Wall clock time and date at job start Mon Mar 30 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46581 * 2 1 4 4 N 1.46903 * 109.47122 * 119.99676 * 2 1 3 5 5 C 1.46906 * 110.99617 * 156.80229 * 4 2 1 6 6 H 1.09002 * 109.50424 * 32.88805 * 5 4 2 7 7 C 1.53116 * 109.50375 * 272.80766 * 5 4 2 8 8 C 1.53111 * 109.16250 * 182.36810 * 7 5 4 9 9 C 1.53039 * 109.27970 * 57.65278 * 8 7 5 10 10 N 1.46851 * 109.51144 * 300.82538 * 9 8 7 11 11 C 1.46898 * 110.99840 * 185.83093 * 10 9 8 12 12 H 1.09005 * 109.47202 * 296.04967 * 11 10 9 13 13 C 1.53003 * 109.47286 * 176.05012 * 11 10 9 14 14 C 1.50703 * 109.47294 * 56.05139 * 11 10 9 15 15 H 1.08004 * 119.99524 * 5.63907 * 14 11 10 16 16 C 1.37873 * 120.00441 * 185.64307 * 14 11 10 17 17 N 1.31513 * 120.00067 * 8.60859 * 16 14 11 18 18 Si 1.86795 * 120.00105 * 188.61488 * 16 14 11 19 19 H 1.48503 * 109.47064 * 94.99077 * 18 16 14 20 20 H 1.48504 * 109.47172 * 214.98611 * 18 16 14 21 21 H 1.48499 * 109.47362 * 334.98974 * 18 16 14 22 22 C 1.46828 * 111.20592 * 61.75066 * 10 9 8 23 23 H 1.08992 * 109.47396 * 304.81570 * 1 2 3 24 24 H 1.09004 * 109.47223 * 64.82421 * 1 2 3 25 25 H 1.09003 * 109.46828 * 184.81744 * 1 2 3 26 26 H 1.08997 * 109.47374 * 240.00273 * 2 1 3 27 27 H 1.09007 * 109.47255 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47373 * 299.99590 * 3 2 1 29 29 H 1.09003 * 109.47628 * 60.00419 * 3 2 1 30 30 H 1.00893 * 110.99710 * 32.85336 * 4 2 1 31 31 H 1.08997 * 109.52613 * 62.45817 * 7 5 4 32 32 H 1.09005 * 109.52142 * 302.27403 * 7 5 4 33 33 H 1.09001 * 109.50297 * 297.71573 * 8 7 5 34 34 H 1.09001 * 109.51010 * 177.59318 * 8 7 5 35 35 H 1.08997 * 109.46254 * 60.83979 * 9 8 7 36 36 H 1.09003 * 109.46297 * 180.81793 * 9 8 7 37 37 H 1.09002 * 109.47018 * 65.91625 * 13 11 10 38 38 H 1.09003 * 109.47250 * 185.91659 * 13 11 10 39 39 H 1.09004 * 109.47097 * 305.91740 * 13 11 10 40 40 H 0.97003 * 120.00724 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.46135 * 178.23132 * 22 10 9 42 42 H 1.08997 * 109.45927 * 58.26144 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.3837 -1.1984 0.9953 6 1 3.9282 -0.5214 0.3370 7 6 3.3229 -2.5902 0.3601 8 6 4.7456 -3.1345 0.2052 9 6 5.4255 -3.1690 1.5758 10 7 5.4592 -1.8140 2.1409 11 6 6.2266 -1.7848 3.3931 12 1 5.7255 -2.3996 4.1408 13 6 6.3228 -0.3439 3.8989 14 6 7.6120 -2.3239 3.1459 15 1 7.9246 -2.5696 2.1418 16 6 8.4805 -2.5034 4.2016 17 7 8.0507 -2.3674 5.4371 18 14 10.2676 -2.9396 3.8772 19 1 11.0868 -1.7010 3.8748 20 1 10.7551 -3.8535 4.9413 21 1 10.3816 -3.6109 2.5575 22 6 4.1029 -1.2890 2.3430 23 1 -0.3634 0.5867 0.8436 24 1 -0.3634 0.4372 -0.9301 25 1 -0.3633 -1.0241 0.0863 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.3942 -1.4373 1.4677 31 1 2.8498 -2.5233 -0.6196 32 1 2.7452 -3.2576 0.9997 33 1 5.3116 -2.4880 -0.4655 34 1 4.7067 -4.1428 -0.2072 35 1 4.8668 -3.8265 2.2419 36 1 6.4437 -3.5425 1.4669 37 1 5.3302 0.0104 4.1771 38 1 6.9788 -0.3072 4.7686 39 1 6.7278 0.2914 3.1111 40 1 8.6617 -2.4934 6.1799 41 1 4.1606 -0.2971 2.7914 42 1 3.5506 -1.9553 3.0055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309018787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:54 Heat of formation + Delta-G solvation = -29.757291 kcal Electronic energy + Delta-G solvation = -18309.104448 eV Core-core repulsion = 15708.425912 eV Total energy + Delta-G solvation = -2600.678537 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33160 -37.92278 -35.68001 -33.75078 -32.55088 -30.35418 -28.96228 -28.02176 -27.01294 -25.09190 -23.02556 -21.86320 -21.34136 -20.55524 -18.34049 -17.38890 -16.68142 -16.26040 -15.66438 -15.61600 -15.47739 -14.89828 -14.49163 -14.25809 -14.11636 -13.80325 -13.55605 -13.32329 -12.93065 -12.84095 -12.72917 -12.50621 -12.39808 -12.31795 -12.16339 -12.02253 -11.93008 -11.80455 -11.63615 -11.53497 -11.08243 -10.76476 -10.54113 -9.27044 -8.91095 -8.13923 -6.22274 1.41678 1.43488 1.53627 2.42433 3.00511 3.17048 3.58303 3.89899 3.98758 4.11754 4.16313 4.19387 4.41676 4.49137 4.54492 4.68682 4.72717 4.79470 4.85283 4.86847 4.94946 4.98484 4.99257 5.03171 5.04170 5.07818 5.16369 5.24274 5.28648 5.36736 5.41301 5.45628 5.50452 5.71943 5.73708 6.18383 6.22291 6.41948 6.56931 6.78966 6.93999 7.46116 8.95206 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040306 B = 0.005491 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.520094 B = 5097.768725 C = 5423.407038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 C -0.140 4.140 4 N -0.689 5.689 5 C 0.105 3.895 6 H 0.074 0.926 7 C -0.136 4.136 8 C -0.104 4.104 9 C 0.064 3.936 10 N -0.537 5.537 11 C 0.216 3.784 12 H -0.039 1.039 13 C -0.112 4.112 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.071 3.929 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.344 0.656 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.004 0.996 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 2.369 -12.079 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 C -0.198 4.198 4 N -0.321 5.321 5 C -0.005 4.005 6 H 0.093 0.907 7 C -0.175 4.175 8 C -0.142 4.142 9 C -0.065 4.065 10 N -0.262 5.262 11 C 0.109 3.891 12 H -0.021 1.021 13 C -0.171 4.171 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.058 4.058 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.022 0.978 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -12.480 3.257 -11.924 17.565 hybrid contribution 0.610 -1.530 0.637 1.766 sum -11.870 1.727 -11.287 16.470 Atomic orbital electron populations 1.21909 0.93208 1.02360 1.02887 1.21551 0.95754 0.95033 0.90740 1.21814 1.00320 0.95695 1.01933 1.60452 1.02599 1.33029 1.36031 1.21367 0.89438 0.94761 0.94935 0.90742 1.22204 0.97181 0.96893 1.01253 1.21504 0.95483 1.01577 0.95679 1.21956 1.00081 0.89136 0.95291 1.61956 1.12966 1.22401 1.28905 1.19018 0.92195 0.92838 0.85033 1.02116 1.21566 0.98304 0.97421 0.99770 1.21372 0.98167 1.42480 0.93527 0.92208 1.25728 1.02809 0.95407 0.94717 1.70102 1.36281 1.51052 0.98880 0.85540 0.80099 0.78039 0.77945 1.20153 1.21084 1.19047 1.21947 0.88331 0.98984 0.96492 0.92218 0.90695 0.92196 0.93798 0.94278 0.91014 0.92778 0.83692 0.90314 0.92240 0.91550 0.90180 0.97797 0.91810 0.95258 0.93943 0.94128 0.92960 0.91850 0.97626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.25 71.98 0.67 -1.55 16 2 C 0.08 1.56 3.05 44.91 0.14 1.70 16 3 C -0.14 -2.90 9.38 71.98 0.68 -2.22 16 4 N -0.69 -16.99 6.06 -469.20 -2.85 -19.84 16 5 C 0.11 3.09 2.43 44.96 0.11 3.20 16 6 H 0.07 2.33 6.99 -2.39 -0.02 2.32 16 7 C -0.14 -3.52 5.25 30.67 0.16 -3.36 16 8 C -0.10 -3.10 6.09 30.64 0.19 -2.91 16 9 C 0.06 2.57 5.21 86.33 0.45 3.02 16 10 N -0.54 -23.80 4.52 -875.54 -3.96 -27.76 16 11 C 0.22 11.48 1.93 44.17 0.09 11.56 16 12 H -0.04 -2.34 8.09 -2.38 -0.02 -2.36 16 13 C -0.11 -5.68 8.67 71.98 0.62 -5.06 16 14 C -0.52 -29.07 7.63 25.60 0.20 -28.88 16 15 H 0.06 3.33 6.68 -2.91 -0.02 3.32 16 16 C 0.01 0.68 5.17 84.65 0.44 1.12 16 17 N -0.92 -54.84 12.13 21.45 0.26 -54.58 16 18 Si 0.96 44.31 29.55 68.60 2.03 46.34 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 C 0.07 2.73 4.82 86.33 0.42 3.15 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.06 0.83 8.03 -2.39 -0.02 0.81 16 26 H 0.04 0.87 7.31 -2.39 -0.02 0.85 16 27 H 0.04 0.94 7.32 -2.38 -0.02 0.92 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.34 7.70 7.99 -89.70 -0.72 6.98 16 31 H 0.08 1.67 7.60 -2.39 -0.02 1.65 16 32 H 0.06 1.53 8.09 -2.38 -0.02 1.51 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.06 2.83 6.15 -2.39 -0.01 2.82 16 37 H 0.03 1.34 6.60 -2.39 -0.02 1.32 16 38 H 0.04 2.33 6.77 -2.39 -0.02 2.31 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.06 2.57 6.13 -2.39 -0.01 2.56 16 42 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -61.74 317.78 -0.12 -61.86 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.25 Total: 14.21 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 4.14 Total: -20.23 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -6.54 Total: -102.18 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.74 -0.12 -61.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309018787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.106 kcal (2) G-P(sol) polarization free energy of solvation -61.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds