Wall clock time and date at job start Mon Mar 30 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46900 * 109.47323 * 2 1 4 4 C 1.46840 * 110.99791 * 45.79251 * 3 2 1 5 5 C 1.53044 * 109.52404 * 185.83685 * 4 3 2 6 6 C 1.53119 * 109.27632 * 300.82541 * 5 4 3 7 7 H 1.09003 * 109.57550 * 297.70895 * 6 5 4 8 8 N 1.46905 * 109.52106 * 177.55741 * 6 5 4 9 9 C 1.46900 * 110.99801 * 88.15315 * 8 6 5 10 10 H 1.08995 * 109.47304 * 325.40033 * 9 8 6 11 11 C 1.53003 * 109.46618 * 205.40413 * 9 8 6 12 12 C 1.50698 * 109.47242 * 85.40759 * 9 8 6 13 13 H 1.08003 * 120.00240 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99921 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00396 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99867 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47206 * 89.99775 * 16 14 12 18 18 H 1.48492 * 109.46987 * 209.99814 * 16 14 12 19 19 H 1.48501 * 109.47081 * 330.00046 * 16 14 12 20 20 C 1.53114 * 109.16724 * 57.65002 * 6 5 4 21 21 H 1.09005 * 109.53756 * 62.30357 * 20 6 5 22 22 C 1.52994 * 109.50759 * 182.40482 * 20 6 5 23 23 C 1.46847 * 110.99829 * 170.00144 * 3 2 1 24 24 H 1.09002 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46865 * 299.99866 * 1 2 3 26 26 H 1.08995 * 109.47207 * 59.99218 * 1 2 3 27 27 H 1.09007 * 109.47539 * 120.00563 * 2 1 3 28 28 H 1.09000 * 109.47008 * 239.99820 * 2 1 3 29 29 H 1.08995 * 109.46577 * 305.85601 * 4 3 2 30 30 H 1.09006 * 109.46473 * 65.82907 * 4 3 2 31 31 H 1.08999 * 109.50412 * 180.87915 * 5 4 3 32 32 H 1.08996 * 109.53007 * 60.77736 * 5 4 3 33 33 H 1.00897 * 110.99980 * 212.10749 * 8 6 5 34 34 H 1.09001 * 109.46983 * 299.43778 * 11 9 8 35 35 H 1.08995 * 109.47612 * 59.44390 * 11 9 8 36 36 H 1.09009 * 109.46874 * 179.44400 * 11 9 8 37 37 H 0.96999 * 120.00399 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.47428 * 179.80159 * 22 20 6 39 39 H 1.08998 * 109.46983 * 299.80419 * 22 20 6 40 40 H 1.09000 * 109.47503 * 59.80210 * 22 20 6 41 41 H 1.09002 * 109.46438 * 294.17633 * 23 3 2 42 42 H 1.08999 * 109.46806 * 54.14573 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2939 2.1997 0.9827 5 6 1.7265 3.6621 0.8541 6 6 3.2356 3.7655 1.0922 7 1 3.4685 3.4402 2.1061 8 7 3.6665 5.1584 0.9125 9 6 3.5529 5.9108 2.1690 10 1 2.6878 5.5551 2.7286 11 6 3.3825 7.3993 1.8584 12 6 4.8002 5.7087 2.9902 13 1 5.5975 5.0834 2.6163 14 6 4.9236 6.3220 4.2189 15 7 3.9531 7.0838 4.6740 16 14 6.4695 6.0709 5.2371 17 1 7.4648 7.1176 4.8923 18 1 6.1323 6.1646 6.6802 19 1 7.0403 4.7308 4.9480 20 6 3.9656 2.8703 0.0872 21 1 3.7652 3.2203 -0.9255 22 6 5.4708 2.9213 0.3567 23 6 3.4680 1.4310 0.2380 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 0.2223 2.1206 0.7996 30 1 1.5179 1.8418 1.9876 31 1 1.1992 4.2640 1.5941 32 1 1.4903 4.0254 -0.1460 33 1 4.6066 5.2020 0.5487 34 1 4.2521 7.7574 1.3074 35 1 2.4857 7.5445 1.2561 36 1 3.2882 7.9565 2.7906 37 1 4.0397 7.5150 5.5386 38 1 5.9896 2.2812 -0.3567 39 1 5.8246 3.9467 0.2492 40 1 5.6705 2.5725 1.3699 41 1 3.6818 1.0767 1.2464 42 1 3.9755 0.7935 -0.4859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309053219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:07 Heat of formation + Delta-G solvation = -27.971167 kcal Electronic energy + Delta-G solvation = -18468.945880 eV Core-core repulsion = 15868.344795 eV Total energy + Delta-G solvation = -2600.601084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53571 -37.74524 -35.57807 -33.68379 -32.67581 -31.04083 -29.16844 -27.23713 -26.90316 -24.61720 -23.48387 -21.79408 -21.44615 -20.50366 -18.64634 -17.14449 -16.82760 -16.15916 -16.06901 -15.75402 -15.39666 -14.71171 -14.55520 -14.43677 -13.89815 -13.86050 -13.41256 -13.14417 -12.99655 -12.97736 -12.80522 -12.54537 -12.34638 -12.28619 -12.23681 -12.06929 -11.97018 -11.96531 -11.56631 -11.18425 -11.07667 -10.92720 -10.50957 -9.25131 -9.04608 -8.06989 -6.28350 1.36591 1.37706 1.46641 2.38674 2.95508 3.13873 3.59955 3.81178 3.95122 4.07299 4.26005 4.30256 4.37390 4.45473 4.58189 4.61997 4.65998 4.71452 4.81801 4.83313 4.90233 4.92198 5.01277 5.09559 5.13858 5.16861 5.19604 5.26205 5.29824 5.33937 5.36484 5.48356 5.56848 5.69139 6.06849 6.13702 6.18634 6.22714 6.41254 6.85004 7.03511 7.43301 8.91023 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.006189 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.176680 B = 4522.958817 C = 4726.617785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 N -0.542 5.542 4 C 0.059 3.941 5 C -0.097 4.097 6 C 0.099 3.901 7 H 0.007 0.993 8 N -0.682 5.682 9 C 0.215 3.785 10 H -0.004 1.004 11 C -0.114 4.114 12 C -0.552 4.552 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.914 5.914 16 Si 0.950 3.050 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.081 4.081 21 H 0.083 0.917 22 C -0.143 4.143 23 C 0.069 3.931 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.016 0.984 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.331 0.669 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.056 0.944 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.020 0.980 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -13.096 -9.127 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 N -0.267 5.267 4 C -0.069 4.069 5 C -0.135 4.135 6 C -0.012 4.012 7 H 0.025 0.975 8 N -0.312 5.312 9 C 0.106 3.894 10 H 0.014 0.986 11 C -0.173 4.173 12 C -0.591 4.591 13 H 0.070 0.930 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.776 3.224 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.100 4.100 21 H 0.101 0.899 22 C -0.201 4.201 23 C -0.059 4.059 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.751 -12.578 -9.672 16.304 hybrid contribution 1.644 -0.327 2.426 2.949 sum -2.106 -12.905 -7.246 14.949 Atomic orbital electron populations 1.21917 0.94102 1.02728 1.02274 1.22174 0.96632 0.88059 1.01031 1.62050 1.03773 1.11351 1.49540 1.22138 0.99555 0.92644 0.92545 1.21493 0.95114 0.95341 1.01592 1.21416 0.95209 0.88743 0.95804 0.97467 1.60917 1.29591 1.11258 1.29475 1.18918 0.93871 0.91042 0.85525 0.98562 1.21527 0.97406 0.98677 0.99669 1.22114 1.03875 1.29412 1.03734 0.93002 1.25688 0.98992 0.94800 0.98718 1.70013 1.33565 1.32073 1.19725 0.85679 0.80234 0.78538 0.77918 1.19913 1.20989 1.19686 1.21236 0.94667 0.94486 0.99606 0.89879 1.21784 0.95132 1.01962 1.01216 1.22073 0.88133 0.96345 0.99363 0.90573 0.92867 0.91824 0.95366 0.89477 0.88619 0.96579 0.93945 0.91036 0.84988 0.95511 0.95583 0.92528 0.92919 0.90148 0.93036 0.94334 0.96193 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.16 71.98 0.66 -1.97 16 2 C 0.05 0.97 5.99 86.30 0.52 1.49 16 3 N -0.54 -14.03 4.81 -896.36 -4.31 -18.33 16 4 C 0.06 1.72 4.85 86.33 0.42 2.14 16 5 C -0.10 -3.41 5.62 30.65 0.17 -3.24 16 6 C 0.10 3.81 1.79 44.99 0.08 3.89 16 7 H 0.01 0.33 7.63 -2.39 -0.02 0.31 16 8 N -0.68 -29.55 6.07 -472.90 -2.87 -32.41 16 9 C 0.22 11.16 2.40 44.17 0.11 11.26 16 10 H 0.00 -0.21 7.38 -2.39 -0.02 -0.23 16 11 C -0.11 -5.80 9.29 71.98 0.67 -5.13 16 12 C -0.55 -30.37 8.30 25.60 0.21 -30.16 16 13 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 14 C 0.02 0.98 5.30 84.66 0.45 1.43 16 15 N -0.91 -53.23 11.32 21.45 0.24 -52.98 16 16 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 C -0.08 -2.48 2.50 -10.74 -0.03 -2.50 16 21 H 0.08 2.53 8.14 -2.38 -0.02 2.52 16 22 C -0.14 -4.21 9.00 71.98 0.65 -3.56 16 23 C 0.07 1.84 4.71 86.33 0.41 2.25 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.98 6.21 -2.38 -0.01 0.97 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.03 0.58 8.08 -2.38 -0.02 0.56 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.41 5.81 -2.39 -0.01 2.40 16 30 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.04 1.65 7.70 -2.39 -0.02 1.63 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.33 13.98 5.99 -89.70 -0.54 13.44 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 3.13 6.08 -2.38 -0.01 3.12 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.64 6.33 -2.39 -0.02 1.62 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 2.06 8.12 -2.39 -0.02 2.04 16 Total: -1.00 -59.68 316.91 -0.17 -59.85 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.43 Total: 22.11 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.31 Total: -24.10 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -6.93 Total: -103.73 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -59.68 -0.17 -59.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.883 kcal (2) G-P(sol) polarization free energy of solvation -59.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds