Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47207 * 2 1 4 4 C 1.46843 * 110.99996 * 68.37559 * 3 2 1 5 5 C 1.53038 * 109.52219 * 185.83896 * 4 3 2 6 6 C 1.53119 * 109.28004 * 300.82569 * 5 4 3 7 7 C 1.53115 * 109.16339 * 57.65390 * 6 5 4 8 8 C 1.46844 * 110.99936 * 192.58912 * 3 2 1 9 9 H 1.09000 * 109.46400 * 294.16436 * 8 3 2 10 10 C 1.52999 * 109.46367 * 54.14197 * 8 3 2 11 11 N 1.46901 * 109.47364 * 54.00431 * 10 8 3 12 12 C 1.46897 * 111.00663 * 184.71811 * 11 10 8 13 13 H 1.09005 * 109.46874 * 324.99734 * 12 11 10 14 14 C 1.52999 * 109.47493 * 84.99362 * 12 11 10 15 15 C 1.50700 * 109.47511 * 204.99923 * 12 11 10 16 16 H 1.08004 * 119.99779 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00060 * 179.71812 * 15 12 11 18 18 N 1.31515 * 120.00305 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99960 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47245 * 90.00279 * 19 17 15 21 21 H 1.48503 * 109.47080 * 210.00271 * 19 17 15 22 22 H 1.48502 * 109.47451 * 330.00118 * 19 17 15 23 23 H 1.08998 * 109.46695 * 60.00149 * 1 2 3 24 24 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46917 * 299.99872 * 1 2 3 26 26 H 1.09003 * 109.47213 * 239.99674 * 2 1 3 27 27 H 1.09007 * 109.47232 * 119.99666 * 2 1 3 28 28 H 1.08994 * 109.46548 * 305.85608 * 4 3 2 29 29 H 1.08998 * 109.46188 * 65.82926 * 4 3 2 30 30 H 1.09009 * 109.50275 * 60.76361 * 5 4 3 31 31 H 1.08997 * 109.50274 * 180.84125 * 5 4 3 32 32 H 1.09003 * 109.52070 * 177.55907 * 6 5 4 33 33 H 1.09001 * 109.51997 * 297.68107 * 6 5 4 34 34 H 1.08997 * 109.50567 * 182.40602 * 7 6 5 35 35 H 1.09002 * 109.50377 * 62.28147 * 7 6 5 36 36 H 1.09002 * 109.47449 * 294.00462 * 10 8 3 37 37 H 1.09000 * 109.47150 * 173.99895 * 10 8 3 38 38 H 1.00896 * 111.00223 * 60.75443 * 11 10 8 39 39 H 1.09005 * 109.46756 * 60.00300 * 14 12 11 40 40 H 1.08997 * 109.47010 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.47266 * 300.00739 * 14 12 11 42 42 H 0.96996 * 120.00490 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7188 2.0495 1.2744 5 6 2.1107 3.5263 1.1861 6 6 3.6055 3.6349 0.8728 7 6 3.9003 2.8936 -0.4341 8 6 3.4566 1.4351 -0.2988 9 1 4.0124 0.9600 0.5095 10 6 3.7308 0.6952 -1.6096 11 7 2.8737 1.2427 -2.6696 12 6 3.0283 0.4824 -3.9170 13 1 4.0624 0.1519 -4.0152 14 6 2.1038 -0.7363 -3.8895 15 6 2.6681 1.3599 -5.0881 16 1 2.3551 2.3802 -4.9222 17 6 2.7431 0.8618 -6.3715 18 7 3.1286 -0.3792 -6.5738 19 14 2.2959 1.9493 -7.8230 20 1 3.5073 2.6660 -8.2963 21 1 1.7562 1.1098 -8.9226 22 1 1.2687 2.9365 -7.4040 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 0.6522 1.9687 1.4832 29 1 2.2828 1.5715 2.0753 30 1 1.5370 4.0083 0.3944 31 1 1.9011 4.0158 2.1371 32 1 3.8800 4.6844 0.7662 33 1 4.1810 3.1884 1.6838 34 1 4.9699 2.9309 -0.6404 35 1 3.3547 3.3656 -1.2512 36 1 3.5157 -0.3655 -1.4800 37 1 4.7773 0.8225 -1.8866 38 1 3.0628 2.2226 -2.8175 39 1 1.0698 -0.4058 -3.7913 40 1 2.2190 -1.3006 -4.8149 41 1 2.3644 -1.3710 -3.0425 42 1 3.1810 -0.7297 -7.4767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309040299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = -7.331990 kcal Electronic energy + Delta-G solvation = -18546.512673 eV Core-core repulsion = 15946.806570 eV Total energy + Delta-G solvation = -2599.706103 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21816 -35.60864 -34.02125 -32.84625 -30.86108 -29.41711 -27.89507 -25.42467 -24.59003 -24.10394 -21.38739 -20.69804 -19.92277 -18.87853 -16.52975 -15.66356 -15.18662 -14.92035 -14.35725 -14.12922 -14.00188 -13.56374 -13.25312 -12.86392 -12.80040 -12.47080 -11.86755 -11.71046 -11.49475 -11.38901 -11.15865 -10.93846 -10.87700 -10.71023 -10.66086 -10.46757 -10.22655 -10.08771 -9.99254 -9.93245 -9.53873 -8.74234 -8.40740 -7.80788 -7.01580 -5.96613 -4.01980 3.32871 3.39525 3.44062 4.18808 4.45640 4.95997 5.00994 5.06430 5.28214 5.35329 5.44576 5.50038 5.56428 5.65158 5.68071 5.77936 5.84826 5.87174 5.96773 6.08443 6.10044 6.13276 6.26247 6.31652 6.33099 6.42686 6.58292 6.59180 6.69531 6.95956 7.22195 7.32864 7.52036 7.57634 7.65081 7.86292 8.00047 8.36500 8.54246 8.81864 9.11427 9.63840 11.09887 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.006320 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.825552 B = 4429.084096 C = 4824.816510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.506 5.506 4 C 0.053 3.947 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.114 4.114 8 C 0.092 3.908 9 H 0.028 0.972 10 C 0.064 3.936 11 N -0.666 5.666 12 C 0.210 3.790 13 H -0.005 1.005 14 C -0.119 4.119 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.014 0.986 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.329 0.671 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.000 1.000 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 3.710 14.742 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.231 5.231 4 C -0.075 4.075 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.016 4.016 9 H 0.046 0.954 10 C -0.067 4.067 11 N -0.298 5.298 12 C 0.102 3.898 13 H 0.013 0.987 14 C -0.178 4.178 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.032 0.968 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.148 0.852 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.459 3.469 14.412 14.895 hybrid contribution 1.125 0.302 -0.455 1.250 sum -0.334 3.771 13.956 14.461 Atomic orbital electron populations 1.21726 0.95411 1.00756 1.02058 1.22096 0.95824 0.88991 1.00534 1.61737 1.14823 1.16249 1.30266 1.22119 1.00439 0.94585 0.90371 1.21559 0.96405 0.96099 1.01217 1.21555 0.96314 1.00034 0.97678 1.21628 1.00332 0.95088 0.98113 1.21643 0.87827 0.95807 0.96358 0.95373 1.21986 0.94400 0.98496 0.91824 1.60588 1.54856 1.06344 1.07967 1.19089 0.93654 0.91835 0.85174 0.98736 1.21675 0.98866 0.97961 0.99285 1.21278 1.45013 0.98168 0.90669 0.92281 1.24913 0.95240 0.95064 0.98851 1.69903 1.47851 1.14233 1.21124 0.86559 0.78596 0.80420 0.82177 1.20883 1.21297 1.19856 0.91222 0.93106 0.93773 0.89024 0.96755 0.90981 0.96169 0.90906 0.92386 0.92228 0.92931 0.92166 0.90222 0.91902 0.96306 0.85245 0.94909 0.90489 0.98087 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.90 37.16 0.37 -1.60 16 2 C 0.05 0.81 5.44 -3.82 -0.02 0.78 16 3 N -0.51 -7.70 4.17 -226.69 -0.95 -8.65 16 4 C 0.05 0.68 5.30 -3.84 -0.02 0.66 16 5 C -0.11 -1.35 6.09 -26.65 -0.16 -1.51 16 6 C -0.12 -1.39 6.00 -26.61 -0.16 -1.55 16 7 C -0.11 -1.58 5.17 -26.65 -0.14 -1.72 16 8 C 0.09 1.41 2.21 -67.72 -0.15 1.26 16 9 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 10 C 0.06 1.16 4.40 -3.82 -0.02 1.14 16 11 N -0.67 -14.16 5.95 -107.95 -0.64 -14.80 16 12 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 13 H 0.00 -0.14 7.86 -51.93 -0.41 -0.55 16 14 C -0.12 -2.99 9.19 37.16 0.34 -2.65 16 15 C -0.51 -14.21 8.59 -34.44 -0.30 -14.50 16 16 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.81 11.34 55.43 0.63 -25.18 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.54 6.52 -51.93 -0.34 0.21 16 26 H 0.09 1.61 5.52 -51.93 -0.29 1.32 16 27 H 0.01 0.20 8.10 -51.93 -0.42 -0.22 16 28 H 0.07 0.88 6.33 -51.93 -0.33 0.56 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.24 6.79 -51.93 -0.35 0.88 16 36 H 0.06 1.18 5.62 -51.93 -0.29 0.89 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.33 7.03 6.68 -39.29 -0.26 6.77 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 2.11 6.09 -51.93 -0.32 1.79 16 41 H 0.00 0.00 7.26 -51.93 -0.38 -0.37 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -28.10 314.75 -9.33 -37.44 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.57 Total: 2.83 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.53 Total: -12.91 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.96 Total: -48.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.10 -9.33 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309040299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.105 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds