Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46862 * 2 1 4 4 N 1.46897 * 109.47193 * 120.00305 * 2 1 3 5 5 C 1.46902 * 110.99788 * 276.49892 * 4 2 1 6 6 H 1.08999 * 109.47422 * 34.21763 * 5 4 2 7 7 C 1.52996 * 109.47151 * 154.22462 * 5 4 2 8 8 C 1.50705 * 109.46572 * 274.22057 * 5 4 2 9 9 H 1.07994 * 120.00573 * 0.02562 * 8 5 4 10 10 C 1.37881 * 119.99562 * 179.97438 * 8 5 4 11 11 N 1.31514 * 119.99981 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99801 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46702 * 60.00701 * 12 10 8 14 14 H 1.48498 * 109.46913 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47503 * 300.00480 * 12 10 8 16 16 C 1.53001 * 109.47284 * 240.00237 * 2 1 3 17 17 C 1.53111 * 109.52450 * 179.68183 * 16 2 1 18 18 C 1.53041 * 109.27927 * 182.44060 * 17 16 2 19 19 N 1.46843 * 109.52376 * 59.17882 * 18 17 16 20 20 C 1.46900 * 111.00250 * 174.15736 * 19 18 17 21 21 C 1.46849 * 111.19878 * 298.26154 * 19 18 17 22 22 C 1.53034 * 109.52565 * 61.74181 * 21 19 18 23 23 H 1.09008 * 109.47306 * 53.94565 * 1 2 3 24 24 H 1.08999 * 109.47082 * 173.94062 * 1 2 3 25 25 H 1.08997 * 109.47119 * 293.94650 * 1 2 3 26 26 H 1.00897 * 111.00063 * 152.54622 * 4 2 1 27 27 H 1.08997 * 109.47250 * 186.38159 * 7 5 4 28 28 H 1.09002 * 109.47273 * 306.38304 * 7 5 4 29 29 H 1.09002 * 109.47169 * 66.37984 * 7 5 4 30 30 H 0.97008 * 119.99605 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.52351 * 299.87371 * 16 2 1 32 32 H 1.09005 * 109.50267 * 302.38064 * 17 16 2 33 33 H 1.08997 * 109.50742 * 62.50075 * 17 16 2 34 34 H 1.08999 * 109.45730 * 299.16304 * 18 17 16 35 35 H 1.08999 * 109.46334 * 179.19323 * 18 17 16 36 36 H 1.08999 * 109.47585 * 184.20803 * 20 19 18 37 37 H 1.08998 * 109.47450 * 304.21715 * 20 19 18 38 38 H 1.09006 * 109.46769 * 64.21099 * 20 19 18 39 39 H 1.09000 * 109.45866 * 301.71988 * 21 19 18 40 40 H 1.09000 * 109.46088 * 181.76080 * 21 19 18 41 41 H 1.09000 * 109.50302 * 180.88555 * 22 21 19 42 42 H 1.08999 * 109.53448 * 60.77783 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0488 0.2135 2.3554 6 1 1.2177 0.9155 2.2879 7 6 1.9252 -0.6008 3.6447 8 6 3.3496 0.9744 2.3645 9 1 4.0813 0.8025 1.5889 10 6 3.6052 1.8908 3.3624 11 7 2.7140 2.1005 4.3066 12 14 5.2179 2.8335 3.3741 13 1 5.3386 3.6232 2.1223 14 1 5.2473 3.7494 4.5426 15 1 6.3499 1.8768 3.4670 16 6 2.0400 -0.7212 -1.2493 17 6 3.5711 -0.7150 -1.2545 18 6 4.0748 -1.3836 -2.5356 19 7 3.5606 -0.6567 -3.7034 20 6 4.1348 -1.1858 -4.9477 21 6 2.0930 -0.6896 -3.7453 22 6 1.5302 -0.0002 -2.5003 23 1 -0.3634 0.6049 -0.8309 24 1 -0.3633 -1.0219 -0.1085 25 1 -0.3633 0.4171 0.9392 26 1 2.9283 -1.0998 1.0361 27 1 1.8328 0.0758 4.4943 28 1 1.0421 -1.2372 3.5894 29 1 2.8128 -1.2211 3.7692 30 1 2.8940 2.7450 5.0089 31 1 1.6790 -1.7497 -1.2491 32 1 3.9310 0.3132 -1.2149 33 1 3.9403 -1.2639 -0.3882 34 1 3.7261 -2.4158 -2.5678 35 1 5.1646 -1.3680 -2.5492 36 1 3.7956 -0.5825 -5.7897 37 1 5.2227 -1.1500 -4.8898 38 1 3.8122 -2.2177 -5.0867 39 1 1.7536 -1.7251 -3.7719 40 1 1.7435 -0.1700 -4.6375 41 1 0.4411 -0.0387 -2.5240 42 1 1.8574 1.0393 -2.4800 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308822652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = -32.205773 kcal Electronic energy + Delta-G solvation = -18375.153194 eV Core-core repulsion = 15774.368483 eV Total energy + Delta-G solvation = -2600.784711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39306 -38.05464 -35.65360 -33.61502 -32.00449 -31.36788 -28.80278 -27.33870 -27.13441 -24.21570 -23.83281 -22.05712 -21.22072 -20.51912 -18.65856 -17.00583 -16.68467 -16.35497 -15.97813 -15.52167 -15.29196 -14.91845 -14.63701 -14.23507 -14.10470 -13.53053 -13.41294 -13.26294 -13.19708 -12.87710 -12.77872 -12.68529 -12.42131 -12.31230 -12.23615 -12.06170 -11.93965 -11.91929 -11.44966 -11.07482 -11.03870 -10.90358 -10.49908 -9.23268 -9.02989 -8.06296 -6.26710 1.38411 1.38636 1.46415 2.39932 3.04467 3.15276 3.61495 3.84045 3.88101 4.04052 4.25873 4.38361 4.40900 4.53884 4.63785 4.65325 4.69344 4.76088 4.83735 4.85702 4.91662 4.93056 5.03088 5.03451 5.10303 5.15046 5.18168 5.26265 5.31366 5.33448 5.45520 5.52871 5.61103 5.71150 6.06715 6.16196 6.20034 6.21216 6.42583 6.86906 7.04975 7.44636 8.92091 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025050 B = 0.006613 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.505856 B = 4233.357842 C = 4901.098419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.093 3.907 3 H 0.010 0.990 4 N -0.683 5.683 5 C 0.214 3.786 6 H 0.000 1.000 7 C -0.112 4.112 8 C -0.554 4.554 9 H 0.050 0.950 10 C 0.019 3.981 11 N -0.914 5.914 12 Si 0.948 3.052 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.271 1.271 16 C -0.074 4.074 17 C -0.112 4.112 18 C 0.066 3.934 19 N -0.563 5.563 20 C 0.026 3.974 21 C 0.061 3.939 22 C -0.107 4.107 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.329 0.671 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -6.685 -16.208 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.017 4.017 3 H 0.028 0.972 4 N -0.314 5.314 5 C 0.105 3.895 6 H 0.018 0.982 7 C -0.170 4.170 8 C -0.593 4.593 9 H 0.068 0.932 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.774 3.226 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.196 1.196 16 C -0.093 4.093 17 C -0.150 4.150 18 C -0.062 4.062 19 N -0.288 5.288 20 C -0.121 4.121 21 C -0.066 4.066 22 C -0.145 4.145 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.148 0.852 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.758 -6.360 -15.837 17.083 hybrid contribution 1.380 0.586 0.368 1.544 sum 0.622 -5.775 -15.468 16.523 Atomic orbital electron populations 1.21748 0.94646 1.01826 1.00442 1.21395 0.95628 0.94911 0.89787 0.97152 1.60975 1.31394 1.34733 1.04287 1.18918 0.93745 0.89031 0.87812 0.98197 1.21510 0.97425 0.98124 0.99953 1.22082 1.03956 1.22972 1.10267 0.93180 1.25669 0.99598 0.97601 0.95222 1.70021 1.35934 1.35319 1.14053 0.85764 0.80688 0.78687 0.77425 1.20139 1.20810 1.19603 1.21221 0.94784 0.99599 0.93709 1.21605 0.95826 1.00521 0.97074 1.21990 0.99771 0.94867 0.89581 1.61905 1.07697 1.55935 1.03261 1.22379 1.00424 0.98040 0.91280 1.22086 0.86758 0.99231 0.98566 1.21632 1.00666 0.99259 0.92956 0.91219 0.91781 0.95273 0.85198 0.92873 0.95315 0.95735 0.92929 0.90714 0.93558 0.92001 0.94309 0.90517 0.90489 0.91125 0.95181 0.94371 0.89537 0.89846 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.88 71.98 0.64 -3.68 16 2 C 0.09 3.49 2.05 44.92 0.09 3.58 16 3 H 0.01 0.46 7.68 -2.39 -0.02 0.45 16 4 N -0.68 -29.24 6.05 -473.31 -2.86 -32.11 16 5 C 0.21 11.06 2.37 44.17 0.10 11.16 16 6 H 0.00 0.00 6.99 -2.39 -0.02 -0.01 16 7 C -0.11 -5.65 9.20 71.98 0.66 -4.99 16 8 C -0.55 -30.65 8.29 25.60 0.21 -30.44 16 9 H 0.05 2.74 7.73 -2.91 -0.02 2.72 16 10 C 0.02 1.06 5.30 84.66 0.45 1.51 16 11 N -0.91 -53.41 11.39 21.45 0.24 -53.17 16 12 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 C -0.07 -2.20 1.98 -10.71 -0.02 -2.22 16 17 C -0.11 -3.41 5.08 30.65 0.16 -3.26 16 18 C 0.07 1.62 5.46 86.33 0.47 2.09 16 19 N -0.56 -13.10 4.91 -922.59 -4.53 -17.63 16 20 C 0.03 0.46 9.59 127.69 1.22 1.69 16 21 C 0.06 1.30 5.46 86.32 0.47 1.78 16 22 C -0.11 -2.69 4.95 30.65 0.15 -2.53 16 23 H 0.07 1.96 6.83 -2.38 -0.02 1.95 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.03 1.11 7.26 -2.39 -0.02 1.09 16 26 H 0.33 13.83 5.91 -89.70 -0.53 13.30 16 27 H 0.05 2.93 6.27 -2.39 -0.01 2.91 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 1.98 6.34 -2.39 -0.02 1.96 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 41 H 0.08 1.84 6.72 -2.39 -0.02 1.82 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -60.33 317.60 -0.08 -60.41 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.43 Total: 21.52 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.61 Total: -25.32 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -7.15 Total: -102.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.33 -0.08 -60.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308822652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.201 kcal (2) G-P(sol) polarization free energy of solvation -60.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds