Wall clock time and date at job start Mon Mar 30 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46900 * 109.47323 * 2 1 4 4 C 1.46840 * 110.99791 * 45.79251 * 3 2 1 5 5 C 1.53044 * 109.52404 * 185.83685 * 4 3 2 6 6 C 1.53119 * 109.27632 * 300.82541 * 5 4 3 7 7 H 1.09003 * 109.57550 * 297.70895 * 6 5 4 8 8 N 1.46905 * 109.52106 * 177.55741 * 6 5 4 9 9 C 1.46900 * 110.99801 * 88.15315 * 8 6 5 10 10 H 1.08995 * 109.47304 * 325.40033 * 9 8 6 11 11 C 1.53003 * 109.46618 * 205.40413 * 9 8 6 12 12 C 1.50698 * 109.47242 * 85.40759 * 9 8 6 13 13 H 1.08003 * 120.00240 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99921 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00396 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99867 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47206 * 89.99775 * 16 14 12 18 18 H 1.48492 * 109.46987 * 209.99814 * 16 14 12 19 19 H 1.48501 * 109.47081 * 330.00046 * 16 14 12 20 20 C 1.53114 * 109.16724 * 57.65002 * 6 5 4 21 21 H 1.09005 * 109.53756 * 62.30357 * 20 6 5 22 22 C 1.52994 * 109.50759 * 182.40482 * 20 6 5 23 23 C 1.46847 * 110.99829 * 170.00144 * 3 2 1 24 24 H 1.09002 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46865 * 299.99866 * 1 2 3 26 26 H 1.08995 * 109.47207 * 59.99218 * 1 2 3 27 27 H 1.09007 * 109.47539 * 120.00563 * 2 1 3 28 28 H 1.09000 * 109.47008 * 239.99820 * 2 1 3 29 29 H 1.08995 * 109.46577 * 305.85601 * 4 3 2 30 30 H 1.09006 * 109.46473 * 65.82907 * 4 3 2 31 31 H 1.08999 * 109.50412 * 180.87915 * 5 4 3 32 32 H 1.08996 * 109.53007 * 60.77736 * 5 4 3 33 33 H 1.00897 * 110.99980 * 212.10749 * 8 6 5 34 34 H 1.09001 * 109.46983 * 299.43778 * 11 9 8 35 35 H 1.08995 * 109.47612 * 59.44390 * 11 9 8 36 36 H 1.09009 * 109.46874 * 179.44400 * 11 9 8 37 37 H 0.96999 * 120.00399 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.47428 * 179.80159 * 22 20 6 39 39 H 1.08998 * 109.46983 * 299.80419 * 22 20 6 40 40 H 1.09000 * 109.47503 * 59.80210 * 22 20 6 41 41 H 1.09002 * 109.46438 * 294.17633 * 23 3 2 42 42 H 1.08999 * 109.46806 * 54.14573 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2939 2.1997 0.9827 5 6 1.7265 3.6621 0.8541 6 6 3.2356 3.7655 1.0922 7 1 3.4685 3.4402 2.1061 8 7 3.6665 5.1584 0.9125 9 6 3.5529 5.9108 2.1690 10 1 2.6878 5.5551 2.7286 11 6 3.3825 7.3993 1.8584 12 6 4.8002 5.7087 2.9902 13 1 5.5975 5.0834 2.6163 14 6 4.9236 6.3220 4.2189 15 7 3.9531 7.0838 4.6740 16 14 6.4695 6.0709 5.2371 17 1 7.4648 7.1176 4.8923 18 1 6.1323 6.1646 6.6802 19 1 7.0403 4.7308 4.9480 20 6 3.9656 2.8703 0.0872 21 1 3.7652 3.2203 -0.9255 22 6 5.4708 2.9213 0.3567 23 6 3.4680 1.4310 0.2380 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 0.2223 2.1206 0.7996 30 1 1.5179 1.8418 1.9876 31 1 1.1992 4.2640 1.5941 32 1 1.4903 4.0254 -0.1460 33 1 4.6066 5.2020 0.5487 34 1 4.2521 7.7574 1.3074 35 1 2.4857 7.5445 1.2561 36 1 3.2882 7.9565 2.7906 37 1 4.0397 7.5150 5.5386 38 1 5.9896 2.2812 -0.3567 39 1 5.8246 3.9467 0.2492 40 1 5.6705 2.5725 1.3699 41 1 3.6818 1.0767 1.2464 42 1 3.9755 0.7935 -0.4859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309053219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:07 Heat of formation + Delta-G solvation = -10.151425 kcal Electronic energy + Delta-G solvation = -18468.173158 eV Core-core repulsion = 15868.344795 eV Total energy + Delta-G solvation = -2599.828362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23934 -36.20281 -33.93198 -31.96975 -31.29445 -29.72606 -27.54615 -25.71845 -24.99830 -23.46595 -22.06973 -20.34799 -19.84814 -19.10605 -16.61622 -15.90442 -14.99797 -14.94247 -14.68642 -14.41541 -13.78868 -13.30985 -13.19560 -12.88770 -12.48130 -12.32210 -12.06790 -11.82819 -11.47629 -11.31440 -11.20119 -11.18641 -11.00105 -10.86254 -10.68759 -10.47654 -10.39417 -10.09211 -10.04736 -9.68911 -9.41592 -9.03006 -8.37774 -8.13654 -7.19297 -5.97437 -4.09570 3.26985 3.34147 3.36342 4.03805 4.40643 4.95724 5.07688 5.13641 5.20108 5.28660 5.32890 5.42499 5.49526 5.60935 5.70154 5.77712 5.81095 5.91813 5.96809 6.02831 6.07969 6.18251 6.26413 6.37596 6.43384 6.55872 6.58813 6.74577 6.95411 6.98959 7.20686 7.29272 7.30284 7.38033 7.58042 7.77881 8.13618 8.22909 8.38992 8.73957 9.04420 9.58053 11.03434 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.006189 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.176680 B = 4522.958817 C = 4726.617785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.051 3.949 5 C -0.102 4.102 6 C 0.098 3.902 7 H 0.044 0.956 8 N -0.688 5.688 9 C 0.209 3.791 10 H 0.030 0.970 11 C -0.124 4.124 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.089 4.089 21 H 0.079 0.921 22 C -0.147 4.147 23 C 0.066 3.934 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.328 0.672 34 H 0.023 0.977 35 H 0.012 0.988 36 H 0.079 0.921 37 H 0.260 0.740 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.030 0.970 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -11.453 -7.929 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.077 4.077 5 C -0.140 4.140 6 C -0.013 4.013 7 H 0.062 0.938 8 N -0.319 5.319 9 C 0.101 3.899 10 H 0.048 0.952 11 C -0.183 4.183 12 C -0.580 4.580 13 H 0.071 0.929 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.108 4.108 21 H 0.097 0.903 22 C -0.205 4.205 23 C -0.063 4.063 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.286 -10.921 -8.458 14.464 hybrid contribution 1.852 -0.819 2.080 2.903 sum -2.434 -11.740 -6.379 13.581 Atomic orbital electron populations 1.21939 0.95244 1.01477 1.02669 1.22051 0.95627 0.89757 1.00302 1.62026 1.04103 1.09768 1.50380 1.22251 0.98337 0.94378 0.92733 1.21574 0.96527 0.93494 1.02435 1.21369 0.93657 0.89606 0.96623 0.93837 1.60963 1.29423 1.09886 1.31646 1.19151 0.95796 0.90517 0.84483 0.95164 1.21680 0.96728 0.99176 1.00703 1.21865 1.03417 1.29567 1.03161 0.92875 1.24931 0.96090 0.94998 0.97563 1.69885 1.31887 1.31387 1.19372 0.86685 0.83785 0.78470 0.79576 1.20642 1.21253 1.20137 1.21308 0.94632 0.93992 1.00872 0.90251 1.21826 0.95300 1.02158 1.01240 1.22097 0.87555 0.97468 0.99142 0.92557 0.92200 0.91777 0.95346 0.91076 0.90509 0.95355 0.91685 0.91192 0.85295 0.95818 0.96868 0.90199 0.92973 0.93283 0.91735 0.92784 0.95138 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.16 37.15 0.34 -1.21 16 2 C 0.05 0.58 5.99 -3.83 -0.02 0.55 16 3 N -0.54 -7.50 4.81 -234.67 -1.13 -8.62 16 4 C 0.05 0.76 4.85 -3.83 -0.02 0.74 16 5 C -0.10 -1.77 5.62 -26.65 -0.15 -1.92 16 6 C 0.10 1.86 1.79 -67.59 -0.12 1.74 16 7 H 0.04 0.96 7.63 -51.93 -0.40 0.56 16 8 N -0.69 -14.69 6.07 -100.82 -0.61 -15.30 16 9 C 0.21 5.25 2.40 -68.86 -0.17 5.09 16 10 H 0.03 0.84 7.38 -51.93 -0.38 0.46 16 11 C -0.12 -3.11 9.29 37.16 0.35 -2.76 16 12 C -0.54 -14.62 8.30 -34.44 -0.29 -14.90 16 13 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 14 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 15 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.09 -1.41 2.50 -90.54 -0.23 -1.64 16 21 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 22 C -0.15 -2.26 9.00 37.15 0.33 -1.92 16 23 C 0.07 0.94 4.71 -3.83 -0.02 0.92 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.61 6.21 -51.92 -0.32 0.29 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.33 8.08 -51.92 -0.42 -0.09 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.02 5.81 -51.93 -0.30 0.71 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.22 7.70 -51.93 -0.40 0.82 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.33 6.91 5.99 -39.29 -0.24 6.67 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 2.16 6.08 -51.92 -0.32 1.85 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -27.71 316.91 -9.16 -36.87 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.72 Total: 4.32 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.08 Total: -13.58 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -1.11 Total: -48.62 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.71 -9.16 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.714 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds