Wall clock time and date at job start Mon Mar 30 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.46624 * 2 1 4 4 C 1.46845 * 111.00199 * 70.79703 * 3 2 1 5 5 C 1.53036 * 109.51662 * 185.84618 * 4 3 2 6 6 C 1.53127 * 109.27409 * 300.80100 * 5 4 3 7 7 H 1.08993 * 109.53140 * 297.76916 * 6 5 4 8 8 N 1.46897 * 109.57190 * 177.60380 * 6 5 4 9 9 C 1.46894 * 111.00307 * 91.07303 * 8 6 5 10 10 H 1.09006 * 109.47227 * 30.41936 * 9 8 6 11 11 C 1.52999 * 109.47361 * 270.41862 * 9 8 6 12 12 C 1.50698 * 109.47290 * 150.41791 * 9 8 6 13 13 H 1.08000 * 120.00044 * 3.07318 * 12 9 8 14 14 C 1.37876 * 120.00148 * 183.06807 * 12 9 8 15 15 N 1.31515 * 120.00365 * 198.37468 * 14 12 9 16 16 Si 1.86803 * 119.99912 * 18.38074 * 14 12 9 17 17 H 1.48496 * 109.47159 * 93.65673 * 16 14 12 18 18 H 1.48498 * 109.46922 * 213.66163 * 16 14 12 19 19 H 1.48505 * 109.46686 * 333.65605 * 16 14 12 20 20 C 1.53117 * 109.14882 * 57.67436 * 6 5 4 21 21 C 1.46850 * 110.99748 * 195.00378 * 3 2 1 22 22 H 1.08994 * 109.46492 * 294.17944 * 21 3 2 23 23 C 1.53007 * 109.45864 * 54.14699 * 21 3 2 24 24 H 1.09003 * 109.47550 * 299.99647 * 1 2 3 25 25 H 1.09005 * 109.47638 * 60.00260 * 1 2 3 26 26 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47054 * 240.00331 * 2 1 3 28 28 H 1.08994 * 109.47276 * 119.99512 * 2 1 3 29 29 H 1.09009 * 109.46157 * 305.85453 * 4 3 2 30 30 H 1.09003 * 109.46314 * 65.82882 * 4 3 2 31 31 H 1.08993 * 109.50518 * 60.75448 * 5 4 3 32 32 H 1.09002 * 109.50150 * 180.87722 * 5 4 3 33 33 H 1.00896 * 110.99821 * 215.03091 * 8 6 5 34 34 H 1.09003 * 109.47047 * 66.03459 * 11 9 8 35 35 H 1.08993 * 109.47612 * 186.03447 * 11 9 8 36 36 H 1.08996 * 109.47000 * 306.04093 * 11 9 8 37 37 H 0.96995 * 120.00238 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.49889 * 182.39789 * 20 6 5 39 39 H 1.08994 * 109.51066 * 62.27746 * 20 6 5 40 40 H 1.08996 * 109.47143 * 52.55798 * 23 21 3 41 41 H 1.09002 * 109.46399 * 172.55556 * 23 21 3 42 42 H 1.08997 * 109.46724 * 292.55760 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7698 2.0316 1.2946 5 6 2.1579 3.5095 1.2114 6 6 3.6393 3.6230 0.8407 7 1 4.2464 3.1643 1.6212 8 7 4.0051 5.0390 0.7029 9 6 4.4896 5.5842 1.9779 10 1 4.9712 4.7925 2.5520 11 6 3.3098 6.1459 2.7738 12 6 5.4832 6.6848 1.7085 13 1 5.6929 6.9862 0.6929 14 6 6.1244 7.3070 2.7586 15 7 6.6988 8.4762 2.5785 16 14 6.1774 6.4890 4.4372 17 1 7.4302 5.7020 4.5650 18 1 6.1360 7.5291 5.4962 19 1 5.0080 5.5856 4.5846 20 6 3.8816 2.9003 -0.4872 21 6 3.4435 1.4399 -0.3549 22 1 4.0309 0.9535 0.4238 23 6 3.6651 0.7186 -1.6860 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 0.7121 1.9474 1.5446 30 1 2.3652 1.5425 2.0657 31 1 1.5534 4.0022 0.4500 32 1 1.9871 3.9856 2.1770 33 1 4.6888 5.1663 -0.0280 34 1 2.6446 5.3314 3.0609 35 1 3.6801 6.6452 3.6690 36 1 2.7639 6.8609 2.1583 37 1 7.1502 8.9137 3.3172 38 1 4.9422 2.9409 -0.7353 39 1 3.3042 3.3835 -1.2753 40 1 2.9806 1.1181 -2.4341 41 1 4.6929 0.8716 -2.0153 42 1 3.4799 -0.3477 -1.5565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309043145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:36 Heat of formation + Delta-G solvation = -1.871053 kcal Electronic energy + Delta-G solvation = -18285.004101 eV Core-core repulsion = 15685.534802 eV Total energy + Delta-G solvation = -2599.469299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43346 -36.31316 -33.59257 -32.56392 -31.64078 -29.92529 -27.79995 -26.60905 -25.10042 -23.54743 -21.85968 -20.69237 -19.73776 -19.38598 -16.80328 -16.00755 -15.42042 -15.10370 -14.55809 -14.22461 -14.12457 -13.76955 -13.47697 -13.16946 -12.63166 -12.32324 -12.16202 -11.91850 -11.86039 -11.81707 -11.57690 -11.30816 -11.17138 -10.93448 -10.81811 -10.76236 -10.36497 -10.33295 -10.05035 -9.90282 -9.43456 -9.07622 -8.37630 -8.25825 -7.44047 -6.13141 -4.05586 3.26762 3.36564 3.40202 3.87415 4.41304 4.76769 4.85444 4.96823 5.10889 5.17040 5.20229 5.27828 5.39337 5.47774 5.49786 5.60348 5.66798 5.69836 5.80184 5.83209 5.94465 6.00659 6.04759 6.13888 6.15826 6.27383 6.32095 6.47859 6.57512 6.72372 6.79516 6.87667 7.02806 7.19376 7.21209 7.49274 7.69671 8.03396 8.40963 8.66164 8.97833 9.54709 11.00008 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.005544 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.576304 B = 5049.359032 C = 5321.705463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.055 3.945 5 C -0.106 4.106 6 C 0.086 3.914 7 H 0.033 0.967 8 N -0.675 5.675 9 C 0.188 3.812 10 H -0.004 1.004 11 C -0.130 4.130 12 C -0.530 4.530 13 H 0.076 0.924 14 C 0.079 3.921 15 N -0.888 5.888 16 Si 0.864 3.136 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.256 1.256 20 C -0.113 4.113 21 C 0.084 3.916 22 H 0.036 0.964 23 C -0.146 4.146 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.022 0.978 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -16.807 -4.445 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.257 5.257 4 C -0.073 4.073 5 C -0.144 4.144 6 C -0.024 4.024 7 H 0.051 0.949 8 N -0.306 5.306 9 C 0.079 3.921 10 H 0.013 0.987 11 C -0.188 4.188 12 C -0.568 4.568 13 H 0.094 0.906 14 C -0.124 4.124 15 N -0.525 5.525 16 Si 0.691 3.309 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.180 1.180 20 C -0.152 4.152 21 C -0.024 4.024 22 H 0.054 0.946 23 C -0.204 4.204 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.024 -16.145 -4.620 19.558 hybrid contribution 1.517 -1.145 1.764 2.593 sum -8.507 -17.290 -2.856 19.480 Atomic orbital electron populations 1.21775 0.95101 1.00994 1.02536 1.22166 0.96031 0.89578 1.00688 1.62018 1.16895 1.15969 1.30853 1.22176 1.00500 0.95723 0.88902 1.21724 0.96664 0.93563 1.02471 1.21592 0.95626 0.89938 0.95288 0.94925 1.60546 1.47840 1.12940 1.09275 1.19517 0.92125 0.93994 0.86503 0.98664 1.22122 0.98546 0.99023 0.99070 1.21103 1.22644 1.17791 0.95219 0.90616 1.24868 0.95240 0.93864 0.98457 1.70016 1.36583 1.13131 1.32754 0.87154 0.78786 0.80264 0.84702 1.20864 1.21259 1.18048 1.21866 1.00695 0.93742 0.98867 1.21569 0.87808 0.96581 0.96486 0.94630 1.21925 1.01927 0.99418 0.97114 0.92768 0.91886 0.92755 0.90424 0.95403 0.90842 0.95535 0.90727 0.91198 0.84198 0.95920 0.94129 0.92913 0.92683 0.91786 0.90371 0.91583 0.92102 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.94 37.16 0.37 -0.97 16 2 C 0.04 0.45 5.48 -3.82 -0.02 0.43 16 3 N -0.53 -6.70 4.45 -226.68 -1.01 -7.71 16 4 C 0.06 0.74 5.30 -3.84 -0.02 0.72 16 5 C -0.11 -1.68 5.48 -26.65 -0.15 -1.82 16 6 C 0.09 1.49 2.59 -67.59 -0.17 1.32 16 7 H 0.03 0.62 7.27 -51.93 -0.38 0.24 16 8 N -0.67 -13.94 6.18 -100.83 -0.62 -14.57 16 9 C 0.19 4.49 2.17 -68.87 -0.15 4.35 16 10 H 0.00 -0.10 5.91 -51.93 -0.31 -0.41 16 11 C -0.13 -2.96 8.50 37.16 0.32 -2.64 16 12 C -0.53 -14.86 9.00 -34.44 -0.31 -15.17 16 13 H 0.08 2.29 7.82 -52.49 -0.41 1.88 16 14 C 0.08 2.27 5.28 -17.82 -0.09 2.17 16 15 N -0.89 -27.03 13.96 55.43 0.77 -26.25 16 16 Si 0.86 21.43 25.79 -169.99 -4.38 17.04 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 H -0.26 -6.08 5.63 56.52 0.32 -5.76 16 20 C -0.11 -1.65 4.58 -26.65 -0.12 -1.77 16 21 C 0.08 1.07 2.44 -67.72 -0.17 0.91 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 C -0.15 -1.52 8.56 37.16 0.32 -1.20 16 24 H 0.05 0.51 6.61 -51.93 -0.34 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.74 5.59 -51.93 -0.29 0.45 16 28 H 0.03 0.29 8.07 -51.93 -0.42 -0.13 16 29 H 0.07 0.89 6.44 -51.92 -0.33 0.56 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.17 5.66 -51.93 -0.29 0.88 16 33 H 0.34 7.03 7.69 -39.29 -0.30 6.73 16 34 H 0.02 0.45 5.76 -51.93 -0.30 0.15 16 35 H 0.04 0.95 5.09 -51.93 -0.26 0.69 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 42 H 0.05 0.48 6.46 -51.93 -0.34 0.15 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -29.32 307.65 -8.23 -37.55 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.42 Total: 2.99 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.20 Total: -13.70 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.86 Total: -48.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.38 Total: 17.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.32 -8.23 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309043145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.682 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds