Wall clock time and date at job start Mon Mar 30 2020 03:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47072 * 2 1 4 4 C 1.46848 * 111.00133 * 70.26856 * 3 2 1 5 5 C 1.53042 * 109.57645 * 185.80468 * 4 3 2 6 6 C 1.53120 * 109.27509 * 300.92147 * 5 4 3 7 7 H 1.09001 * 109.52210 * 297.61841 * 6 5 4 8 8 N 1.46902 * 109.52293 * 177.49715 * 6 5 4 9 9 C 1.46899 * 111.00076 * 85.12171 * 8 6 5 10 10 H 1.09000 * 109.47281 * 325.00195 * 9 8 6 11 11 C 1.52997 * 109.47057 * 85.00482 * 9 8 6 12 12 C 1.50706 * 109.47170 * 205.00279 * 9 8 6 13 13 H 1.08000 * 119.99599 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00044 * 179.72899 * 12 9 8 15 15 N 1.31513 * 119.99630 * 0.26732 * 14 12 9 16 16 Si 1.86798 * 120.00033 * 180.27668 * 14 12 9 17 17 H 1.48495 * 109.47253 * 59.99551 * 16 14 12 18 18 H 1.48497 * 109.46871 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46778 * 299.99512 * 16 14 12 20 20 C 1.53117 * 109.21439 * 57.55753 * 6 5 4 21 21 C 1.46853 * 110.99797 * 194.48205 * 3 2 1 22 22 H 1.08996 * 109.46127 * 294.17323 * 21 3 2 23 23 C 1.52991 * 109.46350 * 54.14462 * 21 3 2 24 24 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47073 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47075 * 59.99773 * 1 2 3 27 27 H 1.09006 * 109.46802 * 240.00277 * 2 1 3 28 28 H 1.08999 * 109.47075 * 120.00227 * 2 1 3 29 29 H 1.08994 * 109.46257 * 305.86216 * 4 3 2 30 30 H 1.09009 * 109.45411 * 65.83542 * 4 3 2 31 31 H 1.08997 * 109.55517 * 180.95159 * 5 4 3 32 32 H 1.09002 * 109.45110 * 60.82406 * 5 4 3 33 33 H 1.00895 * 110.99917 * 209.08238 * 8 6 5 34 34 H 1.09000 * 109.47309 * 59.99730 * 11 9 8 35 35 H 1.09000 * 109.47291 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.47118 * 299.99755 * 11 9 8 37 37 H 0.97008 * 119.99653 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.50480 * 62.32097 * 20 6 5 39 39 H 1.09004 * 109.50255 * 182.43532 * 20 6 5 40 40 H 1.08999 * 109.47435 * 172.75243 * 23 21 3 41 41 H 1.08997 * 109.47600 * 292.75677 * 23 21 3 42 42 H 1.08998 * 109.47354 * 52.75590 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7587 2.0355 1.2904 5 6 2.1483 3.5132 1.2079 6 6 3.6323 3.6254 0.8478 7 1 4.2335 3.1698 1.6347 8 7 3.9979 5.0413 0.7083 9 6 4.3379 5.6281 2.0114 10 1 3.7085 5.1865 2.7841 11 6 5.8080 5.3477 2.3291 12 6 4.1086 7.1170 1.9671 13 1 3.7462 7.5808 1.0616 14 6 4.3557 7.8861 3.0844 15 7 4.7964 7.3211 4.1872 16 14 4.0642 9.7305 3.0318 17 1 2.6369 9.9974 2.7210 18 1 4.4023 10.3228 4.3509 19 1 4.9214 10.3373 1.9819 20 6 3.8860 2.8985 -0.4758 21 6 3.4466 1.4387 -0.3429 22 1 4.0272 0.9547 0.4424 23 6 3.6798 0.7133 -1.6696 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 0.6991 1.9520 1.5315 30 1 2.3475 1.5487 2.0680 31 1 1.9703 3.9918 2.1709 32 1 1.5496 4.0041 0.4406 33 1 4.7550 5.1562 0.0514 34 1 6.4373 5.7894 1.5564 35 1 6.0601 5.7827 3.2962 36 1 5.9738 4.2709 2.3612 37 1 4.9707 7.8623 4.9732 38 1 3.3155 3.3795 -1.2703 39 1 4.9488 2.9384 -0.7149 40 1 4.7112 0.8623 -1.9888 41 1 3.4900 -0.3521 -1.5395 42 1 3.0041 1.1130 -2.4258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309043142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:30 Heat of formation + Delta-G solvation = -26.637367 kcal Electronic energy + Delta-G solvation = -18209.757518 eV Core-core repulsion = 15609.214272 eV Total energy + Delta-G solvation = -2600.543247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54272 -37.81758 -35.22433 -33.73648 -33.10428 -30.83692 -28.62570 -27.78399 -27.20507 -24.71174 -23.08199 -22.24090 -21.21746 -20.65474 -18.37684 -17.03531 -16.77522 -16.37955 -16.19488 -15.55935 -15.25479 -14.92953 -14.68265 -14.47228 -14.05702 -13.63969 -13.18808 -13.03455 -12.93642 -12.85100 -12.75436 -12.70373 -12.60623 -12.49268 -12.19257 -12.10501 -11.95428 -11.87036 -11.61413 -11.39064 -11.00398 -10.92291 -10.47586 -9.24507 -8.95405 -8.08930 -6.20092 1.43341 1.45399 1.53092 2.44661 2.91632 3.19305 3.51365 3.83038 3.93649 4.05122 4.21998 4.29888 4.36353 4.47543 4.55714 4.60034 4.64976 4.67292 4.70992 4.80510 4.86255 4.87894 4.93421 5.00686 5.06808 5.08993 5.15684 5.19587 5.29731 5.34249 5.38488 5.45323 5.51325 5.68980 5.84532 6.18060 6.26228 6.29213 6.67896 6.86663 6.96669 7.50047 8.96587 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039609 B = 0.005140 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.735330 B = 5445.750233 C = 5724.350247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 N -0.538 5.538 4 C 0.066 3.934 5 C -0.096 4.096 6 C 0.089 3.911 7 H 0.012 0.988 8 N -0.682 5.682 9 C 0.219 3.781 10 H -0.001 1.001 11 C -0.155 4.155 12 C -0.514 4.514 13 H 0.054 0.946 14 C 0.008 3.992 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.101 4.101 21 C 0.084 3.916 22 H 0.029 0.971 23 C -0.139 4.139 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.021 0.979 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.331 0.669 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -15.073 -9.325 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 N -0.264 5.264 4 C -0.063 4.063 5 C -0.134 4.134 6 C -0.022 4.022 7 H 0.030 0.970 8 N -0.312 5.312 9 C 0.110 3.890 10 H 0.016 0.984 11 C -0.214 4.214 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.139 4.139 21 C -0.024 4.024 22 H 0.047 0.953 23 C -0.196 4.196 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.041 -14.548 -9.488 18.085 hybrid contribution 1.326 0.391 1.447 2.001 sum -3.715 -14.157 -8.042 16.700 Atomic orbital electron populations 1.21761 0.94226 1.02146 1.01998 1.22273 0.96753 0.88061 1.01403 1.62027 1.16621 1.17449 1.30304 1.22010 1.01098 0.93547 0.89627 1.21455 0.96031 0.95483 1.00468 1.21503 0.95530 0.88629 0.96499 0.97040 1.60704 1.44772 1.14016 1.11678 1.18911 0.90599 0.93518 0.85953 0.98356 1.22234 1.00052 0.96658 1.02466 1.21432 1.42862 0.93127 0.97867 0.92761 1.25730 0.95151 1.03036 0.95073 1.70015 1.46820 1.36946 1.02682 0.85566 0.78630 0.80024 0.77101 1.19976 1.20987 1.19549 1.21726 1.00965 0.94642 0.96553 1.21581 0.87704 0.95287 0.97877 0.95289 1.21864 1.02424 0.99980 0.95327 0.90756 0.93448 0.92297 0.88883 0.95341 0.89601 0.96028 0.94268 0.91675 0.85152 0.94793 0.92071 0.96135 0.93059 0.90783 0.91169 0.91223 0.91271 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.93 71.98 0.72 -1.77 16 2 C 0.04 0.82 5.47 86.30 0.47 1.30 16 3 N -0.54 -13.51 4.46 -871.09 -3.88 -17.40 16 4 C 0.07 1.89 5.30 86.33 0.46 2.35 16 5 C -0.10 -3.45 5.58 30.65 0.17 -3.28 16 6 C 0.09 3.28 2.37 44.99 0.11 3.38 16 7 H 0.01 0.47 7.12 -2.39 -0.02 0.45 16 8 N -0.68 -29.74 6.04 -472.89 -2.86 -32.60 16 9 C 0.22 11.43 2.39 44.17 0.11 11.53 16 10 H 0.00 -0.09 7.15 -2.39 -0.02 -0.10 16 11 C -0.15 -7.68 8.92 71.98 0.64 -7.04 16 12 C -0.51 -29.29 8.84 25.60 0.23 -29.06 16 13 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 14 C 0.01 0.45 5.31 84.66 0.45 0.90 16 15 N -0.92 -54.41 11.33 21.45 0.24 -54.17 16 16 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C -0.10 -2.91 4.64 30.65 0.14 -2.77 16 21 C 0.08 2.07 2.44 44.93 0.11 2.18 16 22 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 23 C -0.14 -2.53 8.56 71.98 0.62 -1.92 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.89 6.59 -2.39 -0.02 0.87 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.53 5.61 -2.38 -0.01 1.52 16 28 H 0.03 0.56 8.07 -2.39 -0.02 0.54 16 29 H 0.09 2.25 6.42 -2.39 -0.02 2.23 16 30 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.04 1.61 7.47 -2.39 -0.02 1.59 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.33 13.53 8.11 -89.70 -0.73 12.80 16 34 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 35 H 0.06 3.38 6.08 -2.39 -0.01 3.37 16 36 H 0.02 0.90 7.43 -2.39 -0.02 0.88 16 37 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.05 6.46 -2.39 -0.02 1.03 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -61.24 316.47 -0.02 -61.26 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.24 Total: 20.30 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.21 Total: -24.20 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -6.50 Total: -104.16 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -61.24 -0.02 -61.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309043142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.623 kcal (2) G-P(sol) polarization free energy of solvation -61.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds