Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46853 * 2 1 4 4 N 1.46902 * 109.47182 * 120.00001 * 2 1 3 5 5 C 1.46905 * 110.99679 * 153.65294 * 4 2 1 6 6 H 1.09000 * 109.53528 * 33.74869 * 5 4 2 7 7 C 1.53117 * 109.49907 * 153.84868 * 5 4 2 8 8 C 1.53125 * 109.15733 * 177.59591 * 7 5 4 9 9 C 1.53033 * 109.27664 * 302.34251 * 8 7 5 10 10 N 1.46849 * 109.52329 * 59.18244 * 9 8 7 11 11 C 1.46902 * 110.99997 * 174.16213 * 10 9 8 12 12 H 1.09003 * 109.47118 * 179.21198 * 11 10 9 13 13 C 1.52998 * 109.47430 * 59.20698 * 11 10 9 14 14 C 1.50707 * 109.46803 * 299.20570 * 11 10 9 15 15 H 1.07993 * 120.00007 * 359.72872 * 14 11 10 16 16 C 1.37878 * 119.99637 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00286 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99620 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47447 * 90.00500 * 18 16 14 20 20 H 1.48504 * 109.46910 * 210.00505 * 18 16 14 21 21 H 1.48500 * 109.47400 * 330.00164 * 18 16 14 22 22 C 1.46842 * 111.19593 * 298.25316 * 10 9 8 23 23 H 1.08994 * 109.47270 * 299.99514 * 1 2 3 24 24 H 1.08994 * 109.47535 * 59.99910 * 1 2 3 25 25 H 1.09007 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47270 * 240.00486 * 2 1 3 27 27 H 1.08998 * 109.46720 * 65.15410 * 3 2 1 28 28 H 1.09000 * 109.47026 * 185.14922 * 3 2 1 29 29 H 1.08995 * 109.47172 * 305.15625 * 3 2 1 30 30 H 1.00898 * 111.00209 * 29.69877 * 4 2 1 31 31 H 1.09003 * 109.52375 * 297.49426 * 7 5 4 32 32 H 1.08997 * 109.52813 * 57.62863 * 7 5 4 33 33 H 1.09000 * 109.50513 * 62.28395 * 8 7 5 34 34 H 1.09004 * 109.49851 * 182.40398 * 8 7 5 35 35 H 1.09005 * 109.46215 * 299.16490 * 9 8 7 36 36 H 1.08997 * 109.46340 * 179.19541 * 9 8 7 37 37 H 1.08996 * 109.47218 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47093 * 300.00335 * 13 11 10 39 39 H 1.08995 * 109.46946 * 59.99905 * 13 11 10 40 40 H 0.97001 * 120.00106 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46187 * 181.75326 * 22 10 9 42 42 H 1.08995 * 109.46920 * 301.73563 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3539 -1.2629 0.9701 6 1 3.9165 -0.6154 0.2976 7 6 4.0952 -1.3817 2.3045 8 6 5.4606 -2.0321 2.0647 9 6 5.2604 -3.3993 1.4068 10 7 4.5477 -3.2317 0.1339 11 6 4.4594 -4.5059 -0.5918 12 1 3.9149 -4.3561 -1.5241 13 6 3.7229 -5.5336 0.2697 14 6 5.8475 -5.0078 -0.8960 15 1 6.7089 -4.4352 -0.5856 16 6 6.0176 -6.1956 -1.5751 17 7 4.9686 -6.8903 -1.9578 18 14 7.7381 -6.8181 -1.9515 19 1 8.2093 -7.6764 -0.8351 20 1 7.7143 -7.6092 -3.2081 21 1 8.6584 -5.6636 -2.1109 22 6 3.2148 -2.6524 0.3439 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.7539 1.9290 0.9326 28 1 3.1260 1.4440 -0.0922 29 1 1.6032 1.9824 -0.8402 30 1 1.3688 -1.4035 1.4976 31 1 4.2349 -0.3894 2.7333 32 1 3.5134 -1.9967 2.9911 33 1 6.0563 -1.3967 1.4094 34 1 5.9758 -2.1584 3.0170 35 1 4.6763 -4.0388 2.0687 36 1 6.2312 -3.8589 1.2217 37 1 3.6570 -6.4788 -0.2689 38 1 4.2675 -5.6833 1.2019 39 1 2.7190 -5.1705 0.4897 40 1 5.0882 -7.7258 -2.4359 41 1 2.6999 -2.5694 -0.6132 42 1 2.6403 -3.2953 1.0108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309018784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = -10.697274 kcal Electronic energy + Delta-G solvation = -18416.202655 eV Core-core repulsion = 15816.350623 eV Total energy + Delta-G solvation = -2599.852032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.99508 -36.63244 -34.08925 -31.98407 -31.20094 -28.35124 -27.43286 -27.02630 -25.23656 -23.41933 -22.16002 -20.41037 -20.19316 -18.73409 -16.21922 -15.65193 -15.56800 -14.61795 -14.35531 -14.12013 -13.86108 -13.47524 -13.40308 -12.93270 -12.50054 -12.36512 -12.14724 -11.87661 -11.63475 -11.54241 -11.21411 -11.08967 -10.95352 -10.79641 -10.71431 -10.52214 -10.34767 -10.22767 -10.01722 -9.81689 -9.66225 -8.87177 -8.38903 -8.18143 -7.11539 -6.00980 -4.04771 3.30708 3.37381 3.41529 4.22797 4.42463 4.93955 5.06173 5.08705 5.30554 5.34359 5.34954 5.42762 5.59844 5.66212 5.75706 5.81468 5.83621 5.89919 5.97871 6.08291 6.16564 6.24009 6.30010 6.32573 6.38502 6.43278 6.54064 6.71054 6.80944 6.86303 6.89955 7.14181 7.24275 7.52939 7.57107 7.72804 7.84442 8.14752 8.40233 8.62010 9.01490 9.60393 11.06175 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.005868 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.172811 B = 4770.734653 C = 5106.028546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 C -0.137 4.137 4 N -0.682 5.682 5 C 0.089 3.911 6 H 0.081 0.919 7 C -0.101 4.101 8 C -0.118 4.118 9 C 0.061 3.939 10 N -0.527 5.527 11 C 0.211 3.789 12 H 0.036 0.964 13 C -0.170 4.170 14 C -0.499 4.499 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.032 3.968 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.337 0.663 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.029 0.971 39 H 0.005 0.995 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.739 11.302 5.863 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.035 4.035 3 C -0.195 4.195 4 N -0.313 5.313 5 C -0.021 4.021 6 H 0.099 0.901 7 C -0.139 4.139 8 C -0.157 4.157 9 C -0.067 4.067 10 N -0.251 5.251 11 C 0.105 3.895 12 H 0.054 0.946 13 C -0.230 4.230 14 C -0.538 4.538 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.099 4.099 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.281 12.053 5.749 14.360 hybrid contribution 0.104 -1.898 -0.358 1.934 sum -5.176 10.155 5.391 12.608 Atomic orbital electron populations 1.21976 0.95167 1.01825 1.02150 1.21508 0.94286 0.95487 0.92219 1.21781 1.01038 0.95399 1.01295 1.60791 1.04250 1.33053 1.33172 1.21666 0.89281 0.94379 0.96739 0.90081 1.21484 0.95860 1.00169 0.96417 1.21648 0.96535 0.97785 0.99729 1.21966 0.99981 0.94543 0.90195 1.62229 1.14476 1.29297 1.19133 1.19286 0.96405 0.82142 0.91672 0.94566 1.22385 0.95825 1.04690 1.00062 1.21124 0.91855 1.05157 1.35635 0.91898 1.24933 0.96885 0.96742 0.95750 1.69887 1.28746 1.15259 1.39567 0.86527 0.84610 0.78812 0.77647 1.20815 1.21320 1.19827 1.22666 0.92917 0.95141 0.99133 0.92042 0.92179 0.92811 0.93430 0.92272 0.92837 0.92968 0.84505 0.92200 0.92814 0.91651 0.92373 0.95944 0.89894 0.89430 0.95169 0.97569 0.93038 0.92287 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.17 37.16 0.34 -1.22 16 2 C 0.07 0.91 3.03 -67.71 -0.21 0.70 16 3 C -0.14 -1.53 9.39 37.16 0.35 -1.18 16 4 N -0.68 -9.04 6.07 -99.65 -0.60 -9.65 16 5 C 0.09 1.37 2.43 -67.63 -0.16 1.21 16 6 H 0.08 1.34 7.26 -51.93 -0.38 0.96 16 7 C -0.10 -1.49 5.61 -26.61 -0.15 -1.64 16 8 C -0.12 -1.88 6.09 -26.65 -0.16 -2.05 16 9 C 0.06 1.21 4.66 -3.83 -0.02 1.19 16 10 N -0.53 -11.33 4.63 -228.08 -1.06 -12.39 16 11 C 0.21 5.34 2.35 -68.86 -0.16 5.18 16 12 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 13 C -0.17 -4.17 8.28 37.16 0.31 -3.86 16 14 C -0.50 -13.64 7.85 -34.44 -0.27 -13.91 16 15 H 0.06 1.72 6.77 -52.49 -0.36 1.37 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 17 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 18 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 C 0.03 0.59 4.26 -3.83 -0.02 0.57 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.55 8.12 -51.92 -0.42 0.13 16 26 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.64 7.61 -51.93 -0.40 0.24 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.34 4.34 8.04 -39.29 -0.32 4.03 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.45 6.62 -51.93 -0.34 0.11 16 36 H 0.08 1.78 6.35 -51.93 -0.33 1.45 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 38 H 0.03 0.71 6.52 -51.93 -0.34 0.38 16 39 H 0.01 0.12 6.65 -51.93 -0.35 -0.22 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.12 7.49 -51.93 -0.39 0.74 16 42 H 0.02 0.47 6.70 -51.93 -0.35 0.12 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -27.62 314.27 -9.15 -36.77 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.59 Total: 2.65 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.24 Total: -13.51 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.03 Total: -46.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.62 -9.15 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309018784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.071 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds