Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46862 * 2 1 4 4 N 1.46897 * 109.47193 * 120.00305 * 2 1 3 5 5 C 1.46902 * 110.99788 * 276.49892 * 4 2 1 6 6 H 1.08999 * 109.47422 * 34.21763 * 5 4 2 7 7 C 1.52996 * 109.47151 * 154.22462 * 5 4 2 8 8 C 1.50705 * 109.46572 * 274.22057 * 5 4 2 9 9 H 1.07994 * 120.00573 * 0.02562 * 8 5 4 10 10 C 1.37881 * 119.99562 * 179.97438 * 8 5 4 11 11 N 1.31514 * 119.99981 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99801 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46702 * 60.00701 * 12 10 8 14 14 H 1.48498 * 109.46913 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47503 * 300.00480 * 12 10 8 16 16 C 1.53001 * 109.47284 * 240.00237 * 2 1 3 17 17 C 1.53111 * 109.52450 * 179.68183 * 16 2 1 18 18 C 1.53041 * 109.27927 * 182.44060 * 17 16 2 19 19 N 1.46843 * 109.52376 * 59.17882 * 18 17 16 20 20 C 1.46900 * 111.00250 * 174.15736 * 19 18 17 21 21 C 1.46849 * 111.19878 * 298.26154 * 19 18 17 22 22 C 1.53034 * 109.52565 * 61.74181 * 21 19 18 23 23 H 1.09008 * 109.47306 * 53.94565 * 1 2 3 24 24 H 1.08999 * 109.47082 * 173.94062 * 1 2 3 25 25 H 1.08997 * 109.47119 * 293.94650 * 1 2 3 26 26 H 1.00897 * 111.00063 * 152.54622 * 4 2 1 27 27 H 1.08997 * 109.47250 * 186.38159 * 7 5 4 28 28 H 1.09002 * 109.47273 * 306.38304 * 7 5 4 29 29 H 1.09002 * 109.47169 * 66.37984 * 7 5 4 30 30 H 0.97008 * 119.99605 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.52351 * 299.87371 * 16 2 1 32 32 H 1.09005 * 109.50267 * 302.38064 * 17 16 2 33 33 H 1.08997 * 109.50742 * 62.50075 * 17 16 2 34 34 H 1.08999 * 109.45730 * 299.16304 * 18 17 16 35 35 H 1.08999 * 109.46334 * 179.19323 * 18 17 16 36 36 H 1.08999 * 109.47585 * 184.20803 * 20 19 18 37 37 H 1.08998 * 109.47450 * 304.21715 * 20 19 18 38 38 H 1.09006 * 109.46769 * 64.21099 * 20 19 18 39 39 H 1.09000 * 109.45866 * 301.71988 * 21 19 18 40 40 H 1.09000 * 109.46088 * 181.76080 * 21 19 18 41 41 H 1.09000 * 109.50302 * 180.88555 * 22 21 19 42 42 H 1.08999 * 109.53448 * 60.77783 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0488 0.2135 2.3554 6 1 1.2177 0.9155 2.2879 7 6 1.9252 -0.6008 3.6447 8 6 3.3496 0.9744 2.3645 9 1 4.0813 0.8025 1.5889 10 6 3.6052 1.8908 3.3624 11 7 2.7140 2.1005 4.3066 12 14 5.2179 2.8335 3.3741 13 1 5.3386 3.6232 2.1223 14 1 5.2473 3.7494 4.5426 15 1 6.3499 1.8768 3.4670 16 6 2.0400 -0.7212 -1.2493 17 6 3.5711 -0.7150 -1.2545 18 6 4.0748 -1.3836 -2.5356 19 7 3.5606 -0.6567 -3.7034 20 6 4.1348 -1.1858 -4.9477 21 6 2.0930 -0.6896 -3.7453 22 6 1.5302 -0.0002 -2.5003 23 1 -0.3634 0.6049 -0.8309 24 1 -0.3633 -1.0219 -0.1085 25 1 -0.3633 0.4171 0.9392 26 1 2.9283 -1.0998 1.0361 27 1 1.8328 0.0758 4.4943 28 1 1.0421 -1.2372 3.5894 29 1 2.8128 -1.2211 3.7692 30 1 2.8940 2.7450 5.0089 31 1 1.6790 -1.7497 -1.2491 32 1 3.9310 0.3132 -1.2149 33 1 3.9403 -1.2639 -0.3882 34 1 3.7261 -2.4158 -2.5678 35 1 5.1646 -1.3680 -2.5492 36 1 3.7956 -0.5825 -5.7897 37 1 5.2227 -1.1500 -4.8898 38 1 3.8122 -2.2177 -5.0867 39 1 1.7536 -1.7251 -3.7719 40 1 1.7435 -0.1700 -4.6375 41 1 0.4411 -0.0387 -2.5240 42 1 1.8574 1.0393 -2.4800 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308822652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = -14.089446 kcal Electronic energy + Delta-G solvation = -18374.367611 eV Core-core repulsion = 15774.368483 eV Total energy + Delta-G solvation = -2599.999128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21338 -36.54464 -33.96285 -31.87473 -30.86263 -29.82678 -27.09009 -26.30758 -24.98569 -23.04536 -22.73102 -20.37756 -19.62915 -19.24890 -16.63664 -15.74008 -15.04759 -14.92552 -14.66927 -14.40892 -13.71606 -13.62773 -13.26837 -12.79713 -12.39915 -12.31527 -12.22657 -11.80541 -11.68982 -11.25712 -11.22361 -11.11329 -10.95440 -10.87906 -10.73589 -10.43153 -10.24455 -10.04276 -10.00065 -9.71780 -9.44054 -9.00386 -8.35505 -8.30483 -7.18238 -5.95361 -4.06712 3.31247 3.36071 3.38799 3.96816 4.43539 4.93762 4.97291 5.04612 5.19250 5.30860 5.34719 5.41771 5.51828 5.56784 5.61766 5.73565 5.76419 5.88293 5.93745 6.04537 6.08687 6.25883 6.26968 6.37701 6.41242 6.64072 6.68329 6.81532 6.97568 6.99182 7.11815 7.13137 7.20301 7.38403 7.60347 7.80249 8.12889 8.24693 8.40323 8.75107 9.06668 9.60718 11.06229 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025050 B = 0.006613 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.505856 B = 4233.357842 C = 4901.098419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.046 0.954 4 N -0.690 5.690 5 C 0.208 3.792 6 H 0.032 0.968 7 C -0.122 4.122 8 C -0.542 4.542 9 H 0.053 0.947 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.887 3.113 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.084 4.084 17 C -0.115 4.115 18 C 0.059 3.941 19 N -0.544 5.544 20 C 0.026 3.974 21 C 0.058 3.942 22 C -0.111 4.111 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.327 0.673 27 H 0.076 0.924 28 H 0.012 0.988 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -5.852 -14.297 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.064 0.936 4 N -0.322 5.322 5 C 0.100 3.900 6 H 0.050 0.950 7 C -0.181 4.181 8 C -0.581 4.581 9 H 0.071 0.929 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.715 3.285 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.103 4.103 17 C -0.153 4.153 18 C -0.069 4.069 19 N -0.269 5.269 20 C -0.123 4.123 21 C -0.070 4.070 22 C -0.149 4.149 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.095 0.905 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.137 -5.516 -13.906 15.003 hybrid contribution 1.529 0.321 -0.206 1.576 sum 0.392 -5.195 -14.112 15.043 Atomic orbital electron populations 1.21803 0.96085 1.00635 1.00784 1.21322 0.94516 0.96653 0.89206 0.93562 1.61017 1.31309 1.35628 1.04201 1.19142 0.95691 0.89066 0.86101 0.95017 1.21669 0.96807 0.98615 1.00988 1.21816 1.03323 1.22555 1.10409 0.92902 1.24926 0.96463 0.96661 0.95473 1.69896 1.34335 1.34789 1.13564 0.86743 0.84413 0.79909 0.77435 1.20360 1.21293 1.20341 1.21321 0.94900 0.99557 0.94571 1.21679 0.95715 1.02034 0.95823 1.22105 0.99434 0.94823 0.90540 1.61921 1.07137 1.55331 1.02480 1.22334 1.00187 0.97438 0.92293 1.22095 0.87128 0.98779 0.98975 1.21667 0.99726 1.00357 0.93175 0.93698 0.93263 0.92665 0.85440 0.90545 0.96857 0.95722 0.92948 0.91548 0.90924 0.90926 0.95205 0.91107 0.91637 0.91572 0.96048 0.95247 0.91241 0.91337 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.88 37.16 0.33 -1.98 16 2 C 0.09 1.74 2.05 -67.71 -0.14 1.60 16 3 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 4 N -0.69 -14.64 6.05 -100.95 -0.61 -15.25 16 5 C 0.21 5.25 2.37 -68.86 -0.16 5.08 16 6 H 0.03 0.88 6.99 -51.93 -0.36 0.52 16 7 C -0.12 -3.06 9.20 37.16 0.34 -2.71 16 8 C -0.54 -14.71 8.29 -34.44 -0.29 -15.00 16 9 H 0.05 1.42 7.73 -52.49 -0.41 1.01 16 10 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 11 N -0.89 -25.46 11.39 55.43 0.63 -24.83 16 12 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.08 -1.30 1.98 -90.50 -0.18 -1.48 16 17 C -0.11 -1.77 5.08 -26.65 -0.14 -1.90 16 18 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 19 N -0.54 -6.97 4.91 -242.96 -1.19 -8.16 16 20 C 0.03 0.26 9.59 60.06 0.58 0.84 16 21 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 22 C -0.11 -1.50 4.95 -26.65 -0.13 -1.63 16 23 H 0.04 0.66 6.83 -51.92 -0.35 0.31 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.05 7.26 -51.93 -0.38 0.67 16 26 H 0.33 6.83 5.91 -39.29 -0.23 6.59 16 27 H 0.08 2.06 6.27 -51.93 -0.33 1.74 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.07 0.85 6.72 -51.93 -0.35 0.50 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -28.06 317.60 -9.09 -37.15 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.76 Total: 3.87 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.17 Total: -48.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.06 -9.09 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308822652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.062 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds