Wall clock time and date at job start Mon Mar 30 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47550 * 2 1 4 4 C 1.46843 * 111.00155 * 65.78595 * 3 2 1 5 5 C 1.53045 * 109.52191 * 185.83964 * 4 3 2 6 6 C 1.53119 * 109.28045 * 300.82144 * 5 4 3 7 7 H 1.09003 * 109.57340 * 297.72001 * 6 5 4 8 8 N 1.46896 * 109.52219 * 177.55931 * 6 5 4 9 9 C 1.46904 * 111.00107 * 85.31975 * 8 6 5 10 10 H 1.09007 * 109.46566 * 324.99944 * 9 8 6 11 11 C 1.52998 * 109.47027 * 84.99918 * 9 8 6 12 12 C 1.50701 * 109.47195 * 205.00268 * 9 8 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.53117 * 109.16013 * 57.65463 * 6 5 4 21 21 H 1.09007 * 109.50041 * 62.32096 * 20 6 5 22 22 C 1.52993 * 109.50461 * 182.40371 * 20 6 5 23 23 C 1.46845 * 111.00277 * 190.00092 * 3 2 1 24 24 H 1.08994 * 109.47571 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46577 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.46963 * 59.99663 * 1 2 3 27 27 H 1.09002 * 109.47259 * 239.99089 * 2 1 3 28 28 H 1.09000 * 109.46975 * 119.99781 * 2 1 3 29 29 H 1.08993 * 109.46492 * 305.85539 * 4 3 2 30 30 H 1.09006 * 109.46158 * 65.84162 * 4 3 2 31 31 H 1.09001 * 109.49847 * 180.88405 * 5 4 3 32 32 H 1.09002 * 109.50116 * 60.76653 * 5 4 3 33 33 H 1.00900 * 110.99885 * 321.36542 * 8 6 5 34 34 H 1.08998 * 109.47156 * 60.00002 * 11 9 8 35 35 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 36 36 H 1.09005 * 109.46870 * 300.00063 * 11 9 8 37 37 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.47317 * 60.00076 * 22 20 6 39 39 H 1.09007 * 109.47256 * 180.02562 * 22 20 6 40 40 H 1.09000 * 109.47202 * 299.99906 * 22 20 6 41 41 H 1.08999 * 109.46234 * 54.14138 * 23 3 2 42 42 H 1.08996 * 109.45160 * 294.16811 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6651 2.0685 1.2503 5 6 2.0609 3.5439 1.1565 6 6 3.5678 3.6481 0.9056 7 1 4.1089 3.2137 1.7462 8 7 3.9441 5.0602 0.7565 9 6 4.1907 5.6804 2.0652 10 1 3.5071 5.2582 2.8018 11 6 5.6340 5.4091 2.4942 12 6 3.9670 7.1675 1.9665 13 1 3.6716 7.6078 1.0257 14 6 4.1455 7.9664 3.0759 15 7 4.5055 7.4302 4.2215 16 14 3.8757 9.8107 2.9517 17 1 3.4788 10.1606 1.5642 18 1 2.8010 10.2182 3.8921 19 1 5.1332 10.5195 3.3000 20 6 3.9177 2.8873 -0.3762 21 1 3.4081 3.3472 -1.2230 22 6 5.4301 2.9357 -0.6024 23 6 3.4681 1.4310 -0.2381 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5905 1.9906 1.4146 30 1 2.1945 1.6028 2.0816 31 1 1.8119 4.0475 2.0905 32 1 1.5217 4.0137 0.3340 33 1 3.2413 5.5693 0.2418 34 1 6.3175 5.8313 1.7575 35 1 5.8168 5.8689 3.4655 36 1 5.7958 4.3335 2.5656 37 1 4.6314 7.9924 5.0018 38 1 5.9390 2.4744 0.2439 39 1 5.6785 2.3942 -1.5153 40 1 5.7502 3.9733 -0.6973 41 1 3.7028 0.8899 -1.1547 42 1 3.9886 0.9682 0.6003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309053218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:05 Heat of formation + Delta-G solvation = -13.173055 kcal Electronic energy + Delta-G solvation = -18325.640359 eV Core-core repulsion = 15725.680969 eV Total energy + Delta-G solvation = -2599.959390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25225 -36.14327 -33.92014 -32.12548 -31.28750 -29.66424 -27.57650 -25.58279 -25.14062 -23.32279 -22.24149 -20.57278 -19.65262 -19.42884 -16.50481 -15.75133 -15.19723 -14.94183 -14.51429 -14.07975 -13.91102 -13.72360 -13.20104 -12.89396 -12.46154 -12.21559 -12.05476 -11.86281 -11.59725 -11.51002 -11.24660 -11.06799 -10.94215 -10.83796 -10.67314 -10.45685 -10.34626 -10.13586 -10.07699 -9.97128 -9.54407 -8.78237 -8.45098 -8.21134 -7.14065 -6.00410 -4.06296 3.29789 3.37807 3.42173 3.98247 4.42162 4.91543 5.04605 5.07934 5.22243 5.30226 5.34222 5.42634 5.45490 5.56908 5.68569 5.72621 5.80861 5.88161 5.96275 6.01807 6.05761 6.07848 6.16807 6.31470 6.39552 6.49482 6.63244 6.81943 6.84637 6.93010 7.18918 7.21563 7.25838 7.30664 7.57300 7.81877 7.94441 8.31180 8.46496 8.74040 9.06176 9.59801 11.05896 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.005552 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.183851 B = 5042.203681 C = 5430.421307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.144 4.144 6 C 0.094 3.906 7 H 0.065 0.935 8 N -0.680 5.680 9 C 0.212 3.788 10 H 0.000 1.000 11 C -0.123 4.123 12 C -0.515 4.515 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.074 4.074 21 H 0.073 0.927 22 C -0.133 4.133 23 C 0.062 3.938 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.330 0.670 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.002 0.998 37 H 0.259 0.741 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -12.908 -7.029 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.069 4.069 5 C -0.183 4.183 6 C -0.017 4.017 7 H 0.083 0.917 8 N -0.309 5.309 9 C 0.105 3.895 10 H 0.017 0.983 11 C -0.181 4.181 12 C -0.554 4.554 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.094 4.094 21 H 0.091 0.909 22 C -0.191 4.191 23 C -0.066 4.066 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.021 0.979 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.860 -12.724 -7.325 15.181 hybrid contribution -0.646 0.613 1.148 1.453 sum -4.506 -12.111 -6.177 14.323 Atomic orbital electron populations 1.21805 0.95109 1.01140 1.02579 1.22034 0.95982 0.89414 1.00326 1.61966 1.14273 1.14703 1.35452 1.22090 1.00209 0.95148 0.89494 1.22346 0.98813 0.94827 1.02363 1.21565 0.92114 0.91847 0.96177 0.91686 1.60771 1.48208 1.00052 1.21914 1.19077 0.93098 0.93075 0.84259 0.98253 1.21713 0.98277 0.95760 1.02376 1.21321 1.46033 0.91981 0.96020 0.92235 1.24913 0.95121 0.98675 0.95319 1.69909 1.47526 1.35105 1.00456 0.86497 0.77703 0.85474 0.78049 1.19763 1.21167 1.21045 1.21104 0.96296 0.93104 0.98871 0.90893 1.21638 0.94845 1.03103 0.99520 1.22178 0.86705 0.97839 0.99890 0.92645 0.92622 0.91884 0.91115 0.95343 0.91073 0.95318 0.91299 0.91421 0.85217 0.95066 0.90287 0.97900 0.93074 0.93737 0.94231 0.90597 0.91274 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.84 37.16 0.37 -1.09 16 2 C 0.05 0.56 5.68 -3.83 -0.02 0.54 16 3 N -0.54 -7.25 4.66 -234.68 -1.09 -8.34 16 4 C 0.06 0.85 5.29 -3.83 -0.02 0.82 16 5 C -0.14 -2.40 5.34 -26.65 -0.14 -2.55 16 6 C 0.09 1.69 1.76 -67.59 -0.12 1.57 16 7 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 8 N -0.68 -14.27 5.41 -100.82 -0.55 -14.82 16 9 C 0.21 5.33 2.42 -68.86 -0.17 5.17 16 10 H 0.00 0.00 7.16 -51.93 -0.37 -0.38 16 11 C -0.12 -3.08 9.17 37.16 0.34 -2.73 16 12 C -0.51 -14.08 8.59 -34.44 -0.30 -14.38 16 13 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.54 11.31 55.43 0.63 -24.91 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.07 -1.14 2.58 -90.54 -0.23 -1.37 16 21 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 22 C -0.13 -2.00 9.06 37.15 0.34 -1.66 16 23 C 0.06 0.84 4.74 -3.83 -0.02 0.82 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.71 7.99 -51.93 -0.41 0.30 16 28 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.07 0.94 6.21 -51.93 -0.32 0.62 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.27 7.49 -51.93 -0.39 0.88 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.33 6.93 7.94 -39.29 -0.31 6.61 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 2.16 6.06 -51.93 -0.31 1.84 16 36 H 0.00 0.05 7.43 -51.93 -0.39 -0.34 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.08 1.29 7.68 -51.93 -0.40 0.89 16 41 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -27.68 318.82 -9.08 -36.77 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.79 Total: 3.43 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.07 Total: -13.26 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.01 Total: -48.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.68 -9.08 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.595 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds