Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46809 * 2 1 4 4 C 1.50703 * 109.47484 * 119.99794 * 2 1 3 5 5 H 1.08002 * 119.99903 * 120.00000 * 4 2 1 6 6 C 1.37869 * 120.00092 * 300.00513 * 4 2 1 7 7 N 1.31519 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00242 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47041 * 89.99774 * 8 6 4 10 10 H 1.48502 * 109.47324 * 209.99845 * 8 6 4 11 11 H 1.48501 * 109.47163 * 330.00217 * 8 6 4 12 12 N 1.46900 * 109.47145 * 240.00440 * 2 1 3 13 13 C 1.46894 * 111.00559 * 84.99825 * 12 2 1 14 14 C 1.52997 * 109.47515 * 180.02562 * 13 12 2 15 15 N 1.46899 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.48004 * 111.00214 * 298.72108 * 15 14 13 17 17 C 1.50442 * 112.82767 * 191.34406 * 16 15 14 18 18 C 1.54309 * 108.49837 * 93.72355 * 17 16 15 19 19 C 1.45878 * 112.18925 * 281.46370 * 18 17 16 20 20 C 1.54309 * 112.18337 * 61.12063 * 19 18 17 21 21 C 1.47997 * 111.00148 * 169.99874 * 15 14 13 22 22 H 1.09001 * 109.47164 * 60.00019 * 1 2 3 23 23 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47075 * 300.00074 * 1 2 3 25 25 H 0.97001 * 120.00147 * 179.97438 * 7 6 4 26 26 H 1.00905 * 110.99607 * 208.95322 * 12 2 1 27 27 H 1.09002 * 109.47104 * 59.99767 * 13 12 2 28 28 H 1.08998 * 109.46828 * 300.00600 * 13 12 2 29 29 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 30 30 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 31 31 H 1.08994 * 108.80954 * 312.20831 * 16 15 14 32 32 H 1.08997 * 108.80888 * 70.48087 * 16 15 14 33 33 H 1.09003 * 109.63314 * 334.02531 * 17 16 15 34 34 H 1.08992 * 109.63352 * 213.42986 * 17 16 15 35 35 H 1.09004 * 108.94018 * 160.76456 * 18 17 16 36 36 H 1.09006 * 108.86598 * 42.11385 * 18 17 16 37 37 H 1.08997 * 108.94222 * 300.42300 * 19 18 17 38 38 H 1.09001 * 108.94120 * 181.81878 * 19 18 17 39 39 H 1.09006 * 109.63238 * 161.75711 * 20 19 18 40 40 H 1.09004 * 109.63542 * 41.16441 * 20 19 18 41 41 H 1.08998 * 108.81684 * 205.70533 * 21 15 14 42 42 H 1.09006 * 108.80956 * 324.08638 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5457 4.4123 10 1 1.3433 -0.9492 5.1121 11 1 2.4862 -2.5662 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5950 -0.5331 -3.5745 15 7 2.6572 0.3819 -4.7221 16 6 1.3155 0.9136 -5.0499 17 6 1.2795 1.6332 -6.3706 18 6 0.8433 0.6327 -7.4614 19 6 1.9355 -0.2408 -7.8763 20 6 2.4702 -1.0989 -6.7105 21 6 3.3682 -0.2423 -5.8602 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7089 1.1613 3.4844 26 1 2.9174 -1.1204 -1.0287 27 1 2.7588 1.0463 -2.1182 28 1 1.0871 0.6164 -2.5525 29 1 1.9183 -1.3565 -3.8030 30 1 3.5904 -0.9271 -3.3691 31 1 0.6074 0.0856 -5.0813 32 1 1.0100 1.6049 -4.2645 33 1 2.2714 2.0201 -6.6040 34 1 0.5652 2.4549 -6.3205 35 1 0.4858 1.1883 -8.3285 36 1 0.0289 0.0210 -7.0733 37 1 2.7486 0.3706 -8.2674 38 1 1.5796 -0.9010 -8.6672 39 1 3.0358 -1.9425 -7.1061 40 1 1.6358 -1.4626 -6.1107 41 1 3.7953 0.5444 -6.4820 42 1 4.1774 -0.8612 -5.4723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308844540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -29.062905 kcal Electronic energy + Delta-G solvation = -17792.705356 eV Core-core repulsion = 15192.056930 eV Total energy + Delta-G solvation = -2600.648426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34473 -37.91194 -35.79441 -34.25658 -33.05151 -31.33985 -28.71138 -27.35994 -26.22553 -25.62886 -22.99981 -21.73145 -21.38182 -20.37487 -18.52628 -17.30774 -16.94724 -16.76961 -16.23785 -15.60687 -15.28996 -14.93829 -14.76181 -14.32910 -14.20253 -13.95073 -13.59783 -13.41263 -13.10731 -12.93638 -12.81347 -12.67502 -12.29462 -12.24720 -12.13860 -11.99981 -11.91595 -11.61225 -11.41870 -11.33238 -11.08565 -10.89753 -10.58136 -9.12820 -9.08148 -8.13892 -6.28691 1.42567 1.43573 1.54633 2.41238 2.82282 3.14809 3.72712 3.76834 3.90582 3.93962 4.17934 4.21844 4.28226 4.40964 4.46869 4.57489 4.63959 4.73505 4.78551 4.82942 4.87328 5.01797 5.02375 5.04983 5.07146 5.11696 5.20005 5.23966 5.27564 5.34380 5.40468 5.45199 5.48215 5.65774 5.82884 6.13637 6.20298 6.28554 6.44926 6.75757 6.98800 7.41892 8.92195 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052714 B = 0.004178 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.041875 B = 6700.218936 C = 6990.963001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H -0.033 1.033 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.686 5.686 13 C 0.071 3.929 14 C 0.079 3.921 15 N -0.559 5.559 16 C 0.063 3.937 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.147 4.147 21 C 0.060 3.940 22 H 0.018 0.982 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.263 0.737 26 H 0.333 0.667 27 H 0.012 0.988 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -1.269 -19.898 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 H -0.016 1.016 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.318 5.318 13 C -0.059 4.059 14 C -0.050 4.050 15 N -0.285 5.285 16 C -0.064 4.064 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.186 4.186 21 C -0.067 4.067 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.169 -1.011 -19.822 19.966 hybrid contribution 0.293 -0.307 1.193 1.266 sum 2.463 -1.319 -18.629 18.837 Atomic orbital electron populations 1.21526 0.97749 0.98809 0.98889 1.18916 0.92746 0.90711 0.86958 1.01585 1.21592 1.31819 1.12801 0.91546 0.92066 1.25775 0.95099 0.95685 1.02168 1.70035 1.37430 1.24128 1.24236 0.85439 0.77986 0.79045 0.78436 1.20043 1.20795 1.19118 1.60613 1.32234 1.33431 1.05490 1.21828 0.99143 0.93892 0.91049 1.21848 1.00497 0.93172 0.89437 1.61792 1.21226 1.38520 1.06934 1.21794 0.88621 0.97885 0.98146 1.21418 1.02676 0.98108 0.93157 1.20596 0.98507 0.97624 0.98914 1.20532 0.98920 0.98187 0.97480 1.21902 0.99793 0.99167 0.97742 1.21947 0.96085 0.97318 0.91301 0.96295 0.95278 0.92372 0.92789 0.84952 0.96977 0.92855 0.94923 0.90611 0.95613 0.92702 0.90680 0.90458 0.90712 0.93145 0.91175 0.91439 0.90230 0.93421 0.90063 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.80 9.19 71.98 0.66 -5.14 16 2 C 0.22 11.47 2.60 44.17 0.11 11.58 16 3 H -0.03 -1.98 7.80 -2.38 -0.02 -1.99 16 4 C -0.54 -30.36 8.59 25.60 0.22 -30.14 16 5 H 0.06 3.35 7.62 -2.91 -0.02 3.32 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.69 -30.48 6.30 -495.45 -3.12 -33.60 16 13 C 0.07 2.71 5.29 86.30 0.46 3.17 16 14 C 0.08 2.40 5.12 86.30 0.44 2.84 16 15 N -0.56 -14.83 4.71 -900.28 -4.24 -19.07 16 16 C 0.06 1.59 4.32 85.26 0.37 1.96 16 17 C -0.12 -2.23 5.63 30.21 0.17 -2.06 16 18 C -0.12 -1.94 5.30 28.85 0.15 -1.79 16 19 C -0.11 -1.71 5.30 28.85 0.15 -1.56 16 20 C -0.15 -2.65 5.60 30.21 0.17 -2.48 16 21 C 0.06 1.24 5.16 85.26 0.44 1.68 16 22 H 0.02 0.87 7.45 -2.39 -0.02 0.85 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.33 14.25 8.22 -89.69 -0.74 13.51 16 27 H 0.01 0.50 8.06 -2.39 -0.02 0.48 16 28 H 0.05 2.12 5.96 -2.39 -0.01 2.10 16 29 H 0.03 1.03 7.81 -2.39 -0.02 1.01 16 30 H 0.08 2.19 7.80 -2.39 -0.02 2.18 16 31 H 0.03 0.69 6.44 -2.39 -0.02 0.67 16 32 H 0.05 1.58 6.91 -2.39 -0.02 1.56 16 33 H 0.07 1.44 7.08 -2.39 -0.02 1.42 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.05 0.92 7.51 -2.38 -0.02 0.90 16 37 H 0.07 0.95 7.52 -2.39 -0.02 0.93 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 40 H 0.05 1.05 6.74 -2.38 -0.02 1.03 16 41 H 0.08 1.52 6.59 -2.39 -0.02 1.50 16 42 H 0.07 1.38 7.64 -2.38 -0.02 1.36 16 Total: -1.00 -60.77 312.81 -1.06 -61.84 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.24 Total: 19.43 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.80 Total: -20.82 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -7.12 Total: -106.40 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.77 -1.06 -61.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308844540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.773 kcal (2) G-P(sol) polarization free energy of solvation -60.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds