 3.41991 3.47459 3.92685 4.47902 4.87558 4.92120 5.01078 5.12505 5.32379 5.36521 5.38187 5.47807 5.50643 5.59763 5.65788 5.71817 5.82587 5.88120 5.91942 6.13239 6.14742 6.25637 6.30529 6.39097 6.63139 6.66327 6.70779 6.75137 6.88296 6.96945 7.08656 7.10817 7.18465 7.47109 7.79395 7.96087 8.35904 8.63701 8.71412 9.11874 9.69078 11.13494 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045110 B = 0.004979 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.554518 B = 5622.064788 C = 5865.199181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.490 4.490 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.287 1.287 12 N -0.677 5.677 13 C 0.090 3.910 14 H 0.032 0.968 15 C -0.136 4.136 16 C -0.086 4.086 17 C -0.113 4.113 18 C 0.058 3.942 19 N -0.543 5.543 20 C 0.025 3.975 21 C 0.054 3.946 22 C -0.105 4.105 23 H 0.087 0.913 24 H 0.003 0.997 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.322 0.678 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -3.053 -16.696 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.529 4.529 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.307 5.307 13 C -0.020 4.020 14 H 0.050 0.950 15 C -0.194 4.194 16 C -0.105 4.105 17 C -0.151 4.151 18 C -0.070 4.070 19 N -0.268 5.268 20 C -0.123 4.123 21 C -0.074 4.074 22 C -0.142 4.142 23 H 0.106 0.894 24 H 0.022 0.978 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.139 0.861 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.027 -2.588 -16.327 16.805 hybrid contribution -1.584 -0.770 0.572 1.852 sum 1.443 -3.358 -15.755 16.173 Atomic orbital electron populations 1.22432 1.01008 0.99000 1.00321 1.19195 0.89306 0.94509 0.86715 0.94813 1.21213 1.29809 1.12259 0.89646 0.91971 1.24954 0.95442 0.95240 0.99015 1.69901 1.37592 1.23306 1.23088 0.86482 0.78464 0.79677 0.83004 1.19768 1.21204 1.21315 1.60869 1.57794 1.08782 1.03288 1.21390 0.96751 0.94152 0.89752 0.95037 1.21849 0.97691 0.99404 1.00469 1.21343 0.98297 0.96357 0.94550 1.21702 1.02588 0.97736 0.93099 1.22086 0.91153 0.95048 0.98732 1.61943 1.43372 1.18811 1.02650 1.22341 1.00206 0.98234 0.91537 1.22191 0.99839 0.93853 0.91486 1.21597 0.99269 0.98284 0.95072 0.89401 0.97773 0.95523 0.93242 0.86091 0.93718 0.92742 0.92210 0.92386 0.90492 0.91874 0.91211 0.95328 0.91655 0.91542 0.96049 0.95386 0.91112 0.90696 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.92 37.16 0.33 -3.77 16 2 C 0.21 5.30 2.38 -68.87 -0.16 5.14 16 3 H 0.03 0.94 7.11 -51.92 -0.37 0.57 16 4 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.99 11.32 55.43 0.63 -25.36 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.68 -14.16 5.38 -100.95 -0.54 -14.70 16 13 C 0.09 1.59 2.26 -67.71 -0.15 1.44 16 14 H 0.03 0.61 7.11 -51.93 -0.37 0.24 16 15 C -0.14 -2.34 8.69 37.16 0.32 -2.02 16 16 C -0.09 -1.25 1.94 -90.50 -0.18 -1.43 16 17 C -0.11 -1.43 5.09 -26.65 -0.14 -1.57 16 18 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 19 N -0.54 -6.42 4.91 -242.95 -1.19 -7.61 16 20 C 0.03 0.24 9.59 60.07 0.58 0.81 16 21 C 0.05 0.66 5.46 -3.83 -0.02 0.64 16 22 C -0.10 -1.46 4.89 -26.66 -0.13 -1.59 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 24 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 25 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.32 6.48 7.95 -39.29 -0.31 6.17 16 28 H 0.04 0.66 6.38 -51.92 -0.33 0.33 16 29 H 0.05 1.05 7.43 -51.93 -0.39 0.67 16 30 H 0.06 1.02 6.38 -51.93 -0.33 0.68 16 31 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.08 1.01 6.32 -51.93 -0.33 0.68 16 33 H 0.06 0.77 8.14 -51.94 -0.42 0.34 16 34 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.58 8.09 -51.93 -0.42 0.15 16 38 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.07 1.11 6.31 -51.93 -0.33 0.78 16 42 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -28.36 314.78 -8.97 -37.33 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.62 Total: 3.15 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 0.03 Total: -14.24 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -1.11 Total: -47.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.36 -8.97 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308822651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.112 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds