Wall clock time and date at job start Mon Mar 30 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47413 * 2 1 4 4 C 1.46854 * 111.00111 * 65.25006 * 3 2 1 5 5 C 1.53040 * 109.52239 * 174.16465 * 4 3 2 6 6 C 1.53114 * 109.28046 * 59.18238 * 5 4 3 7 7 C 1.53124 * 109.16089 * 302.34183 * 6 5 4 8 8 C 1.46846 * 110.99767 * 301.04351 * 3 2 1 9 9 H 1.09001 * 109.46364 * 65.82379 * 8 3 2 10 10 C 1.52992 * 109.46492 * 305.85289 * 8 3 2 11 11 N 1.46901 * 109.47296 * 67.47578 * 10 8 3 12 12 C 1.46896 * 111.00569 * 185.34949 * 11 10 8 13 13 H 1.09008 * 109.47068 * 34.99819 * 12 11 10 14 14 C 1.53004 * 109.47137 * 275.00649 * 12 11 10 15 15 C 1.50691 * 109.47441 * 155.00028 * 12 11 10 16 16 H 1.08006 * 120.00191 * 0.02562 * 15 12 11 17 17 C 1.37882 * 120.00073 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00146 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99938 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47178 * 89.99963 * 19 17 15 21 21 H 1.48497 * 109.46849 * 210.00339 * 19 17 15 22 22 H 1.48504 * 109.47028 * 329.99573 * 19 17 15 23 23 H 1.08999 * 109.47383 * 53.93653 * 1 2 3 24 24 H 1.09000 * 109.47497 * 173.93908 * 1 2 3 25 25 H 1.08997 * 109.47221 * 293.93901 * 1 2 3 26 26 H 1.09001 * 109.47426 * 239.99739 * 2 1 3 27 27 H 1.09003 * 109.47351 * 120.00255 * 2 1 3 28 28 H 1.08998 * 109.46106 * 294.17914 * 4 3 2 29 29 H 1.08995 * 109.45693 * 54.14967 * 4 3 2 30 30 H 1.08998 * 109.50276 * 299.23441 * 5 4 3 31 31 H 1.08999 * 109.53094 * 179.14333 * 5 4 3 32 32 H 1.09000 * 109.52166 * 182.44024 * 6 5 4 33 33 H 1.08999 * 109.52578 * 62.24460 * 6 5 4 34 34 H 1.08998 * 109.50342 * 297.71520 * 7 6 5 35 35 H 1.09001 * 109.50256 * 177.59432 * 7 6 5 36 36 H 1.09005 * 109.47399 * 187.47764 * 10 8 3 37 37 H 1.08999 * 109.47332 * 307.47931 * 10 8 3 38 38 H 1.00907 * 110.99833 * 61.39928 * 11 10 8 39 39 H 1.08998 * 109.47488 * 59.99255 * 14 12 11 40 40 H 1.09002 * 109.46688 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.46432 * 299.99351 * 14 12 11 42 42 H 0.97001 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6540 2.0725 1.2451 5 6 2.3018 3.4587 1.2730 6 6 1.8225 4.2653 0.0630 7 6 2.1726 3.5044 -1.2188 8 6 1.5286 2.1167 -1.1746 9 1 0.4454 2.2210 -1.1108 10 6 1.8923 1.3452 -2.4447 11 7 1.1329 0.0885 -2.4887 12 6 1.5488 -0.7384 -3.6294 13 1 2.6182 -0.6122 -3.7988 14 6 0.7801 -0.3063 -4.8797 15 6 1.2544 -2.1864 -3.3340 16 1 0.8030 -2.4647 -2.3930 17 6 1.5613 -3.1562 -4.2648 18 7 2.1105 -2.8174 -5.4107 19 14 1.1957 -4.9512 -3.8989 20 1 -0.1726 -5.2837 -4.3702 21 1 2.1833 -5.8103 -4.6000 22 1 1.2860 -5.1863 -2.4353 23 1 -0.3634 0.6049 -0.8307 24 1 -0.3634 -1.0219 -0.1085 25 1 -0.3633 0.4170 0.9392 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5703 2.1769 1.2974 29 1 2.0043 1.4906 2.0975 30 1 3.3861 3.3545 1.2346 31 1 2.0181 3.9751 2.1901 32 1 2.3147 5.2377 0.0553 33 1 0.7428 4.4029 0.1214 34 1 3.2549 3.4009 -1.2965 35 1 1.7960 4.0531 -2.0821 36 1 1.6475 1.9485 -3.3190 37 1 2.9598 1.1247 -2.4427 38 1 0.1400 0.2668 -2.5144 39 1 0.9930 0.7411 -5.0934 40 1 1.0891 -0.9197 -5.7262 41 1 -0.2893 -0.4325 -4.7103 42 1 2.3268 -3.4997 -6.0654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309040298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:59 Heat of formation + Delta-G solvation = 4.379206 kcal Electronic energy + Delta-G solvation = -18693.558254 eV Core-core repulsion = 16094.359987 eV Total energy + Delta-G solvation = -2599.198267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38589 -35.91487 -33.87901 -32.72741 -30.99625 -28.97041 -28.08026 -25.20033 -24.71666 -23.54063 -22.03474 -20.73240 -20.08675 -18.84494 -16.29865 -15.73193 -15.32108 -14.73910 -14.33449 -14.20509 -13.93490 -13.57259 -12.94945 -12.81912 -12.61508 -12.40414 -11.86135 -11.74366 -11.51948 -11.39062 -11.18463 -10.96426 -10.78484 -10.71861 -10.63107 -10.50663 -10.25251 -10.10739 -10.08691 -9.89606 -9.61326 -8.90567 -8.34049 -7.75190 -6.98673 -5.96430 -3.99570 3.33717 3.40494 3.44656 4.36368 4.45446 4.90979 4.98399 5.03999 5.29460 5.35574 5.49567 5.58799 5.65028 5.75649 5.80996 5.87298 5.97737 6.02282 6.04744 6.09916 6.14463 6.17690 6.24900 6.33476 6.40401 6.52962 6.61880 6.71105 6.83974 6.89583 7.11278 7.33992 7.39590 7.68649 7.75356 7.79291 7.89590 8.29760 8.52197 8.62352 9.07353 9.65793 11.10590 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.006218 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.981081 B = 4501.985050 C = 4983.781506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.037 3.963 3 N -0.524 5.524 4 C 0.051 3.949 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.089 3.911 9 H 0.036 0.964 10 C 0.062 3.938 11 N -0.673 5.673 12 C 0.207 3.793 13 H 0.034 0.966 14 C -0.168 4.168 15 C -0.492 4.492 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.895 3.105 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.025 0.975 26 H 0.147 0.853 27 H 0.044 0.956 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.323 0.677 39 H 0.004 0.996 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 11.216 9.487 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.091 4.091 3 N -0.248 5.248 4 C -0.077 4.077 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.020 4.020 9 H 0.054 0.946 10 C -0.069 4.069 11 N -0.303 5.303 12 C 0.100 3.900 13 H 0.052 0.948 14 C -0.228 4.228 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.724 3.276 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.164 0.836 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.023 0.977 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.391 10.781 9.729 14.527 hybrid contribution -1.614 -0.432 -0.581 1.768 sum -2.005 10.350 9.148 13.958 Atomic orbital electron populations 1.22246 0.99176 1.01955 0.99047 1.22836 0.92751 0.88539 1.04924 1.62192 1.59307 1.02875 1.00462 1.22073 0.97318 0.94701 0.93596 1.21581 1.01250 0.95261 0.97304 1.21550 1.00456 0.98259 0.95335 1.21616 1.01680 0.94911 0.96920 1.21621 0.96413 0.92558 0.91376 0.94621 1.21981 0.99974 0.91310 0.93591 1.61363 1.07745 1.14727 1.46446 1.19224 0.95197 0.91777 0.83828 0.94785 1.22427 0.98880 0.96925 1.04531 1.21138 1.39616 0.90426 1.01953 0.91943 1.24943 0.95462 0.98958 0.95134 1.69882 1.43378 1.33120 1.07323 0.86543 0.77762 0.84943 0.78392 1.20986 1.21454 1.19871 0.92547 0.92469 0.95593 0.83625 0.93761 0.95481 0.91516 0.91342 0.92384 0.92312 0.92700 0.91154 0.92087 0.95944 0.90720 0.85953 0.97727 0.89360 0.95531 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.36 37.15 0.31 -2.33 16 2 C 0.04 0.62 5.46 -3.83 -0.02 0.60 16 3 N -0.52 -8.14 4.69 -226.69 -1.06 -9.20 16 4 C 0.05 0.68 5.03 -3.83 -0.02 0.66 16 5 C -0.12 -1.32 6.09 -26.65 -0.16 -1.49 16 6 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 7 C -0.11 -1.45 5.37 -26.64 -0.14 -1.60 16 8 C 0.09 1.35 1.80 -67.72 -0.12 1.23 16 9 H 0.04 0.56 6.48 -51.93 -0.34 0.22 16 10 C 0.06 1.08 4.75 -3.83 -0.02 1.07 16 11 N -0.67 -13.34 1.86 -107.96 -0.20 -13.54 16 12 C 0.21 5.02 2.57 -68.87 -0.18 4.84 16 13 H 0.03 0.92 7.71 -51.92 -0.40 0.52 16 14 C -0.17 -3.99 8.94 37.16 0.33 -3.65 16 15 C -0.49 -13.17 8.84 -34.44 -0.30 -13.47 16 16 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 17 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 18 N -0.90 -25.47 11.32 55.43 0.63 -24.84 16 19 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.06 0.91 4.28 -51.93 -0.22 0.69 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.37 6.97 -51.93 -0.36 0.01 16 26 H 0.15 2.96 5.26 -51.93 -0.27 2.68 16 27 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.03 0.37 6.88 -51.93 -0.36 0.01 16 29 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.39 7.56 -51.93 -0.39 0.00 16 37 H 0.07 1.43 7.92 -51.93 -0.41 1.02 16 38 H 0.32 6.25 6.73 -39.29 -0.26 5.99 16 39 H 0.00 0.08 7.56 -51.93 -0.39 -0.31 16 40 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 41 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -26.61 308.07 -9.09 -35.70 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.49 Total: 5.14 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.58 Total: -14.20 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.64 Total: -47.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.61 -9.09 -35.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309040298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.075 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds