Wall clock time and date at job start Mon Mar 30 2020 03:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47601 * 2 1 4 4 C 1.46844 * 110.99934 * 175.89342 * 3 2 1 5 5 C 1.53044 * 109.52013 * 174.16437 * 4 3 2 6 6 C 1.53119 * 109.27744 * 59.17568 * 5 4 3 7 7 H 1.09001 * 109.52509 * 62.25412 * 6 5 4 8 8 N 1.46907 * 109.51964 * 182.37678 * 6 5 4 9 9 C 1.46898 * 110.99956 * 274.87414 * 8 6 5 10 10 C 1.52996 * 109.47072 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47392 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00228 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99915 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99924 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47179 * 90.00136 * 15 13 11 17 17 H 1.48502 * 109.47064 * 209.99906 * 15 13 11 18 18 H 1.48500 * 109.47231 * 329.99792 * 15 13 11 19 19 C 1.53112 * 109.21632 * 302.31209 * 6 5 4 20 20 C 1.46845 * 110.99720 * 51.67979 * 3 2 1 21 21 H 1.09001 * 109.46502 * 305.85575 * 20 3 2 22 22 C 1.53005 * 109.46248 * 65.83634 * 20 3 2 23 23 H 1.09004 * 109.46801 * 293.27819 * 1 2 3 24 24 H 1.08999 * 109.46844 * 53.27514 * 1 2 3 25 25 H 1.09000 * 109.47500 * 173.27315 * 1 2 3 26 26 H 1.09002 * 109.46929 * 239.99903 * 2 1 3 27 27 H 1.08999 * 109.47186 * 120.00546 * 2 1 3 28 28 H 1.08995 * 109.46547 * 54.14641 * 4 3 2 29 29 H 1.09008 * 109.45041 * 294.16796 * 4 3 2 30 30 H 1.08994 * 109.50014 * 299.23395 * 5 4 3 31 31 H 1.09001 * 109.53146 * 179.13900 * 5 4 3 32 32 H 1.00897 * 111.00091 * 150.91694 * 8 6 5 33 33 H 1.09000 * 109.47496 * 299.99960 * 9 8 6 34 34 H 1.09006 * 109.47046 * 60.00003 * 9 8 6 35 35 H 1.09001 * 109.47473 * 299.99745 * 10 9 8 36 36 H 1.08998 * 109.47577 * 59.99772 * 10 9 8 37 37 H 0.96997 * 119.99873 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.50700 * 177.62884 * 19 6 5 39 39 H 1.09008 * 109.50576 * 297.75031 * 19 6 5 40 40 H 1.08996 * 109.47057 * 64.27052 * 22 20 3 41 41 H 1.09003 * 109.47202 * 184.27446 * 22 20 3 42 42 H 1.09002 * 109.47124 * 304.27253 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4844 1.4251 0.0982 5 6 3.9674 2.8697 -0.0508 6 6 3.3395 3.7287 1.0503 7 1 3.6680 3.3685 2.0252 8 7 3.7546 5.1274 0.8784 9 6 5.0535 5.3736 1.5189 10 6 5.4517 6.8371 1.3185 11 6 6.7845 7.0896 1.9750 12 1 7.2961 6.2866 2.4847 13 6 7.3502 8.3460 1.9260 14 7 6.7270 9.3240 1.3059 15 14 9.0019 8.6590 2.7405 16 1 10.0916 8.4020 1.7648 17 1 9.0691 10.0705 3.1970 18 1 9.1581 7.7535 3.9070 19 6 1.8143 3.6325 0.9565 20 6 1.3938 2.1644 1.0756 21 1 0.3094 2.0899 0.9944 22 6 1.8425 1.6147 2.4311 23 1 -0.3633 0.4062 0.9441 24 1 -0.3633 0.6145 -0.8237 25 1 -0.3634 -1.0206 -0.1204 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9184 0.8137 -0.6929 29 1 3.7940 1.0369 1.0686 30 1 3.6700 3.2540 -1.0263 31 1 5.0534 2.9017 0.0374 32 1 3.0517 5.7592 1.2316 33 1 4.9793 5.1596 2.5851 34 1 5.8081 4.7274 1.0703 35 1 5.5262 7.0508 0.2522 36 1 4.6973 7.4837 1.7667 37 1 7.1252 10.2078 1.2711 38 1 1.3629 4.2086 1.7641 39 1 1.4830 4.0289 -0.0034 40 1 2.9172 1.7581 2.5436 41 1 1.3200 2.1431 3.2285 42 1 1.6101 0.5512 2.4869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309037147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:25 Heat of formation + Delta-G solvation = -33.027128 kcal Electronic energy + Delta-G solvation = -17811.982347 eV Core-core repulsion = 15211.162020 eV Total energy + Delta-G solvation = -2600.820327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88099 -37.62529 -35.39871 -33.81908 -32.81709 -31.41659 -29.28446 -28.19965 -26.10723 -24.17350 -23.90516 -22.42218 -21.82894 -19.39191 -18.54079 -17.37940 -16.68970 -16.55540 -16.43061 -15.89586 -15.17745 -14.92833 -14.84271 -14.43300 -14.19278 -13.96033 -13.56501 -13.38997 -13.17516 -13.05696 -12.85684 -12.49988 -12.41463 -12.37862 -12.18647 -12.08729 -11.86482 -11.84874 -11.52414 -11.33798 -11.22427 -10.86605 -10.57110 -9.26670 -9.15526 -8.20989 -6.32828 1.39554 1.41511 1.52403 2.39889 2.97189 3.12178 3.29032 3.76380 3.87219 4.11378 4.18384 4.27394 4.32390 4.37352 4.44938 4.51956 4.53724 4.60173 4.64125 4.67741 4.76626 4.82570 4.87133 5.01158 5.05879 5.08008 5.14247 5.17755 5.21822 5.26261 5.36875 5.44392 5.50589 5.67238 5.79032 6.15217 6.20466 6.25637 6.31293 6.57328 6.84394 7.36433 8.91239 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.057345 B = 0.003963 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.159018 B = 7063.586640 C = 7151.806490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 N -0.541 5.541 4 C 0.061 3.939 5 C -0.100 4.100 6 C 0.087 3.913 7 H 0.035 0.965 8 N -0.693 5.693 9 C 0.088 3.912 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.263 1.263 19 C -0.107 4.107 20 C 0.084 3.916 21 H 0.100 0.900 22 C -0.186 4.186 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.338 0.662 33 H 0.015 0.985 34 H 0.054 0.946 35 H -0.007 1.007 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 -19.348 0.028 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 N -0.266 5.266 4 C -0.067 4.067 5 C -0.139 4.139 6 C -0.023 4.023 7 H 0.053 0.947 8 N -0.324 5.324 9 C -0.041 4.041 10 C -0.005 4.005 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.145 4.145 20 C -0.025 4.025 21 H 0.118 0.882 22 C -0.244 4.244 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.015 -19.071 -1.088 22.567 hybrid contribution 0.977 0.366 1.912 2.178 sum -11.038 -18.706 0.824 21.735 Atomic orbital electron populations 1.21849 0.94046 1.02578 1.02179 1.22136 0.96627 0.88260 1.00932 1.62222 1.05763 1.12848 1.45726 1.22015 0.88001 0.96200 1.00516 1.21506 0.99026 0.94180 0.99181 1.21635 0.95617 0.88225 0.96818 0.94746 1.60525 1.04641 1.04814 1.62460 1.21771 0.90455 0.97498 0.94405 1.18914 0.94832 0.91468 0.95287 1.21609 1.05687 0.95971 1.35166 0.92271 1.25992 1.01892 0.95903 0.95985 1.70109 1.40535 1.02311 1.44177 0.85408 0.78955 0.77510 0.78922 1.19712 1.20583 1.18714 1.21753 0.93632 0.96535 1.02604 1.21720 0.99896 0.92110 0.88754 0.88186 1.22479 1.01693 1.01774 0.98494 0.92403 0.92308 0.90914 0.90467 0.94597 0.89975 0.94528 0.91897 0.92943 0.84356 0.96730 0.92721 0.98818 0.99028 0.92695 0.91056 0.91188 0.93249 0.91527 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.15 71.98 0.66 -1.30 16 2 C 0.05 0.76 5.36 86.30 0.46 1.22 16 3 N -0.54 -11.14 4.71 -870.82 -4.10 -15.25 16 4 C 0.06 1.37 5.17 86.33 0.45 1.81 16 5 C -0.10 -2.85 5.59 30.65 0.17 -2.68 16 6 C 0.09 2.56 2.25 44.99 0.10 2.66 16 7 H 0.03 1.06 6.12 -2.39 -0.01 1.04 16 8 N -0.69 -25.70 6.31 -491.16 -3.10 -28.80 16 9 C 0.09 3.85 5.42 86.30 0.47 4.32 16 10 C 0.03 1.79 5.23 29.85 0.16 1.94 16 11 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 0.02 5.46 84.66 0.46 0.48 16 14 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 15 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 C -0.11 -2.59 4.89 30.69 0.15 -2.44 16 20 C 0.08 1.67 2.50 44.99 0.11 1.78 16 21 H 0.10 1.75 5.99 -2.39 -0.01 1.74 16 22 C -0.19 -3.46 8.25 71.98 0.59 -2.87 16 23 H 0.06 0.73 6.62 -2.38 -0.02 0.72 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 0.55 6.78 -2.39 -0.02 0.54 16 28 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 29 H 0.04 0.81 6.29 -2.38 -0.01 0.79 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.60 7.53 -2.39 -0.02 1.59 16 32 H 0.34 12.15 8.36 -89.70 -0.75 11.40 16 33 H 0.01 0.63 8.06 -2.39 -0.02 0.61 16 34 H 0.05 2.41 7.50 -2.38 -0.02 2.40 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.07 4.82 -2.39 -0.01 1.06 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.07 6.54 -2.39 -0.02 1.05 16 Total: -1.00 -64.41 315.60 -0.65 -65.06 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.23 Total: 16.36 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.02 Total: -26.77 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -6.92 Total: -101.55 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.41 -0.65 -65.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309037147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.038 kcal (2) G-P(sol) polarization free energy of solvation -64.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds