Wall clock time and date at job start Mon Mar 30 2020 03:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.46851 * 110.99898 * 45.79011 * 3 2 1 5 5 C 1.53039 * 109.52490 * 185.83779 * 4 3 2 6 6 C 1.53116 * 109.27694 * 300.82213 * 5 4 3 7 7 H 1.08997 * 109.57899 * 297.71409 * 6 5 4 8 8 N 1.46906 * 109.52306 * 177.55780 * 6 5 4 9 9 C 1.46898 * 110.99964 * 85.31715 * 8 6 5 10 10 C 1.53002 * 109.46830 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99864 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00044 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99662 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00016 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47057 * 59.99683 * 15 13 11 17 17 H 1.48498 * 109.46918 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47216 * 299.99838 * 15 13 11 19 19 C 1.53121 * 109.16460 * 57.65281 * 6 5 4 20 20 C 1.46842 * 111.00041 * 169.99637 * 3 2 1 21 21 H 1.09007 * 109.45854 * 54.15867 * 20 3 2 22 22 C 1.52999 * 109.46627 * 294.17884 * 20 3 2 23 23 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99633 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99996 * 2 1 3 27 27 H 1.09001 * 109.46832 * 120.00187 * 2 1 3 28 28 H 1.08996 * 109.46471 * 305.85679 * 4 3 2 29 29 H 1.09004 * 109.45929 * 65.82278 * 4 3 2 30 30 H 1.08992 * 109.50519 * 180.88071 * 5 4 3 31 31 H 1.09002 * 109.53120 * 60.77905 * 5 4 3 32 32 H 1.00902 * 110.99362 * 321.35929 * 8 6 5 33 33 H 1.08996 * 109.47005 * 300.00136 * 9 8 6 34 34 H 1.09001 * 109.47032 * 59.99966 * 9 8 6 35 35 H 1.08999 * 109.46857 * 299.99402 * 10 9 8 36 36 H 1.08993 * 109.46915 * 60.00157 * 10 9 8 37 37 H 0.96998 * 119.99660 * 180.02562 * 14 13 11 38 38 H 1.08994 * 109.50961 * 182.40006 * 19 6 5 39 39 H 1.09008 * 109.53352 * 62.30425 * 19 6 5 40 40 H 1.09000 * 109.46872 * 59.99864 * 22 20 3 41 41 H 1.09002 * 109.47095 * 179.97438 * 22 20 3 42 42 H 1.08995 * 109.47264 * 299.99938 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1998 0.9827 5 6 1.7264 3.6621 0.8541 6 6 3.2354 3.7656 1.0923 7 1 3.4683 3.4403 2.1062 8 7 3.6664 5.1585 0.9126 9 6 3.4895 5.9283 2.1512 10 6 3.9475 7.3705 1.9251 11 6 3.7666 8.1600 3.1959 12 1 3.3647 7.6811 4.0766 13 6 4.1131 9.4940 3.2340 14 7 4.6019 10.0773 2.1614 15 14 3.8882 10.4728 4.8090 16 1 4.6986 9.8605 5.8923 17 1 4.3328 11.8726 4.5896 18 1 2.4549 10.4633 5.1974 19 6 3.9656 2.8704 0.0873 20 6 3.4679 1.4311 0.2381 21 1 3.9755 0.7937 -0.4860 22 6 3.7680 0.9337 1.6536 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.2223 2.1206 0.7996 29 1 1.5178 1.8418 1.9876 30 1 1.1991 4.2641 1.5940 31 1 1.4901 4.0254 -0.1460 32 1 3.1768 5.5921 0.1442 33 1 2.4373 5.9219 2.4358 34 1 4.0837 5.4784 2.9466 35 1 4.9996 7.3772 1.6403 36 1 3.3529 7.8200 1.1299 37 1 4.8460 11.0156 2.1883 38 1 5.0378 2.9068 0.2793 39 1 3.7652 3.2205 -0.9254 40 1 3.4145 -0.0918 1.7609 41 1 4.8431 0.9675 1.8303 42 1 3.2602 1.5707 2.3778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309037146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:23 Heat of formation + Delta-G solvation = -31.076608 kcal Electronic energy + Delta-G solvation = -17812.960685 eV Core-core repulsion = 15212.224939 eV Total energy + Delta-G solvation = -2600.735746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89419 -37.63589 -35.40682 -34.05421 -32.76846 -31.12669 -29.27289 -28.20760 -26.13465 -24.65520 -23.28549 -22.48962 -21.98554 -19.56680 -18.53637 -17.53028 -16.53505 -16.31981 -16.14324 -15.87647 -15.56662 -14.97930 -14.69689 -14.47176 -14.11639 -14.03086 -13.85415 -13.23198 -13.08784 -12.87311 -12.77444 -12.63533 -12.55145 -12.40901 -12.15917 -12.03641 -11.89401 -11.81210 -11.49999 -11.34953 -11.33475 -10.90723 -10.56297 -9.21172 -9.11976 -8.20453 -6.32382 1.39800 1.43339 1.51338 2.40335 2.97288 3.12694 3.32669 3.78511 3.88528 4.11082 4.13834 4.22987 4.29378 4.39389 4.48681 4.50154 4.54356 4.59825 4.62883 4.66547 4.70143 4.86145 4.95588 5.00436 5.05979 5.07897 5.14227 5.17295 5.19505 5.29387 5.33582 5.44364 5.46583 5.68031 5.79430 6.15701 6.20263 6.24212 6.31542 6.56901 6.84792 7.36879 8.91607 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.047426 B = 0.004064 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.254942 B = 6887.743822 C = 7039.738506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.045 3.955 3 N -0.540 5.540 4 C 0.057 3.943 5 C -0.140 4.140 6 C 0.087 3.913 7 H 0.066 0.934 8 N -0.692 5.692 9 C 0.087 3.913 10 C 0.032 3.968 11 C -0.547 4.547 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.092 4.092 20 C 0.086 3.914 21 H 0.093 0.907 22 C -0.185 4.185 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.018 0.982 34 H 0.053 0.947 35 H -0.007 1.007 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -21.383 -3.251 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.082 4.082 3 N -0.265 5.265 4 C -0.071 4.071 5 C -0.180 4.180 6 C -0.023 4.023 7 H 0.084 0.916 8 N -0.322 5.322 9 C -0.042 4.042 10 C -0.005 4.005 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.130 4.130 20 C -0.023 4.023 21 H 0.111 0.889 22 C -0.244 4.244 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.012 0.988 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.088 -21.159 -3.659 22.319 hybrid contribution -0.694 0.781 1.394 1.742 sum -6.781 -20.378 -2.265 21.596 Atomic orbital electron populations 1.21920 0.94501 1.02557 1.02123 1.22190 0.96183 0.88500 1.01303 1.62246 1.03537 1.11224 1.49484 1.22092 0.99163 0.92067 0.93821 1.22247 0.96848 0.97104 1.01794 1.21686 0.92908 0.88397 0.99285 0.91609 1.60611 1.62346 1.02511 1.06729 1.21753 0.97210 0.93969 0.91226 1.18916 0.94991 0.91201 0.95433 1.21589 1.42791 0.95787 0.98345 0.92206 1.25991 0.94605 0.99087 1.00061 1.70105 1.44188 1.12298 1.30579 0.85467 0.79017 0.77262 0.79090 1.19145 1.20722 1.19078 1.21494 0.99389 0.93138 0.98987 1.21645 0.88165 0.96254 0.96216 0.88894 1.22461 1.02598 1.01298 0.98021 0.90871 0.92590 0.92380 0.90180 0.94146 0.89406 0.94589 0.92633 0.91557 0.84477 0.96414 0.92833 0.98844 0.99103 0.92702 0.91483 0.91861 0.91566 0.91621 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.16 71.98 0.66 -1.46 16 2 C 0.05 0.71 5.87 86.30 0.51 1.22 16 3 N -0.54 -10.90 4.75 -871.10 -4.14 -15.04 16 4 C 0.06 1.22 4.55 86.33 0.39 1.61 16 5 C -0.14 -3.68 5.35 30.65 0.16 -3.52 16 6 C 0.09 2.54 2.23 44.99 0.10 2.64 16 7 H 0.07 2.01 6.22 -2.39 -0.01 1.99 16 8 N -0.69 -25.49 6.25 -491.15 -3.07 -28.56 16 9 C 0.09 3.80 5.42 86.30 0.47 4.27 16 10 C 0.03 1.76 5.23 29.85 0.16 1.92 16 11 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.00 0.03 5.46 84.66 0.46 0.50 16 14 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 15 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C -0.09 -2.31 5.22 30.65 0.16 -2.15 16 20 C 0.09 1.75 2.93 44.94 0.13 1.88 16 21 H 0.09 1.69 8.12 -2.38 -0.02 1.67 16 22 C -0.19 -3.53 8.20 71.98 0.59 -2.93 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.80 6.21 -2.39 -0.01 0.78 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 0.61 6.07 -2.39 -0.01 0.59 16 28 H 0.09 1.71 5.81 -2.39 -0.01 1.69 16 29 H 0.04 0.78 6.19 -2.39 -0.01 0.76 16 30 H 0.05 1.55 7.54 -2.39 -0.02 1.54 16 31 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.34 12.31 8.45 -89.69 -0.76 11.55 16 33 H 0.02 0.75 7.51 -2.39 -0.02 0.74 16 34 H 0.05 2.34 8.06 -2.39 -0.02 2.32 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.07 1.08 6.36 -2.39 -0.02 1.07 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.10 4.80 -2.39 -0.01 1.09 16 Total: -1.00 -63.74 314.50 -0.66 -64.40 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.22 Total: 17.63 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 4.02 Total: -27.68 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -6.93 Total: -101.15 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.74 -0.66 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309037146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.322 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds