Wall clock time and date at job start Mon Mar 30 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46570 * 2 1 4 4 C 1.50699 * 109.47204 * 119.99379 * 2 1 3 5 5 H 1.07998 * 119.99503 * 119.99922 * 4 2 1 6 6 C 1.37877 * 120.00526 * 300.00738 * 4 2 1 7 7 N 1.31517 * 119.99596 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00296 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47109 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47313 * 119.99456 * 8 6 4 11 11 H 1.48501 * 109.47030 * 239.99696 * 8 6 4 12 12 N 1.46893 * 109.47181 * 239.99934 * 2 1 3 13 13 C 1.46900 * 111.00212 * 84.99868 * 12 2 1 14 14 H 1.09003 * 109.47075 * 325.00041 * 13 12 2 15 15 C 1.52996 * 109.46974 * 84.99845 * 13 12 2 16 16 C 1.53005 * 109.47289 * 204.99966 * 13 12 2 17 17 C 1.53120 * 109.52011 * 179.97438 * 16 13 12 18 18 C 1.53045 * 109.27382 * 177.62403 * 17 16 13 19 19 N 1.46844 * 109.52143 * 300.82250 * 18 17 16 20 20 C 1.46906 * 110.99887 * 185.83959 * 19 18 17 21 21 C 1.46853 * 111.20068 * 61.74346 * 19 18 17 22 22 C 1.53033 * 109.52262 * 298.25891 * 21 19 18 23 23 H 1.09000 * 109.47273 * 300.00170 * 1 2 3 24 24 H 1.09002 * 109.47274 * 60.00366 * 1 2 3 25 25 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 26 26 H 0.97005 * 120.00009 * 180.02562 * 7 6 4 27 27 H 1.00903 * 111.00082 * 321.04583 * 12 2 1 28 28 H 1.09008 * 109.46736 * 180.02562 * 15 13 12 29 29 H 1.08998 * 109.47507 * 299.99520 * 15 13 12 30 30 H 1.08993 * 109.47461 * 60.00608 * 15 13 12 31 31 H 1.09005 * 109.51916 * 59.87512 * 16 13 12 32 32 H 1.08996 * 109.49890 * 57.68876 * 17 16 13 33 33 H 1.08989 * 109.54077 * 297.58238 * 17 16 13 34 34 H 1.09000 * 109.46052 * 180.80838 * 18 17 16 35 35 H 1.08997 * 109.46053 * 60.83727 * 18 17 16 36 36 H 1.09001 * 109.46544 * 60.00073 * 20 19 18 37 37 H 1.09001 * 109.47272 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47033 * 300.00129 * 20 19 18 39 39 H 1.09001 * 109.46125 * 58.27453 * 21 19 18 40 40 H 1.09003 * 109.46462 * 178.23846 * 21 19 18 41 41 H 1.09007 * 109.50330 * 299.23709 * 22 21 19 42 42 H 1.08999 * 109.53502 * 179.13924 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1456 -2.2874 3.6039 10 1 3.1466 -0.1871 4.8166 11 1 1.1660 -1.5865 4.8161 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9329 -2.2907 15 6 3.4110 0.9809 -2.3223 16 6 1.9770 -0.5798 -3.6454 17 6 2.0417 0.3731 -4.8422 18 6 1.9955 -0.4398 -6.1382 19 7 3.1277 -1.3744 -6.1718 20 6 3.1949 -2.0736 -7.4620 21 6 3.0611 -2.3296 -5.0584 22 6 3.1390 -1.5732 -3.7303 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7093 1.1619 3.4844 27 1 1.4495 -1.4979 -1.4100 28 1 3.4574 1.6602 -3.1736 29 1 3.4861 1.5525 -1.3973 30 1 4.2359 0.2706 -2.3786 31 1 1.0316 -1.1222 -3.6627 32 1 2.9697 0.9435 -4.8034 33 1 1.1930 1.0561 -4.8107 34 1 2.0559 0.2347 -6.9923 35 1 1.0612 -0.9994 -6.1827 36 1 3.3187 -1.3456 -8.2637 37 1 4.0425 -2.7590 -7.4601 38 1 2.2738 -2.6346 -7.6196 39 1 2.1218 -2.8804 -5.1081 40 1 3.8953 -3.0277 -5.1283 41 1 4.0842 -1.0332 -3.6740 42 1 3.0742 -2.2806 -2.9036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308822651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:41 Heat of formation + Delta-G solvation = -28.546521 kcal Electronic energy + Delta-G solvation = -18207.151315 eV Core-core repulsion = 15606.525282 eV Total energy + Delta-G solvation = -2600.626034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44284 -38.10342 -35.71518 -33.69973 -31.74871 -31.21328 -28.68843 -27.38115 -27.16217 -24.42858 -24.03190 -22.29914 -21.39015 -19.92084 -18.36298 -16.89429 -16.69922 -16.26224 -15.99367 -15.72881 -15.45099 -15.00322 -14.57320 -14.30182 -13.85746 -13.62608 -13.39574 -13.26369 -13.13525 -12.96807 -12.81761 -12.60503 -12.46687 -12.42606 -12.28587 -12.11227 -11.91440 -11.66317 -11.31677 -11.16085 -11.05312 -10.81365 -10.46769 -9.22856 -8.88498 -8.07640 -6.18197 1.42109 1.43882 1.56279 2.45390 3.06770 3.20759 3.58934 3.83931 3.90374 4.06357 4.31167 4.35591 4.45492 4.51267 4.55023 4.67301 4.69642 4.75452 4.77998 4.83085 4.87714 4.94656 4.95707 5.01090 5.04854 5.08326 5.16228 5.19196 5.34060 5.38095 5.43595 5.52368 5.67259 5.71668 5.87070 6.18371 6.21620 6.31961 6.71784 6.90884 6.99924 7.52022 8.98161 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045110 B = 0.004979 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.554518 B = 5622.064788 C = 5865.199181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.509 4.509 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.677 5.677 13 C 0.090 3.910 14 H 0.017 0.983 15 C -0.129 4.129 16 C -0.077 4.077 17 C -0.109 4.109 18 C 0.060 3.940 19 N -0.555 5.555 20 C 0.025 3.975 21 C 0.060 3.940 22 C -0.100 4.100 23 H 0.060 0.940 24 H 0.021 0.979 25 H 0.030 0.970 26 H 0.259 0.741 27 H 0.328 0.672 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.028 0.972 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -3.877 -18.131 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.548 4.548 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.207 1.207 12 N -0.307 5.307 13 C -0.020 4.020 14 H 0.035 0.965 15 C -0.187 4.187 16 C -0.096 4.096 17 C -0.147 4.147 18 C -0.067 4.067 19 N -0.280 5.280 20 C -0.123 4.123 21 C -0.068 4.068 22 C -0.137 4.137 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.347 -3.419 -17.785 18.418 hybrid contribution -1.671 -0.486 0.972 1.993 sum 1.676 -3.904 -16.813 17.341 Atomic orbital electron populations 1.22239 1.00406 0.99036 0.99781 1.18929 0.89624 0.92747 0.87894 0.98148 1.21494 1.29998 1.12256 0.91071 0.92753 1.25722 0.95570 0.95911 1.01905 1.70028 1.38330 1.24397 1.23777 0.85480 0.78023 0.78612 0.79319 1.19268 1.20871 1.20675 1.60746 1.57418 1.09223 1.03308 1.21458 0.96423 0.93827 0.90264 0.96499 1.21791 0.97429 0.99463 1.00018 1.21240 0.98501 0.96445 0.93435 1.21662 1.02698 0.97490 0.92883 1.22072 0.91151 0.95141 0.98373 1.61945 1.43543 1.19084 1.03460 1.22395 1.00718 0.98612 0.90545 1.22096 1.00302 0.93776 0.90655 1.21504 0.98423 0.97852 0.95959 0.92151 0.95986 0.95040 0.93143 0.85506 0.91067 0.95761 0.92104 0.92523 0.90766 0.91300 0.89519 0.95263 0.90488 0.90827 0.95670 0.95328 0.90164 0.91546 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.64 8.92 71.98 0.64 -7.00 16 2 C 0.22 11.16 2.38 44.17 0.11 11.26 16 3 H 0.00 0.03 7.11 -2.38 -0.02 0.02 16 4 C -0.51 -28.74 8.84 25.60 0.23 -28.51 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.68 -28.56 5.38 -473.31 -2.54 -31.10 16 13 C 0.09 3.19 2.26 44.92 0.10 3.29 16 14 H 0.02 0.65 7.11 -2.39 -0.02 0.64 16 15 C -0.13 -4.44 8.69 71.98 0.63 -3.82 16 16 C -0.08 -2.14 1.94 -10.71 -0.02 -2.16 16 17 C -0.11 -2.54 5.09 30.65 0.16 -2.38 16 18 C 0.06 1.22 5.46 86.33 0.47 1.69 16 19 N -0.56 -11.66 4.91 -922.55 -4.53 -16.19 16 20 C 0.03 0.40 9.59 127.69 1.22 1.63 16 21 C 0.06 1.33 5.46 86.32 0.47 1.80 16 22 C -0.10 -2.66 4.89 30.64 0.15 -2.51 16 23 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 24 H 0.02 0.96 7.43 -2.39 -0.02 0.94 16 25 H 0.03 1.46 8.13 -2.39 -0.02 1.45 16 26 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 27 H 0.33 13.15 7.95 -89.69 -0.71 12.44 16 28 H 0.07 2.03 6.38 -2.38 -0.02 2.02 16 29 H 0.02 0.95 7.43 -2.39 -0.02 0.93 16 30 H 0.06 2.06 6.38 -2.39 -0.02 2.04 16 31 H 0.06 1.61 8.12 -2.38 -0.02 1.59 16 32 H 0.07 1.78 6.32 -2.39 -0.02 1.76 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 38 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 41 H 0.07 1.89 6.31 -2.38 -0.02 1.87 16 42 H 0.06 1.89 7.59 -2.39 -0.02 1.87 16 Total: -1.00 -60.48 314.78 0.05 -60.42 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.26 Total: 20.08 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.60 Total: -25.90 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -6.83 Total: -101.32 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.48 0.05 -60.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308822651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.878 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds