Wall clock time and date at job start Mon Mar 30 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.46624 * 2 1 4 4 C 1.46845 * 111.00199 * 70.79703 * 3 2 1 5 5 C 1.53036 * 109.51662 * 185.84618 * 4 3 2 6 6 C 1.53127 * 109.27409 * 300.80100 * 5 4 3 7 7 H 1.08993 * 109.53140 * 297.76916 * 6 5 4 8 8 N 1.46897 * 109.57190 * 177.60380 * 6 5 4 9 9 C 1.46894 * 111.00307 * 91.07303 * 8 6 5 10 10 H 1.09006 * 109.47227 * 30.41936 * 9 8 6 11 11 C 1.52999 * 109.47361 * 270.41862 * 9 8 6 12 12 C 1.50698 * 109.47290 * 150.41791 * 9 8 6 13 13 H 1.08000 * 120.00044 * 3.07318 * 12 9 8 14 14 C 1.37876 * 120.00148 * 183.06807 * 12 9 8 15 15 N 1.31515 * 120.00365 * 198.37468 * 14 12 9 16 16 Si 1.86803 * 119.99912 * 18.38074 * 14 12 9 17 17 H 1.48496 * 109.47159 * 93.65673 * 16 14 12 18 18 H 1.48498 * 109.46922 * 213.66163 * 16 14 12 19 19 H 1.48505 * 109.46686 * 333.65605 * 16 14 12 20 20 C 1.53117 * 109.14882 * 57.67436 * 6 5 4 21 21 C 1.46850 * 110.99748 * 195.00378 * 3 2 1 22 22 H 1.08994 * 109.46492 * 294.17944 * 21 3 2 23 23 C 1.53007 * 109.45864 * 54.14699 * 21 3 2 24 24 H 1.09003 * 109.47550 * 299.99647 * 1 2 3 25 25 H 1.09005 * 109.47638 * 60.00260 * 1 2 3 26 26 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47054 * 240.00331 * 2 1 3 28 28 H 1.08994 * 109.47276 * 119.99512 * 2 1 3 29 29 H 1.09009 * 109.46157 * 305.85453 * 4 3 2 30 30 H 1.09003 * 109.46314 * 65.82882 * 4 3 2 31 31 H 1.08993 * 109.50518 * 60.75448 * 5 4 3 32 32 H 1.09002 * 109.50150 * 180.87722 * 5 4 3 33 33 H 1.00896 * 110.99821 * 215.03091 * 8 6 5 34 34 H 1.09003 * 109.47047 * 66.03459 * 11 9 8 35 35 H 1.08993 * 109.47612 * 186.03447 * 11 9 8 36 36 H 1.08996 * 109.47000 * 306.04093 * 11 9 8 37 37 H 0.96995 * 120.00238 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.49889 * 182.39789 * 20 6 5 39 39 H 1.08994 * 109.51066 * 62.27746 * 20 6 5 40 40 H 1.08996 * 109.47143 * 52.55798 * 23 21 3 41 41 H 1.09002 * 109.46399 * 172.55556 * 23 21 3 42 42 H 1.08997 * 109.46724 * 292.55760 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7698 2.0316 1.2946 5 6 2.1579 3.5095 1.2114 6 6 3.6393 3.6230 0.8407 7 1 4.2464 3.1643 1.6212 8 7 4.0051 5.0390 0.7029 9 6 4.4896 5.5842 1.9779 10 1 4.9712 4.7925 2.5520 11 6 3.3098 6.1459 2.7738 12 6 5.4832 6.6848 1.7085 13 1 5.6929 6.9862 0.6929 14 6 6.1244 7.3070 2.7586 15 7 6.6988 8.4762 2.5785 16 14 6.1774 6.4890 4.4372 17 1 7.4302 5.7020 4.5650 18 1 6.1360 7.5291 5.4962 19 1 5.0080 5.5856 4.5846 20 6 3.8816 2.9003 -0.4872 21 6 3.4435 1.4399 -0.3549 22 1 4.0309 0.9535 0.4238 23 6 3.6651 0.7186 -1.6860 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 0.7121 1.9474 1.5446 30 1 2.3652 1.5425 2.0657 31 1 1.5534 4.0022 0.4500 32 1 1.9871 3.9856 2.1770 33 1 4.6888 5.1663 -0.0280 34 1 2.6446 5.3314 3.0609 35 1 3.6801 6.6452 3.6690 36 1 2.7639 6.8609 2.1583 37 1 7.1502 8.9137 3.3172 38 1 4.9422 2.9409 -0.7353 39 1 3.3042 3.3835 -1.2753 40 1 2.9806 1.1181 -2.4341 41 1 4.6929 0.8716 -2.0153 42 1 3.4799 -0.3477 -1.5565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309043145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:36 Heat of formation + Delta-G solvation = -22.450551 kcal Electronic energy + Delta-G solvation = -18285.896494 eV Core-core repulsion = 15685.534802 eV Total energy + Delta-G solvation = -2600.361693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55650 -37.85763 -35.18867 -33.84356 -33.20068 -31.28928 -29.07468 -27.74559 -27.11529 -24.73310 -22.86893 -22.04309 -21.35337 -20.62199 -18.85180 -17.19138 -16.84262 -16.42168 -15.94183 -15.58988 -15.26432 -15.22373 -14.78737 -14.61973 -14.36443 -13.80789 -13.25507 -13.17451 -13.03586 -12.91113 -12.78867 -12.69043 -12.57140 -12.43696 -12.29192 -11.98819 -11.88362 -11.66663 -11.61006 -11.35113 -11.19866 -10.88761 -10.51460 -9.23380 -9.13524 -8.35485 -6.32667 1.30258 1.34297 1.44798 2.32131 2.92295 2.98364 3.41340 3.81123 3.94135 4.03672 4.21274 4.29234 4.35892 4.46394 4.56804 4.59598 4.59959 4.62826 4.67730 4.78813 4.83436 4.87092 4.89848 4.97731 5.02270 5.08466 5.10833 5.17877 5.20311 5.26967 5.36368 5.41466 5.50959 5.57442 5.73550 6.03709 6.20023 6.26178 6.52042 6.69074 6.86750 7.32020 8.81322 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.005544 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.576304 B = 5049.359032 C = 5321.705463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.539 5.539 4 C 0.061 3.939 5 C -0.100 4.100 6 C 0.084 3.916 7 H 0.020 0.980 8 N -0.678 5.678 9 C 0.193 3.807 10 H -0.008 1.008 11 C -0.125 4.125 12 C -0.537 4.537 13 H 0.038 0.962 14 C 0.025 3.975 15 N -0.935 5.935 16 Si 0.928 3.072 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.237 1.237 20 C -0.107 4.107 21 C 0.086 3.914 22 H 0.030 0.970 23 C -0.140 4.140 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.335 0.665 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 -19.352 -3.910 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.265 5.265 4 C -0.067 4.067 5 C -0.138 4.138 6 C -0.026 4.026 7 H 0.038 0.962 8 N -0.308 5.308 9 C 0.084 3.916 10 H 0.010 0.990 11 C -0.183 4.183 12 C -0.575 4.575 13 H 0.056 0.944 14 C -0.174 4.174 15 N -0.574 5.574 16 Si 0.752 3.248 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.160 1.160 20 C -0.145 4.145 21 C -0.023 4.023 22 H 0.048 0.952 23 C -0.197 4.197 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.276 -18.717 -4.097 22.232 hybrid contribution 1.897 -0.333 1.490 2.435 sum -9.380 -19.050 -2.607 21.393 Atomic orbital electron populations 1.21752 0.94133 1.02089 1.02068 1.22262 0.96790 0.88140 1.01321 1.62033 1.16683 1.17563 1.30215 1.22084 1.01328 0.93852 0.89425 1.21630 0.95202 0.95485 1.01498 1.21698 0.96382 0.87910 0.96577 0.96159 1.60551 1.47167 1.15447 1.07680 1.19374 0.91620 0.92599 0.88056 0.99011 1.22034 0.98326 0.99660 0.98305 1.21378 1.23702 1.18753 0.93638 0.94388 1.25701 0.94847 0.94129 1.02726 1.70136 1.38092 1.14811 1.34332 0.86124 0.79566 0.79548 0.79581 1.20308 1.20771 1.16000 1.21796 1.00787 0.94975 0.96952 1.21549 0.87950 0.95082 0.97723 0.95165 1.21873 1.02283 1.00070 0.95513 0.93154 0.92387 0.90938 0.89251 0.95247 0.89314 0.95760 0.91496 0.92155 0.84670 0.93123 0.94900 0.93756 0.92423 0.91760 0.90808 0.91684 0.91564 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.94 71.98 0.72 -1.48 16 2 C 0.04 0.75 5.48 86.30 0.47 1.22 16 3 N -0.54 -12.31 4.45 -871.08 -3.88 -16.19 16 4 C 0.06 1.51 5.30 86.33 0.46 1.97 16 5 C -0.10 -3.02 5.48 30.65 0.17 -2.86 16 6 C 0.08 2.86 2.59 45.00 0.12 2.98 16 7 H 0.02 0.75 7.27 -2.39 -0.02 0.73 16 8 N -0.68 -28.09 6.18 -472.92 -2.92 -31.01 16 9 C 0.19 9.21 2.17 44.17 0.10 9.31 16 10 H -0.01 -0.37 5.91 -2.38 -0.01 -0.38 16 11 C -0.13 -5.58 8.50 71.98 0.61 -4.97 16 12 C -0.54 -30.81 9.00 25.60 0.23 -30.58 16 13 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 14 C 0.03 1.46 5.28 84.65 0.45 1.91 16 15 N -0.93 -58.22 13.96 21.45 0.30 -57.92 16 16 Si 0.93 44.03 25.79 68.60 1.77 45.80 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.24 -10.41 5.63 99.48 0.56 -9.85 16 20 C -0.11 -3.00 4.58 30.65 0.14 -2.86 16 21 C 0.09 2.01 2.44 44.94 0.11 2.12 16 22 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 23 C -0.14 -2.54 8.56 71.98 0.62 -1.93 16 24 H 0.05 0.81 6.61 -2.39 -0.02 0.79 16 25 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.09 1.39 5.59 -2.39 -0.01 1.37 16 28 H 0.03 0.53 8.07 -2.39 -0.02 0.51 16 29 H 0.09 1.93 6.44 -2.38 -0.02 1.91 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 1.92 5.66 -2.39 -0.01 1.91 16 33 H 0.34 14.21 7.69 -89.70 -0.69 13.52 16 34 H 0.05 1.95 5.76 -2.39 -0.01 1.94 16 35 H 0.03 1.48 5.09 -2.39 -0.01 1.47 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 42 H 0.07 1.04 6.46 -2.39 -0.02 1.02 16 Total: -1.00 -63.20 307.65 -0.40 -63.60 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.15 Total: 20.89 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.18 Total: -25.17 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -6.50 Total: -105.13 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.77 Total: 45.80 kcal Total: -63.20 -0.40 -63.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309043145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.150 kcal (2) G-P(sol) polarization free energy of solvation -63.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds