Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47207 * 2 1 4 4 C 1.46843 * 110.99996 * 68.37559 * 3 2 1 5 5 C 1.53038 * 109.52219 * 185.83896 * 4 3 2 6 6 C 1.53119 * 109.28004 * 300.82569 * 5 4 3 7 7 C 1.53115 * 109.16339 * 57.65390 * 6 5 4 8 8 C 1.46844 * 110.99936 * 192.58912 * 3 2 1 9 9 H 1.09000 * 109.46400 * 294.16436 * 8 3 2 10 10 C 1.52999 * 109.46367 * 54.14197 * 8 3 2 11 11 N 1.46901 * 109.47364 * 54.00431 * 10 8 3 12 12 C 1.46897 * 111.00663 * 184.71811 * 11 10 8 13 13 H 1.09005 * 109.46874 * 324.99734 * 12 11 10 14 14 C 1.52999 * 109.47493 * 84.99362 * 12 11 10 15 15 C 1.50700 * 109.47511 * 204.99923 * 12 11 10 16 16 H 1.08004 * 119.99779 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00060 * 179.71812 * 15 12 11 18 18 N 1.31515 * 120.00305 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99960 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47245 * 90.00279 * 19 17 15 21 21 H 1.48503 * 109.47080 * 210.00271 * 19 17 15 22 22 H 1.48502 * 109.47451 * 330.00118 * 19 17 15 23 23 H 1.08998 * 109.46695 * 60.00149 * 1 2 3 24 24 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46917 * 299.99872 * 1 2 3 26 26 H 1.09003 * 109.47213 * 239.99674 * 2 1 3 27 27 H 1.09007 * 109.47232 * 119.99666 * 2 1 3 28 28 H 1.08994 * 109.46548 * 305.85608 * 4 3 2 29 29 H 1.08998 * 109.46188 * 65.82926 * 4 3 2 30 30 H 1.09009 * 109.50275 * 60.76361 * 5 4 3 31 31 H 1.08997 * 109.50274 * 180.84125 * 5 4 3 32 32 H 1.09003 * 109.52070 * 177.55907 * 6 5 4 33 33 H 1.09001 * 109.51997 * 297.68107 * 6 5 4 34 34 H 1.08997 * 109.50567 * 182.40602 * 7 6 5 35 35 H 1.09002 * 109.50377 * 62.28147 * 7 6 5 36 36 H 1.09002 * 109.47449 * 294.00462 * 10 8 3 37 37 H 1.09000 * 109.47150 * 173.99895 * 10 8 3 38 38 H 1.00896 * 111.00223 * 60.75443 * 11 10 8 39 39 H 1.09005 * 109.46756 * 60.00300 * 14 12 11 40 40 H 1.08997 * 109.47010 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.47266 * 300.00739 * 14 12 11 42 42 H 0.96996 * 120.00490 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7188 2.0495 1.2744 5 6 2.1107 3.5263 1.1861 6 6 3.6055 3.6349 0.8728 7 6 3.9003 2.8936 -0.4341 8 6 3.4566 1.4351 -0.2988 9 1 4.0124 0.9600 0.5095 10 6 3.7308 0.6952 -1.6096 11 7 2.8737 1.2427 -2.6696 12 6 3.0283 0.4824 -3.9170 13 1 4.0624 0.1519 -4.0152 14 6 2.1038 -0.7363 -3.8895 15 6 2.6681 1.3599 -5.0881 16 1 2.3551 2.3802 -4.9222 17 6 2.7431 0.8618 -6.3715 18 7 3.1286 -0.3792 -6.5738 19 14 2.2959 1.9493 -7.8230 20 1 3.5073 2.6660 -8.2963 21 1 1.7562 1.1098 -8.9226 22 1 1.2687 2.9365 -7.4040 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 0.6522 1.9687 1.4832 29 1 2.2828 1.5715 2.0753 30 1 1.5370 4.0083 0.3944 31 1 1.9011 4.0158 2.1371 32 1 3.8800 4.6844 0.7662 33 1 4.1810 3.1884 1.6838 34 1 4.9699 2.9309 -0.6404 35 1 3.3547 3.3656 -1.2512 36 1 3.5157 -0.3655 -1.4800 37 1 4.7773 0.8225 -1.8866 38 1 3.0628 2.2226 -2.8175 39 1 1.0698 -0.4058 -3.7913 40 1 2.2190 -1.3006 -4.8149 41 1 2.3644 -1.3710 -3.0425 42 1 3.1810 -0.7297 -7.4767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309040299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = -24.992731 kcal Electronic energy + Delta-G solvation = -18547.278500 eV Core-core repulsion = 15946.806570 eV Total energy + Delta-G solvation = -2600.471930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40547 -37.39458 -35.10089 -34.68449 -32.47196 -30.51507 -29.61141 -27.41014 -26.16109 -25.23840 -22.59227 -21.93415 -21.70341 -20.14788 -18.52188 -17.05492 -16.79383 -16.38504 -15.79978 -15.42978 -15.25561 -15.02728 -14.58792 -14.33876 -14.23321 -13.85179 -13.41997 -13.32351 -12.88039 -12.66475 -12.63246 -12.55752 -12.50112 -12.21226 -12.17766 -12.00474 -11.92372 -11.70932 -11.49793 -11.05136 -10.86590 -10.81468 -10.54464 -8.96511 -8.81596 -8.10837 -6.24185 1.41934 1.43377 1.54211 2.43095 3.04565 3.17783 3.77752 3.88229 3.95006 4.04952 4.24208 4.33887 4.45496 4.48270 4.58011 4.68394 4.70536 4.72493 4.82221 4.86676 4.89661 5.00311 5.04817 5.09899 5.12225 5.18119 5.27559 5.31402 5.33868 5.37266 5.47322 5.51847 5.59248 5.70744 5.91346 6.26573 6.38183 6.47107 6.57809 6.88181 7.10223 7.46459 8.94949 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.006320 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.825552 B = 4429.084096 C = 4824.816510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.523 5.523 4 C 0.053 3.947 5 C -0.112 4.112 6 C -0.113 4.113 7 C -0.113 4.113 8 C 0.100 3.900 9 H 0.040 0.960 10 C 0.066 3.934 11 N -0.658 5.658 12 C 0.216 3.784 13 H -0.039 1.039 14 C -0.104 4.104 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.961 3.039 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.269 1.269 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.014 0.986 38 H 0.329 0.671 39 H 0.026 0.974 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 4.899 16.160 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.249 5.249 4 C -0.075 4.075 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.009 4.009 9 H 0.058 0.942 10 C -0.065 4.065 11 N -0.289 5.289 12 C 0.107 3.893 13 H -0.021 1.021 14 C -0.162 4.162 15 C -0.571 4.571 16 H 0.075 0.925 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.147 0.853 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.800 4.666 15.852 16.622 hybrid contribution 1.251 -0.101 -0.849 1.515 sum -0.550 4.566 15.003 15.692 Atomic orbital electron populations 1.21658 0.94501 1.01395 1.01691 1.22031 0.96557 0.89084 0.99725 1.61733 1.14507 1.16387 1.32229 1.22194 1.01034 0.95031 0.89223 1.21558 0.96075 0.95344 1.02021 1.21526 0.96529 1.00526 0.96430 1.21607 1.00244 0.94222 0.98989 1.21533 0.88465 0.96334 0.94569 0.94209 1.22021 0.93470 0.98479 0.92492 1.60504 1.55722 1.05916 1.06736 1.18894 0.91589 0.92121 0.86675 1.02140 1.21453 0.98318 0.97797 0.98645 1.21586 1.45266 0.98409 0.91819 0.92488 1.25718 0.95038 0.96345 1.01542 1.70032 1.48418 1.15705 1.21767 0.85517 0.78490 0.78670 0.78696 1.20128 1.20890 1.19337 0.93660 0.92040 0.91922 0.91915 0.95392 0.90320 0.95259 0.92333 0.89900 0.90920 0.91758 0.91746 0.92207 0.92704 0.96829 0.85296 0.95491 0.92965 0.96397 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.90 71.98 0.71 -2.87 16 2 C 0.05 1.58 5.44 86.30 0.47 2.04 16 3 N -0.52 -15.24 4.17 -871.10 -3.64 -18.87 16 4 C 0.05 1.21 5.30 86.33 0.46 1.67 16 5 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 6 C -0.11 -2.33 6.00 30.67 0.18 -2.14 16 7 C -0.11 -2.99 5.17 30.65 0.16 -2.83 16 8 C 0.10 2.94 2.21 44.94 0.10 3.04 16 9 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 10 C 0.07 2.41 4.40 86.30 0.38 2.79 16 11 N -0.66 -28.48 5.95 -495.45 -2.95 -31.42 16 12 C 0.22 11.30 2.60 44.17 0.11 11.41 16 13 H -0.04 -2.26 7.86 -2.38 -0.02 -2.28 16 14 C -0.10 -5.32 9.19 71.98 0.66 -4.66 16 15 C -0.53 -29.96 8.59 25.60 0.22 -29.74 16 16 H 0.06 3.16 7.62 -2.91 -0.02 3.14 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.92 -54.07 11.34 21.45 0.24 -53.83 16 19 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.41 6.52 -2.39 -0.02 1.40 16 26 H 0.06 2.20 5.52 -2.39 -0.01 2.19 16 27 H 0.03 0.74 8.10 -2.38 -0.02 0.72 16 28 H 0.08 1.71 6.33 -2.39 -0.02 1.69 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.82 6.79 -2.39 -0.02 1.81 16 36 H 0.05 2.10 5.62 -2.39 -0.01 2.08 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 38 H 0.33 14.28 6.68 -89.70 -0.60 13.69 16 39 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.05 2.93 6.09 -2.39 -0.01 2.92 16 41 H 0.02 0.81 7.26 -2.39 -0.02 0.79 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -60.23 314.75 0.15 -60.08 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.37 Total: 19.95 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.09 Total: -22.27 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -6.34 Total: -104.12 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.23 0.15 -60.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309040299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.087 kcal (2) G-P(sol) polarization free energy of solvation -60.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds