Wall clock time and date at job start Mon Mar 30 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47413 * 2 1 4 4 C 1.46854 * 111.00111 * 65.25006 * 3 2 1 5 5 C 1.53040 * 109.52239 * 174.16465 * 4 3 2 6 6 C 1.53114 * 109.28046 * 59.18238 * 5 4 3 7 7 C 1.53124 * 109.16089 * 302.34183 * 6 5 4 8 8 C 1.46846 * 110.99767 * 301.04351 * 3 2 1 9 9 H 1.09001 * 109.46364 * 65.82379 * 8 3 2 10 10 C 1.52992 * 109.46492 * 305.85289 * 8 3 2 11 11 N 1.46901 * 109.47296 * 67.47578 * 10 8 3 12 12 C 1.46896 * 111.00569 * 185.34949 * 11 10 8 13 13 H 1.09008 * 109.47068 * 34.99819 * 12 11 10 14 14 C 1.53004 * 109.47137 * 275.00649 * 12 11 10 15 15 C 1.50691 * 109.47441 * 155.00028 * 12 11 10 16 16 H 1.08006 * 120.00191 * 0.02562 * 15 12 11 17 17 C 1.37882 * 120.00073 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00146 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99938 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47178 * 89.99963 * 19 17 15 21 21 H 1.48497 * 109.46849 * 210.00339 * 19 17 15 22 22 H 1.48504 * 109.47028 * 329.99573 * 19 17 15 23 23 H 1.08999 * 109.47383 * 53.93653 * 1 2 3 24 24 H 1.09000 * 109.47497 * 173.93908 * 1 2 3 25 25 H 1.08997 * 109.47221 * 293.93901 * 1 2 3 26 26 H 1.09001 * 109.47426 * 239.99739 * 2 1 3 27 27 H 1.09003 * 109.47351 * 120.00255 * 2 1 3 28 28 H 1.08998 * 109.46106 * 294.17914 * 4 3 2 29 29 H 1.08995 * 109.45693 * 54.14967 * 4 3 2 30 30 H 1.08998 * 109.50276 * 299.23441 * 5 4 3 31 31 H 1.08999 * 109.53094 * 179.14333 * 5 4 3 32 32 H 1.09000 * 109.52166 * 182.44024 * 6 5 4 33 33 H 1.08999 * 109.52578 * 62.24460 * 6 5 4 34 34 H 1.08998 * 109.50342 * 297.71520 * 7 6 5 35 35 H 1.09001 * 109.50256 * 177.59432 * 7 6 5 36 36 H 1.09005 * 109.47399 * 187.47764 * 10 8 3 37 37 H 1.08999 * 109.47332 * 307.47931 * 10 8 3 38 38 H 1.00907 * 110.99833 * 61.39928 * 11 10 8 39 39 H 1.08998 * 109.47488 * 59.99255 * 14 12 11 40 40 H 1.09002 * 109.46688 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.46432 * 299.99351 * 14 12 11 42 42 H 0.97001 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6540 2.0725 1.2451 5 6 2.3018 3.4587 1.2730 6 6 1.8225 4.2653 0.0630 7 6 2.1726 3.5044 -1.2188 8 6 1.5286 2.1167 -1.1746 9 1 0.4454 2.2210 -1.1108 10 6 1.8923 1.3452 -2.4447 11 7 1.1329 0.0885 -2.4887 12 6 1.5488 -0.7384 -3.6294 13 1 2.6182 -0.6122 -3.7988 14 6 0.7801 -0.3063 -4.8797 15 6 1.2544 -2.1864 -3.3340 16 1 0.8030 -2.4647 -2.3930 17 6 1.5613 -3.1562 -4.2648 18 7 2.1105 -2.8174 -5.4107 19 14 1.1957 -4.9512 -3.8989 20 1 -0.1726 -5.2837 -4.3702 21 1 2.1833 -5.8103 -4.6000 22 1 1.2860 -5.1863 -2.4353 23 1 -0.3634 0.6049 -0.8307 24 1 -0.3634 -1.0219 -0.1085 25 1 -0.3633 0.4170 0.9392 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5703 2.1769 1.2974 29 1 2.0043 1.4906 2.0975 30 1 3.3861 3.3545 1.2346 31 1 2.0181 3.9751 2.1901 32 1 2.3147 5.2377 0.0553 33 1 0.7428 4.4029 0.1214 34 1 3.2549 3.4009 -1.2965 35 1 1.7960 4.0531 -2.0821 36 1 1.6475 1.9485 -3.3190 37 1 2.9598 1.1247 -2.4427 38 1 0.1400 0.2668 -2.5144 39 1 0.9930 0.7411 -5.0934 40 1 1.0891 -0.9197 -5.7262 41 1 -0.2893 -0.4325 -4.7103 42 1 2.3268 -3.4997 -6.0654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309040298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:59 Heat of formation + Delta-G solvation = -10.658991 kcal Electronic energy + Delta-G solvation = -18694.210359 eV Core-core repulsion = 16094.359987 eV Total energy + Delta-G solvation = -2599.850372 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61348 -37.56839 -35.13650 -34.46326 -32.49909 -30.17980 -29.72361 -27.21505 -26.10008 -24.78891 -23.28233 -22.21599 -21.63917 -20.03683 -18.28453 -17.08932 -16.78377 -16.39885 -15.84096 -15.43975 -15.03476 -14.94706 -14.50735 -14.38947 -13.90683 -13.78669 -13.42490 -13.23699 -12.96826 -12.78501 -12.72993 -12.58701 -12.40302 -12.33485 -12.12356 -12.01152 -11.90191 -11.53337 -11.31350 -11.23357 -11.07669 -10.75575 -10.44694 -8.99239 -8.61114 -8.05667 -6.15557 1.44009 1.45458 1.55681 2.46453 3.17776 3.23441 3.59413 3.93283 4.07782 4.17010 4.26508 4.45170 4.50595 4.56547 4.64357 4.69076 4.73101 4.76343 4.84341 4.87562 4.91588 4.97286 5.03016 5.07442 5.13965 5.15473 5.23616 5.28882 5.35861 5.45802 5.50868 5.60970 5.73061 5.85215 5.93631 6.31359 6.42497 6.54425 6.66951 6.86099 6.99015 7.54012 8.99952 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.006218 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.981081 B = 4501.985050 C = 4983.781506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.041 3.959 3 N -0.534 5.534 4 C 0.050 3.950 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.111 4.111 8 C 0.097 3.903 9 H 0.037 0.963 10 C 0.066 3.934 11 N -0.664 5.664 12 C 0.214 3.786 13 H -0.001 1.001 14 C -0.156 4.156 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.270 1.270 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.112 0.888 27 H 0.045 0.955 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.327 0.673 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 12.385 10.918 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.087 4.087 3 N -0.259 5.259 4 C -0.077 4.077 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.012 4.012 9 H 0.054 0.946 10 C -0.064 4.064 11 N -0.294 5.294 12 C 0.106 3.894 13 H 0.017 0.983 14 C -0.216 4.216 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.195 1.195 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.129 0.871 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.173 11.967 11.177 16.417 hybrid contribution -1.339 -0.756 -1.001 1.835 sum -2.513 11.212 10.176 15.348 Atomic orbital electron populations 1.22122 0.98285 1.01254 0.99735 1.22588 0.93396 0.89457 1.03256 1.62170 1.59605 1.02401 1.01700 1.22155 0.97626 0.95691 0.92269 1.21577 1.00735 0.94169 0.98545 1.21539 1.00982 0.98740 0.93914 1.21612 1.01023 0.93635 0.98656 1.21550 0.96569 0.93281 0.89799 0.94567 1.21973 0.98439 0.90487 0.95485 1.61313 1.08112 1.15723 1.44222 1.18954 0.93190 0.91813 0.85471 0.98280 1.22246 0.98842 0.97432 1.03041 1.21423 1.39258 0.91926 1.01655 0.92399 1.25683 0.95443 1.02849 0.95034 1.70015 1.44267 1.34174 1.08063 0.85577 0.77622 0.80269 0.78235 1.20367 1.21375 1.19451 0.92906 0.93631 0.93910 0.87067 0.93613 0.95305 0.91234 0.91870 0.90102 0.90373 0.92190 0.91866 0.91080 0.95596 0.92768 0.85413 0.95868 0.92200 0.95060 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 8.36 71.98 0.60 -4.18 16 2 C 0.04 1.37 5.46 86.30 0.47 1.84 16 3 N -0.53 -16.00 4.69 -871.11 -4.09 -20.09 16 4 C 0.05 1.22 5.03 86.33 0.43 1.66 16 5 C -0.11 -2.22 6.09 30.65 0.19 -2.03 16 6 C -0.11 -2.18 6.00 30.67 0.18 -2.00 16 7 C -0.11 -2.62 5.37 30.65 0.16 -2.46 16 8 C 0.10 2.80 1.80 44.94 0.08 2.88 16 9 H 0.04 1.07 6.48 -2.39 -0.02 1.05 16 10 C 0.07 2.33 4.75 86.30 0.41 2.74 16 11 N -0.66 -26.57 1.86 -495.46 -0.92 -27.49 16 12 C 0.21 10.62 2.57 44.17 0.11 10.73 16 13 H 0.00 -0.04 7.71 -2.38 -0.02 -0.06 16 14 C -0.16 -7.46 8.94 71.98 0.64 -6.81 16 15 C -0.50 -27.37 8.84 25.60 0.23 -27.15 16 16 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 17 C 0.01 0.42 5.30 84.66 0.45 0.87 16 18 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 19 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.05 1.65 4.28 -2.39 -0.01 1.64 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.16 6.97 -2.39 -0.02 1.14 16 26 H 0.11 4.60 5.26 -2.39 -0.01 4.59 16 27 H 0.05 1.49 8.08 -2.39 -0.02 1.48 16 28 H 0.03 0.70 6.88 -2.39 -0.02 0.68 16 29 H 0.07 1.64 8.07 -2.39 -0.02 1.62 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 0.89 7.56 -2.38 -0.02 0.87 16 37 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 38 H 0.33 12.58 6.73 -89.69 -0.60 11.98 16 39 H 0.02 0.97 7.56 -2.39 -0.02 0.96 16 40 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 41 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -57.12 308.07 1.59 -55.53 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.37 Total: 23.10 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.97 Total: -23.91 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -4.77 Total: -100.81 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -57.12 1.59 -55.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309040298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.872 kcal (2) G-P(sol) polarization free energy of solvation -57.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds