Wall clock time and date at job start Mon Mar 30 2020 03:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47072 * 2 1 4 4 C 1.46848 * 111.00133 * 70.26856 * 3 2 1 5 5 C 1.53042 * 109.57645 * 185.80468 * 4 3 2 6 6 C 1.53120 * 109.27509 * 300.92147 * 5 4 3 7 7 H 1.09001 * 109.52210 * 297.61841 * 6 5 4 8 8 N 1.46902 * 109.52293 * 177.49715 * 6 5 4 9 9 C 1.46899 * 111.00076 * 85.12171 * 8 6 5 10 10 H 1.09000 * 109.47281 * 325.00195 * 9 8 6 11 11 C 1.52997 * 109.47057 * 85.00482 * 9 8 6 12 12 C 1.50706 * 109.47170 * 205.00279 * 9 8 6 13 13 H 1.08000 * 119.99599 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00044 * 179.72899 * 12 9 8 15 15 N 1.31513 * 119.99630 * 0.26732 * 14 12 9 16 16 Si 1.86798 * 120.00033 * 180.27668 * 14 12 9 17 17 H 1.48495 * 109.47253 * 59.99551 * 16 14 12 18 18 H 1.48497 * 109.46871 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46778 * 299.99512 * 16 14 12 20 20 C 1.53117 * 109.21439 * 57.55753 * 6 5 4 21 21 C 1.46853 * 110.99797 * 194.48205 * 3 2 1 22 22 H 1.08996 * 109.46127 * 294.17323 * 21 3 2 23 23 C 1.52991 * 109.46350 * 54.14462 * 21 3 2 24 24 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47073 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47075 * 59.99773 * 1 2 3 27 27 H 1.09006 * 109.46802 * 240.00277 * 2 1 3 28 28 H 1.08999 * 109.47075 * 120.00227 * 2 1 3 29 29 H 1.08994 * 109.46257 * 305.86216 * 4 3 2 30 30 H 1.09009 * 109.45411 * 65.83542 * 4 3 2 31 31 H 1.08997 * 109.55517 * 180.95159 * 5 4 3 32 32 H 1.09002 * 109.45110 * 60.82406 * 5 4 3 33 33 H 1.00895 * 110.99917 * 209.08238 * 8 6 5 34 34 H 1.09000 * 109.47309 * 59.99730 * 11 9 8 35 35 H 1.09000 * 109.47291 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.47118 * 299.99755 * 11 9 8 37 37 H 0.97008 * 119.99653 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.50480 * 62.32097 * 20 6 5 39 39 H 1.09004 * 109.50255 * 182.43532 * 20 6 5 40 40 H 1.08999 * 109.47435 * 172.75243 * 23 21 3 41 41 H 1.08997 * 109.47600 * 292.75677 * 23 21 3 42 42 H 1.08998 * 109.47354 * 52.75590 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7587 2.0355 1.2904 5 6 2.1483 3.5132 1.2079 6 6 3.6323 3.6254 0.8478 7 1 4.2335 3.1698 1.6347 8 7 3.9979 5.0413 0.7083 9 6 4.3379 5.6281 2.0114 10 1 3.7085 5.1865 2.7841 11 6 5.8080 5.3477 2.3291 12 6 4.1086 7.1170 1.9671 13 1 3.7462 7.5808 1.0616 14 6 4.3557 7.8861 3.0844 15 7 4.7964 7.3211 4.1872 16 14 4.0642 9.7305 3.0318 17 1 2.6369 9.9974 2.7210 18 1 4.4023 10.3228 4.3509 19 1 4.9214 10.3373 1.9819 20 6 3.8860 2.8985 -0.4758 21 6 3.4466 1.4387 -0.3429 22 1 4.0272 0.9547 0.4424 23 6 3.6798 0.7133 -1.6696 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 0.6991 1.9520 1.5315 30 1 2.3475 1.5487 2.0680 31 1 1.9703 3.9918 2.1709 32 1 1.5496 4.0041 0.4406 33 1 4.7550 5.1562 0.0514 34 1 6.4373 5.7894 1.5564 35 1 6.0601 5.7827 3.2962 36 1 5.9738 4.2709 2.3612 37 1 4.9707 7.8623 4.9732 38 1 3.3155 3.3795 -1.2703 39 1 4.9488 2.9384 -0.7149 40 1 4.7112 0.8623 -1.9888 41 1 3.4900 -0.3521 -1.5395 42 1 3.0041 1.1130 -2.4258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309043142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:31 Heat of formation + Delta-G solvation = -8.172636 kcal Electronic energy + Delta-G solvation = -18208.956828 eV Core-core repulsion = 15609.214272 eV Total energy + Delta-G solvation = -2599.742556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.33588 -36.18146 -33.56950 -32.50997 -31.49415 -29.45442 -27.22284 -26.50771 -25.07250 -23.48681 -21.87390 -20.77083 -19.65681 -19.34628 -16.37556 -15.83198 -15.30175 -14.84341 -14.64891 -14.21202 -14.04056 -13.59059 -13.40524 -12.90846 -12.35095 -12.16692 -12.03202 -11.85614 -11.70259 -11.57833 -11.38759 -11.22840 -10.92820 -10.85385 -10.74538 -10.66432 -10.30073 -10.26903 -10.03053 -9.96128 -9.52129 -8.92031 -8.31312 -8.18097 -7.15809 -5.93903 -3.96742 3.37597 3.41132 3.44917 3.94958 4.47545 4.86958 4.93648 5.04248 5.22510 5.26253 5.33627 5.37609 5.46015 5.57341 5.58680 5.67417 5.75527 5.77037 5.87354 5.90353 6.01032 6.09937 6.14648 6.19893 6.27987 6.40115 6.47208 6.67586 6.73529 6.86592 6.91812 7.16040 7.28098 7.29392 7.45258 7.78349 7.95059 8.34462 8.62374 8.69956 9.10704 9.68474 11.13179 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039609 B = 0.005140 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.735330 B = 5445.750233 C = 5724.350247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.056 3.944 5 C -0.101 4.101 6 C 0.089 3.911 7 H 0.029 0.971 8 N -0.679 5.679 9 C 0.212 3.788 10 H 0.033 0.967 11 C -0.168 4.168 12 C -0.493 4.493 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C -0.110 4.110 21 C 0.085 3.915 22 H 0.035 0.965 23 C -0.146 4.146 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.324 0.676 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.003 0.997 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -14.105 -7.897 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.072 4.072 5 C -0.139 4.139 6 C -0.022 4.022 7 H 0.047 0.953 8 N -0.309 5.309 9 C 0.104 3.896 10 H 0.051 0.949 11 C -0.228 4.228 12 C -0.532 4.532 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.148 4.148 21 C -0.024 4.024 22 H 0.053 0.947 23 C -0.204 4.204 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.022 0.978 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.844 -13.561 -8.042 16.494 hybrid contribution 1.284 0.130 0.998 1.632 sum -3.560 -13.431 -7.044 15.578 Atomic orbital electron populations 1.21777 0.95115 1.00958 1.02589 1.22161 0.96032 0.89637 1.00603 1.62013 1.16439 1.15759 1.31531 1.22171 1.00508 0.95752 0.88768 1.21553 0.96510 0.93335 1.02526 1.21432 0.95579 0.90316 0.94886 0.95341 1.60815 1.44750 1.11824 1.13490 1.19183 0.90805 0.94526 0.85071 0.94912 1.22433 1.00634 0.95755 1.03929 1.21141 1.42468 0.91648 0.97919 0.92034 1.24950 0.95535 0.98598 0.95487 1.69882 1.46402 1.35421 1.02213 0.86578 0.78673 0.85375 0.76842 1.20311 1.21530 1.20409 1.21806 1.00239 0.93675 0.99109 1.21558 0.87875 0.96593 0.96396 0.94699 1.21921 1.01752 0.99426 0.97261 0.92788 0.92681 0.91916 0.90511 0.95420 0.90826 0.95518 0.91331 0.90794 0.85870 0.95413 0.89385 0.97836 0.93110 0.90462 0.92210 0.92234 0.92940 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.93 37.16 0.37 -1.08 16 2 C 0.04 0.48 5.47 -3.82 -0.02 0.46 16 3 N -0.53 -7.12 4.46 -226.68 -1.01 -8.13 16 4 C 0.06 0.82 5.30 -3.83 -0.02 0.80 16 5 C -0.10 -1.77 5.58 -26.65 -0.15 -1.92 16 6 C 0.09 1.62 2.37 -67.59 -0.16 1.46 16 7 H 0.03 0.57 7.12 -51.93 -0.37 0.20 16 8 N -0.68 -14.60 6.04 -100.82 -0.61 -15.21 16 9 C 0.21 5.39 2.39 -68.86 -0.16 5.22 16 10 H 0.03 0.92 7.15 -51.93 -0.37 0.55 16 11 C -0.17 -4.12 8.92 37.16 0.33 -3.79 16 12 C -0.49 -13.80 8.84 -34.44 -0.30 -14.11 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.05 1.53 5.31 -17.82 -0.09 1.43 16 15 N -0.90 -26.03 11.33 55.43 0.63 -25.40 16 16 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.11 -1.66 4.64 -26.65 -0.12 -1.78 16 21 C 0.08 1.12 2.44 -67.72 -0.17 0.95 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 C -0.15 -1.56 8.56 37.15 0.32 -1.24 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.56 6.59 -51.93 -0.34 0.22 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.77 5.61 -51.93 -0.29 0.47 16 28 H 0.03 0.31 8.07 -51.93 -0.42 -0.11 16 29 H 0.07 0.99 6.42 -51.93 -0.33 0.65 16 30 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.32 6.66 8.11 -39.29 -0.32 6.34 16 34 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 35 H 0.09 2.39 6.08 -51.93 -0.32 2.07 16 36 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.50 6.46 -51.93 -0.34 0.16 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -28.41 316.47 -9.07 -37.48 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.64 Total: 3.34 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.18 Total: -13.59 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.99 Total: -48.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.41 -9.07 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309043142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.310 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds