Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46809 * 2 1 4 4 C 1.50703 * 109.47484 * 119.99794 * 2 1 3 5 5 H 1.08002 * 119.99903 * 120.00000 * 4 2 1 6 6 C 1.37869 * 120.00092 * 300.00513 * 4 2 1 7 7 N 1.31519 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00242 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47041 * 89.99774 * 8 6 4 10 10 H 1.48502 * 109.47324 * 209.99845 * 8 6 4 11 11 H 1.48501 * 109.47163 * 330.00217 * 8 6 4 12 12 N 1.46900 * 109.47145 * 240.00440 * 2 1 3 13 13 C 1.46894 * 111.00559 * 84.99825 * 12 2 1 14 14 C 1.52997 * 109.47515 * 180.02562 * 13 12 2 15 15 N 1.46899 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.48004 * 111.00214 * 298.72108 * 15 14 13 17 17 C 1.50442 * 112.82767 * 191.34406 * 16 15 14 18 18 C 1.54309 * 108.49837 * 93.72355 * 17 16 15 19 19 C 1.45878 * 112.18925 * 281.46370 * 18 17 16 20 20 C 1.54309 * 112.18337 * 61.12063 * 19 18 17 21 21 C 1.47997 * 111.00148 * 169.99874 * 15 14 13 22 22 H 1.09001 * 109.47164 * 60.00019 * 1 2 3 23 23 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47075 * 300.00074 * 1 2 3 25 25 H 0.97001 * 120.00147 * 179.97438 * 7 6 4 26 26 H 1.00905 * 110.99607 * 208.95322 * 12 2 1 27 27 H 1.09002 * 109.47104 * 59.99767 * 13 12 2 28 28 H 1.08998 * 109.46828 * 300.00600 * 13 12 2 29 29 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 30 30 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 31 31 H 1.08994 * 108.80954 * 312.20831 * 16 15 14 32 32 H 1.08997 * 108.80888 * 70.48087 * 16 15 14 33 33 H 1.09003 * 109.63314 * 334.02531 * 17 16 15 34 34 H 1.08992 * 109.63352 * 213.42986 * 17 16 15 35 35 H 1.09004 * 108.94018 * 160.76456 * 18 17 16 36 36 H 1.09006 * 108.86598 * 42.11385 * 18 17 16 37 37 H 1.08997 * 108.94222 * 300.42300 * 19 18 17 38 38 H 1.09001 * 108.94120 * 181.81878 * 19 18 17 39 39 H 1.09006 * 109.63238 * 161.75711 * 20 19 18 40 40 H 1.09004 * 109.63542 * 41.16441 * 20 19 18 41 41 H 1.08998 * 108.81684 * 205.70533 * 21 15 14 42 42 H 1.09006 * 108.80956 * 324.08638 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5457 4.4123 10 1 1.3433 -0.9492 5.1121 11 1 2.4862 -2.5662 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5950 -0.5331 -3.5745 15 7 2.6572 0.3819 -4.7221 16 6 1.3155 0.9136 -5.0499 17 6 1.2795 1.6332 -6.3706 18 6 0.8433 0.6327 -7.4614 19 6 1.9355 -0.2408 -7.8763 20 6 2.4702 -1.0989 -6.7105 21 6 3.3682 -0.2423 -5.8602 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7089 1.1613 3.4844 26 1 2.9174 -1.1204 -1.0287 27 1 2.7588 1.0463 -2.1182 28 1 1.0871 0.6164 -2.5525 29 1 1.9183 -1.3565 -3.8030 30 1 3.5904 -0.9271 -3.3691 31 1 0.6074 0.0856 -5.0813 32 1 1.0100 1.6049 -4.2645 33 1 2.2714 2.0201 -6.6040 34 1 0.5652 2.4549 -6.3205 35 1 0.4858 1.1883 -8.3285 36 1 0.0289 0.0210 -7.0733 37 1 2.7486 0.3706 -8.2674 38 1 1.5796 -0.9010 -8.6672 39 1 3.0358 -1.9425 -7.1061 40 1 1.6358 -1.4626 -6.1107 41 1 3.7953 0.5444 -6.4820 42 1 4.1774 -0.8612 -5.4723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308844540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -10.422756 kcal Electronic energy + Delta-G solvation = -17791.897058 eV Core-core repulsion = 15192.056930 eV Total energy + Delta-G solvation = -2599.840128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38591 -36.20566 -34.47537 -32.43762 -32.14175 -29.63584 -27.25878 -25.43236 -24.98724 -24.49027 -21.61167 -20.59702 -19.71540 -19.35827 -16.48533 -16.28685 -15.78972 -15.05933 -14.66293 -14.40631 -13.99144 -13.73406 -13.36050 -13.07650 -12.89762 -12.65309 -12.33795 -11.97841 -11.77792 -11.26090 -11.21376 -11.02160 -10.93657 -10.83023 -10.72889 -10.64479 -10.36500 -10.28075 -10.16433 -10.04853 -9.79778 -8.79080 -8.44852 -8.02106 -7.21802 -5.99929 -4.06275 3.31189 3.37630 3.41623 3.92723 4.42947 4.54003 4.62581 4.83085 5.03973 5.13679 5.30889 5.31833 5.39432 5.41998 5.50939 5.56558 5.69313 5.77634 5.84629 5.89884 5.94939 5.97874 6.03489 6.05108 6.18500 6.23764 6.25220 6.49021 6.57476 6.91852 7.17294 7.20940 7.30197 7.32490 7.55414 7.81111 7.93899 8.30521 8.43031 8.71995 9.04772 9.59555 11.06519 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052714 B = 0.004178 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.041875 B = 6700.218936 C = 6990.963001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.691 5.691 13 C 0.064 3.936 14 C 0.064 3.936 15 N -0.550 5.550 16 C 0.061 3.939 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.150 4.150 21 C 0.061 3.939 22 H 0.003 0.997 23 H 0.030 0.970 24 H 0.080 0.920 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -0.487 -18.704 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.066 4.066 14 C -0.064 4.064 15 N -0.275 5.275 16 C -0.066 4.066 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.190 4.190 21 C -0.067 4.067 22 H 0.022 0.978 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.447 -0.224 -18.598 18.656 hybrid contribution 0.518 -0.594 0.866 1.171 sum 1.965 -0.818 -17.732 17.859 Atomic orbital electron populations 1.21703 0.97966 0.99219 0.99261 1.19090 0.92551 0.92364 0.85542 0.98145 1.21274 1.31375 1.12483 0.90496 0.92237 1.24923 0.95062 0.95020 0.99038 1.69904 1.36666 1.22941 1.23413 0.86523 0.78462 0.80060 0.82498 1.20759 1.21217 1.19858 1.60696 1.31952 1.33378 1.06178 1.21865 0.99705 0.94375 0.90704 1.22096 1.00543 0.93636 0.90138 1.61824 1.20704 1.38637 1.06352 1.21792 0.89157 0.98415 0.97235 1.21441 1.02288 0.97817 0.94275 1.20618 0.98579 0.97838 0.98907 1.20534 0.98806 0.98148 0.97783 1.21943 1.00561 0.98746 0.97703 1.21862 0.96109 0.96751 0.91949 0.97822 0.95065 0.90143 0.92956 0.85436 0.95606 0.92031 0.94537 0.91362 0.94802 0.90762 0.90820 0.91241 0.92344 0.92278 0.92126 0.92610 0.91602 0.91612 0.91177 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.54 2.60 -68.86 -0.18 5.36 16 3 H 0.00 0.03 7.80 -51.92 -0.40 -0.38 16 4 C -0.52 -14.48 8.59 -34.44 -0.30 -14.77 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.69 -15.21 6.30 -107.95 -0.68 -15.89 16 13 C 0.06 1.20 5.29 -3.83 -0.02 1.18 16 14 C 0.06 0.99 5.12 -3.83 -0.02 0.97 16 15 N -0.55 -7.51 4.71 -235.91 -1.11 -8.62 16 16 C 0.06 0.79 4.32 -4.49 -0.02 0.77 16 17 C -0.12 -1.25 5.63 -27.32 -0.15 -1.40 16 18 C -0.12 -1.12 5.30 -29.42 -0.16 -1.28 16 19 C -0.12 -1.02 5.30 -29.42 -0.16 -1.17 16 20 C -0.15 -1.51 5.60 -27.32 -0.15 -1.66 16 21 C 0.06 0.68 5.16 -4.50 -0.02 0.66 16 22 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.33 7.03 8.22 -39.29 -0.32 6.70 16 27 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 28 H 0.06 1.20 5.96 -51.93 -0.31 0.89 16 29 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 30 H 0.07 1.02 7.80 -51.93 -0.40 0.62 16 31 H 0.03 0.45 6.44 -51.93 -0.33 0.12 16 32 H 0.07 1.04 6.91 -51.93 -0.36 0.69 16 33 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 37 H 0.06 0.51 7.52 -51.93 -0.39 0.12 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.76 6.74 -51.93 -0.35 0.41 16 41 H 0.07 0.74 6.59 -51.93 -0.34 0.40 16 42 H 0.07 0.73 7.64 -51.93 -0.40 0.33 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -28.60 312.81 -9.95 -38.55 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.55 Total: 2.53 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.93 Total: -12.54 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -1.17 Total: -49.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.60 -9.95 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308844540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.123 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds