Wall clock time and date at job start Mon Mar 30 2020 03:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47601 * 2 1 4 4 C 1.46844 * 110.99934 * 175.89342 * 3 2 1 5 5 C 1.53044 * 109.52013 * 174.16437 * 4 3 2 6 6 C 1.53119 * 109.27744 * 59.17568 * 5 4 3 7 7 H 1.09001 * 109.52509 * 62.25412 * 6 5 4 8 8 N 1.46907 * 109.51964 * 182.37678 * 6 5 4 9 9 C 1.46898 * 110.99956 * 274.87414 * 8 6 5 10 10 C 1.52996 * 109.47072 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47392 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00228 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99915 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99924 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47179 * 90.00136 * 15 13 11 17 17 H 1.48502 * 109.47064 * 209.99906 * 15 13 11 18 18 H 1.48500 * 109.47231 * 329.99792 * 15 13 11 19 19 C 1.53112 * 109.21632 * 302.31209 * 6 5 4 20 20 C 1.46845 * 110.99720 * 51.67979 * 3 2 1 21 21 H 1.09001 * 109.46502 * 305.85575 * 20 3 2 22 22 C 1.53005 * 109.46248 * 65.83634 * 20 3 2 23 23 H 1.09004 * 109.46801 * 293.27819 * 1 2 3 24 24 H 1.08999 * 109.46844 * 53.27514 * 1 2 3 25 25 H 1.09000 * 109.47500 * 173.27315 * 1 2 3 26 26 H 1.09002 * 109.46929 * 239.99903 * 2 1 3 27 27 H 1.08999 * 109.47186 * 120.00546 * 2 1 3 28 28 H 1.08995 * 109.46547 * 54.14641 * 4 3 2 29 29 H 1.09008 * 109.45041 * 294.16796 * 4 3 2 30 30 H 1.08994 * 109.50014 * 299.23395 * 5 4 3 31 31 H 1.09001 * 109.53146 * 179.13900 * 5 4 3 32 32 H 1.00897 * 111.00091 * 150.91694 * 8 6 5 33 33 H 1.09000 * 109.47496 * 299.99960 * 9 8 6 34 34 H 1.09006 * 109.47046 * 60.00003 * 9 8 6 35 35 H 1.09001 * 109.47473 * 299.99745 * 10 9 8 36 36 H 1.08998 * 109.47577 * 59.99772 * 10 9 8 37 37 H 0.96997 * 119.99873 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.50700 * 177.62884 * 19 6 5 39 39 H 1.09008 * 109.50576 * 297.75031 * 19 6 5 40 40 H 1.08996 * 109.47057 * 64.27052 * 22 20 3 41 41 H 1.09003 * 109.47202 * 184.27446 * 22 20 3 42 42 H 1.09002 * 109.47124 * 304.27253 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4844 1.4251 0.0982 5 6 3.9674 2.8697 -0.0508 6 6 3.3395 3.7287 1.0503 7 1 3.6680 3.3685 2.0252 8 7 3.7546 5.1274 0.8784 9 6 5.0535 5.3736 1.5189 10 6 5.4517 6.8371 1.3185 11 6 6.7845 7.0896 1.9750 12 1 7.2961 6.2866 2.4847 13 6 7.3502 8.3460 1.9260 14 7 6.7270 9.3240 1.3059 15 14 9.0019 8.6590 2.7405 16 1 10.0916 8.4020 1.7648 17 1 9.0691 10.0705 3.1970 18 1 9.1581 7.7535 3.9070 19 6 1.8143 3.6325 0.9565 20 6 1.3938 2.1644 1.0756 21 1 0.3094 2.0899 0.9944 22 6 1.8425 1.6147 2.4311 23 1 -0.3633 0.4062 0.9441 24 1 -0.3633 0.6145 -0.8237 25 1 -0.3634 -1.0206 -0.1204 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9184 0.8137 -0.6929 29 1 3.7940 1.0369 1.0686 30 1 3.6700 3.2540 -1.0263 31 1 5.0534 2.9017 0.0374 32 1 3.0517 5.7592 1.2316 33 1 4.9793 5.1596 2.5851 34 1 5.8081 4.7274 1.0703 35 1 5.5262 7.0508 0.2522 36 1 4.6973 7.4837 1.7667 37 1 7.1252 10.2078 1.2711 38 1 1.3629 4.2086 1.7641 39 1 1.4830 4.0289 -0.0034 40 1 2.9172 1.7581 2.5436 41 1 1.3200 2.1431 3.2285 42 1 1.6101 0.5512 2.4869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309037147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:25 Heat of formation + Delta-G solvation = -12.742275 kcal Electronic energy + Delta-G solvation = -17811.102730 eV Core-core repulsion = 15211.162020 eV Total energy + Delta-G solvation = -2599.940710 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.90103 -36.24561 -33.60585 -32.30241 -31.83823 -29.97247 -27.90130 -27.18551 -24.32482 -23.11424 -22.82586 -20.90424 -20.41932 -18.39300 -16.57796 -16.15724 -15.68604 -15.31238 -14.64801 -14.39531 -14.25433 -13.67407 -13.56250 -13.16820 -12.74370 -12.70058 -12.48112 -12.29461 -12.00167 -11.67099 -11.42237 -11.29393 -11.15420 -11.00362 -10.89726 -10.85260 -10.61515 -10.35022 -10.07381 -9.81094 -9.29391 -9.10339 -8.32961 -8.30561 -7.74250 -5.97474 -3.99941 3.33414 3.39324 3.42493 3.81856 4.44304 4.64387 4.71024 4.83914 4.96943 5.00997 5.18075 5.25363 5.28262 5.34470 5.38318 5.40408 5.54355 5.57842 5.60862 5.76970 5.81664 5.85835 5.87821 5.99292 6.09354 6.11962 6.20980 6.34324 6.39294 6.45790 6.64883 7.03014 7.08186 7.09601 7.56398 7.77418 7.87457 8.02466 8.13077 8.46830 9.07475 9.63630 11.13987 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.057345 B = 0.003963 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.159018 B = 7063.586640 C = 7151.806490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.103 4.103 6 C 0.085 3.915 7 H 0.036 0.964 8 N -0.687 5.687 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.112 4.112 20 C 0.081 3.919 21 H 0.086 0.914 22 C -0.191 4.191 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.336 0.664 33 H 0.012 0.988 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.001 -17.743 -0.785 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 N -0.255 5.255 4 C -0.075 4.075 5 C -0.141 4.141 6 C -0.025 4.025 7 H 0.054 0.946 8 N -0.318 5.318 9 C -0.061 4.061 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.151 4.151 20 C -0.028 4.028 21 H 0.104 0.896 22 C -0.249 4.249 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.836 -17.441 -1.899 21.163 hybrid contribution 0.980 -0.131 2.212 2.423 sum -10.856 -17.572 0.313 20.657 Atomic orbital electron populations 1.21878 0.95157 1.01665 1.02361 1.22062 0.95740 0.89610 1.00496 1.62234 1.06365 1.11379 1.45485 1.22128 0.87237 0.98128 0.99965 1.21558 0.99845 0.92457 1.00281 1.21556 0.93746 0.90474 0.96695 0.94591 1.60592 1.05776 1.02597 1.62824 1.22177 0.88750 1.01050 0.94115 1.19066 0.95733 0.88578 0.97850 1.21185 1.04664 0.95396 1.34758 0.92840 1.25004 0.97597 0.96254 0.95528 1.69973 1.38513 1.01742 1.43020 0.86595 0.84324 0.77361 0.79712 1.20622 1.21228 1.19958 1.21799 0.95696 0.94787 1.02783 1.21733 0.99152 0.93542 0.88409 0.89638 1.22535 1.02707 1.00946 0.98757 0.92629 0.91627 0.92461 0.90924 0.95035 0.91003 0.94811 0.90488 0.91584 0.84658 0.96946 0.92474 0.95641 0.96869 0.93009 0.91866 0.90270 0.91758 0.92154 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.15 37.16 0.34 -0.87 16 2 C 0.05 0.45 5.36 -3.82 -0.02 0.43 16 3 N -0.53 -5.94 4.71 -226.60 -1.07 -7.01 16 4 C 0.05 0.64 5.17 -3.83 -0.02 0.62 16 5 C -0.10 -1.47 5.59 -26.65 -0.15 -1.62 16 6 C 0.09 1.28 2.25 -67.59 -0.15 1.13 16 7 H 0.04 0.56 6.12 -51.93 -0.32 0.25 16 8 N -0.69 -12.55 6.31 -106.60 -0.67 -13.22 16 9 C 0.07 1.45 5.42 -3.83 -0.02 1.43 16 10 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 11 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.42 4.89 -26.58 -0.13 -1.55 16 20 C 0.08 0.88 2.50 -67.65 -0.17 0.71 16 21 H 0.09 0.86 5.99 -51.93 -0.31 0.55 16 22 C -0.19 -1.99 8.25 37.16 0.31 -1.68 16 23 H 0.05 0.43 6.62 -51.93 -0.34 0.09 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.29 6.78 -51.93 -0.35 -0.06 16 28 H 0.07 0.79 8.12 -51.93 -0.42 0.36 16 29 H 0.03 0.40 6.29 -51.92 -0.33 0.07 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 32 H 0.34 5.93 8.36 -39.29 -0.33 5.60 16 33 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 34 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 40 H 0.06 0.75 4.82 -51.93 -0.25 0.50 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.51 6.54 -51.93 -0.34 0.17 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -30.00 315.60 -9.38 -39.38 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.54 Total: 0.41 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.57 Total: -14.67 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -1.00 Total: -46.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.00 -9.38 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309037147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.634 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds