Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46853 * 2 1 4 4 N 1.46902 * 109.47182 * 120.00001 * 2 1 3 5 5 C 1.46905 * 110.99679 * 153.65294 * 4 2 1 6 6 H 1.09000 * 109.53528 * 33.74869 * 5 4 2 7 7 C 1.53117 * 109.49907 * 153.84868 * 5 4 2 8 8 C 1.53125 * 109.15733 * 177.59591 * 7 5 4 9 9 C 1.53033 * 109.27664 * 302.34251 * 8 7 5 10 10 N 1.46849 * 109.52329 * 59.18244 * 9 8 7 11 11 C 1.46902 * 110.99997 * 174.16213 * 10 9 8 12 12 H 1.09003 * 109.47118 * 179.21198 * 11 10 9 13 13 C 1.52998 * 109.47430 * 59.20698 * 11 10 9 14 14 C 1.50707 * 109.46803 * 299.20570 * 11 10 9 15 15 H 1.07993 * 120.00007 * 359.72872 * 14 11 10 16 16 C 1.37878 * 119.99637 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00286 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99620 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47447 * 90.00500 * 18 16 14 20 20 H 1.48504 * 109.46910 * 210.00505 * 18 16 14 21 21 H 1.48500 * 109.47400 * 330.00164 * 18 16 14 22 22 C 1.46842 * 111.19593 * 298.25316 * 10 9 8 23 23 H 1.08994 * 109.47270 * 299.99514 * 1 2 3 24 24 H 1.08994 * 109.47535 * 59.99910 * 1 2 3 25 25 H 1.09007 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47270 * 240.00486 * 2 1 3 27 27 H 1.08998 * 109.46720 * 65.15410 * 3 2 1 28 28 H 1.09000 * 109.47026 * 185.14922 * 3 2 1 29 29 H 1.08995 * 109.47172 * 305.15625 * 3 2 1 30 30 H 1.00898 * 111.00209 * 29.69877 * 4 2 1 31 31 H 1.09003 * 109.52375 * 297.49426 * 7 5 4 32 32 H 1.08997 * 109.52813 * 57.62863 * 7 5 4 33 33 H 1.09000 * 109.50513 * 62.28395 * 8 7 5 34 34 H 1.09004 * 109.49851 * 182.40398 * 8 7 5 35 35 H 1.09005 * 109.46215 * 299.16490 * 9 8 7 36 36 H 1.08997 * 109.46340 * 179.19541 * 9 8 7 37 37 H 1.08996 * 109.47218 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47093 * 300.00335 * 13 11 10 39 39 H 1.08995 * 109.46946 * 59.99905 * 13 11 10 40 40 H 0.97001 * 120.00106 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46187 * 181.75326 * 22 10 9 42 42 H 1.08995 * 109.46920 * 301.73563 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3539 -1.2629 0.9701 6 1 3.9165 -0.6154 0.2976 7 6 4.0952 -1.3817 2.3045 8 6 5.4606 -2.0321 2.0647 9 6 5.2604 -3.3993 1.4068 10 7 4.5477 -3.2317 0.1339 11 6 4.4594 -4.5059 -0.5918 12 1 3.9149 -4.3561 -1.5241 13 6 3.7229 -5.5336 0.2697 14 6 5.8475 -5.0078 -0.8960 15 1 6.7089 -4.4352 -0.5856 16 6 6.0176 -6.1956 -1.5751 17 7 4.9686 -6.8903 -1.9578 18 14 7.7381 -6.8181 -1.9515 19 1 8.2093 -7.6764 -0.8351 20 1 7.7143 -7.6092 -3.2081 21 1 8.6584 -5.6636 -2.1109 22 6 3.2148 -2.6524 0.3439 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.7539 1.9290 0.9326 28 1 3.1260 1.4440 -0.0922 29 1 1.6032 1.9824 -0.8402 30 1 1.3688 -1.4035 1.4976 31 1 4.2349 -0.3894 2.7333 32 1 3.5134 -1.9967 2.9911 33 1 6.0563 -1.3967 1.4094 34 1 5.9758 -2.1584 3.0170 35 1 4.6763 -4.0388 2.0687 36 1 6.2312 -3.8589 1.2217 37 1 3.6570 -6.4788 -0.2689 38 1 4.2675 -5.6833 1.2019 39 1 2.7190 -5.1705 0.4897 40 1 5.0882 -7.7258 -2.4359 41 1 2.6999 -2.5694 -0.6132 42 1 2.6403 -3.2953 1.0108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309018784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = -28.627806 kcal Electronic energy + Delta-G solvation = -18416.980181 eV Core-core repulsion = 15816.350623 eV Total energy + Delta-G solvation = -2600.629558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45179 -37.94250 -35.72519 -33.80182 -32.46198 -30.16379 -28.64867 -28.00447 -27.29856 -25.07702 -23.54797 -21.86422 -21.43487 -20.26874 -18.21795 -17.29303 -16.69724 -16.28097 -15.69027 -15.52479 -15.35763 -15.03435 -14.87227 -14.45462 -13.85045 -13.62587 -13.51322 -13.25138 -12.92874 -12.90923 -12.74930 -12.67440 -12.49315 -12.38057 -12.19107 -12.11635 -11.96403 -11.71269 -11.53567 -11.28269 -11.20889 -10.87237 -10.51315 -9.36573 -8.86137 -8.12576 -6.23874 1.41512 1.42340 1.53202 2.41645 3.07744 3.16631 3.47157 3.94109 3.99326 4.12389 4.18236 4.26731 4.37339 4.43533 4.46998 4.67194 4.68921 4.78378 4.83242 4.85178 4.85717 4.96531 5.00641 5.02589 5.06968 5.11059 5.16013 5.21548 5.29782 5.37839 5.44236 5.49186 5.53503 5.68785 5.76952 6.10239 6.20970 6.46028 6.50549 6.75815 6.90307 7.45654 8.93770 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.005868 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.172811 B = 4770.734653 C = 5106.028546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 C -0.133 4.133 4 N -0.673 5.673 5 C 0.102 3.898 6 H 0.071 0.929 7 C -0.094 4.094 8 C -0.110 4.110 9 C 0.063 3.937 10 N -0.537 5.537 11 C 0.215 3.785 12 H -0.001 1.001 13 C -0.154 4.154 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.037 3.963 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.340 0.660 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 12.614 7.049 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 C -0.191 4.191 4 N -0.304 5.304 5 C -0.009 4.009 6 H 0.089 0.911 7 C -0.133 4.133 8 C -0.148 4.148 9 C -0.065 4.065 10 N -0.261 5.261 11 C 0.108 3.892 12 H 0.017 0.983 13 C -0.214 4.214 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.093 4.093 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.160 13.385 6.949 15.940 hybrid contribution 0.012 -2.283 -0.748 2.402 sum -5.147 11.103 6.201 13.719 Atomic orbital electron populations 1.21930 0.93394 1.02009 1.03210 1.21611 0.95782 0.95757 0.90829 1.21744 1.00349 0.94705 1.02253 1.60857 1.03407 1.32615 1.33482 1.21504 0.90618 0.91956 0.96812 0.91110 1.21443 0.94852 1.01165 0.95795 1.21595 0.97629 0.95183 1.00395 1.21974 0.98332 0.96916 0.89273 1.62135 1.16466 1.27214 1.20289 1.19040 0.95159 0.84109 0.90916 0.98299 1.22165 0.96633 1.03139 0.99431 1.21373 0.92575 1.05444 1.35853 0.92383 1.25720 1.00627 0.96929 0.95545 1.70018 1.30682 1.15541 1.40021 0.85514 0.80069 0.78259 0.77541 1.20033 1.21005 1.19346 1.22709 0.91115 0.96834 0.98648 0.91094 0.90996 0.93094 0.95550 0.91694 0.93946 0.91496 0.84105 0.90193 0.92414 0.91902 0.89842 0.96456 0.92121 0.92072 0.95005 0.96037 0.92983 0.93743 0.95994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.17 71.98 0.66 -2.06 16 2 C 0.07 1.61 3.03 44.92 0.14 1.74 16 3 C -0.13 -2.72 9.39 71.98 0.68 -2.04 16 4 N -0.67 -16.70 6.07 -469.18 -2.85 -19.54 16 5 C 0.10 3.00 2.43 44.97 0.11 3.11 16 6 H 0.07 2.27 7.26 -2.39 -0.02 2.26 16 7 C -0.09 -2.54 5.61 30.68 0.17 -2.37 16 8 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 9 C 0.06 2.46 4.66 86.32 0.40 2.86 16 10 N -0.54 -23.38 4.63 -875.51 -4.06 -27.44 16 11 C 0.22 11.21 2.35 44.17 0.10 11.31 16 12 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 13 C -0.15 -7.70 8.28 71.98 0.60 -7.11 16 14 C -0.51 -28.66 7.85 25.60 0.20 -28.46 16 15 H 0.06 3.23 6.77 -2.91 -0.02 3.21 16 16 C 0.01 0.56 5.30 84.66 0.45 1.01 16 17 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 18 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.04 1.37 4.26 86.33 0.37 1.74 16 23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 0.96 8.12 -2.38 -0.02 0.94 16 26 H 0.03 0.73 7.22 -2.39 -0.02 0.71 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 0.95 7.61 -2.39 -0.02 0.93 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.34 8.17 8.04 -89.70 -0.72 7.45 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.02 0.69 6.62 -2.38 -0.02 0.67 16 36 H 0.06 2.61 6.35 -2.39 -0.02 2.60 16 37 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 38 H 0.03 1.53 6.52 -2.39 -0.02 1.51 16 39 H 0.02 0.95 6.65 -2.39 -0.02 0.94 16 40 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.04 1.74 7.49 -2.39 -0.02 1.72 16 42 H 0.02 0.82 6.70 -2.39 -0.02 0.80 16 Total: -1.00 -59.61 314.27 -0.32 -59.93 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.25 Total: 17.83 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.06 Total: -23.35 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -6.66 Total: -100.50 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -59.61 -0.32 -59.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309018784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.304 kcal (2) G-P(sol) polarization free energy of solvation -59.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds