Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47483 * 2 1 4 4 C 1.46846 * 111.00061 * 45.78993 * 3 2 1 5 5 C 1.53031 * 109.52624 * 185.84166 * 4 3 2 6 6 C 1.53116 * 109.27837 * 300.81900 * 5 4 3 7 7 H 1.08996 * 109.57978 * 297.71738 * 6 5 4 8 8 N 1.46905 * 109.52344 * 177.55795 * 6 5 4 9 9 C 1.46897 * 111.00068 * 101.06763 * 8 6 5 10 10 H 1.09004 * 109.46667 * 27.22711 * 9 8 6 11 11 C 1.52991 * 109.47227 * 267.22373 * 9 8 6 12 12 C 1.50699 * 109.47031 * 147.22282 * 9 8 6 13 13 H 1.07996 * 120.00451 * 4.78498 * 12 9 8 14 14 C 1.37883 * 119.99768 * 184.77945 * 12 9 8 15 15 N 1.31521 * 119.99874 * 196.35983 * 14 12 9 16 16 Si 1.86800 * 120.00055 * 16.36460 * 14 12 9 17 17 H 1.48492 * 109.47257 * 95.68016 * 16 14 12 18 18 H 1.48498 * 109.47179 * 215.68190 * 16 14 12 19 19 H 1.48505 * 109.46853 * 335.67779 * 16 14 12 20 20 C 1.53120 * 109.15906 * 57.65692 * 6 5 4 21 21 H 1.09002 * 109.53577 * 182.38639 * 20 6 5 22 22 C 1.52997 * 109.50796 * 62.28732 * 20 6 5 23 23 C 1.46851 * 111.00371 * 169.99808 * 3 2 1 24 24 H 1.08999 * 109.47058 * 299.99864 * 1 2 3 25 25 H 1.08992 * 109.47275 * 59.99595 * 1 2 3 26 26 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47428 * 239.99487 * 2 1 3 28 28 H 1.09004 * 109.47431 * 120.00006 * 2 1 3 29 29 H 1.09003 * 109.46291 * 65.82393 * 4 3 2 30 30 H 1.08998 * 109.46093 * 305.85634 * 4 3 2 31 31 H 1.09002 * 109.50697 * 180.88084 * 5 4 3 32 32 H 1.09000 * 109.50156 * 60.75895 * 5 4 3 33 33 H 1.00904 * 110.99950 * 225.01797 * 8 6 5 34 34 H 1.09011 * 109.47034 * 64.34234 * 11 9 8 35 35 H 1.08999 * 109.47400 * 184.33218 * 11 9 8 36 36 H 1.09000 * 109.47434 * 304.34298 * 11 9 8 37 37 H 0.96999 * 119.99973 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.46848 * 300.19715 * 22 20 6 39 39 H 1.09003 * 109.47309 * 60.19483 * 22 20 6 40 40 H 1.08999 * 109.47250 * 180.19881 * 22 20 6 41 41 H 1.09008 * 109.45721 * 54.14306 * 23 3 2 42 42 H 1.08992 * 109.46004 * 294.17845 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.2939 2.1998 0.9827 5 6 1.7265 3.6620 0.8540 6 6 3.2355 3.7656 1.0922 7 1 3.4684 3.4403 2.1061 8 7 3.6664 5.1585 0.9125 9 6 3.8463 5.8254 2.2089 10 1 4.0960 5.0835 2.9675 11 6 2.5503 6.5383 2.5998 12 6 4.9622 6.8328 2.1050 13 1 5.4336 7.0201 1.1516 14 6 5.3812 7.5156 3.2272 15 7 6.1096 8.6034 3.1013 16 14 4.9146 6.8954 4.9264 17 1 6.0187 6.0651 5.4708 18 1 4.6745 8.0517 5.8266 19 1 3.6793 6.0765 4.8323 20 6 3.9655 2.8704 0.0871 21 1 5.0380 2.9066 0.2785 22 6 3.6834 3.3620 -1.3340 23 6 3.4680 1.4310 0.2381 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5178 1.8419 1.9876 30 1 0.2223 2.1206 0.7995 31 1 1.1992 4.2641 1.5940 32 1 1.4903 4.0247 -0.1464 33 1 4.5096 5.2077 0.3605 34 1 1.7613 5.8014 2.7502 35 1 2.7068 7.0964 3.5229 36 1 2.2593 7.2250 1.8048 37 1 6.4047 9.0836 3.8908 38 1 2.6108 3.3269 -1.5243 39 1 4.0380 4.3872 -1.4409 40 1 4.2005 2.7223 -2.0491 41 1 3.9755 0.7935 -0.4859 42 1 3.6817 1.0767 1.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309053220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = 0.314927 kcal Electronic energy + Delta-G solvation = -18476.592737 eV Core-core repulsion = 15877.218229 eV Total energy + Delta-G solvation = -2599.374507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54125 -36.33836 -34.02450 -32.02353 -31.14724 -30.02904 -28.12249 -26.00610 -25.01086 -23.73733 -22.31164 -20.97272 -19.75728 -18.49005 -16.86377 -16.10864 -15.20627 -15.05499 -14.72625 -14.33633 -13.90267 -13.81921 -13.46545 -12.96508 -12.75919 -12.44173 -12.06600 -12.01293 -11.82512 -11.53906 -11.27178 -11.21413 -11.09943 -11.06507 -10.85498 -10.67050 -10.34613 -10.24633 -9.95196 -9.84020 -9.44337 -9.06972 -8.39684 -8.22111 -7.41207 -6.12333 -4.06160 3.26462 3.36398 3.40002 3.93251 4.41136 4.82756 4.93562 4.99779 5.07849 5.14814 5.22002 5.33983 5.38754 5.48080 5.52713 5.66657 5.75597 5.80184 5.85363 5.95463 5.96570 6.01855 6.12257 6.23307 6.30214 6.42381 6.50807 6.55377 6.62824 6.79090 6.86717 6.89922 7.02412 7.16614 7.19096 7.49666 7.68917 8.04414 8.42438 8.66767 8.97887 9.54812 11.00818 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037729 B = 0.005906 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.952572 B = 4740.182245 C = 5004.009543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.049 3.951 5 C -0.104 4.104 6 C 0.091 3.909 7 H 0.038 0.962 8 N -0.673 5.673 9 C 0.185 3.815 10 H -0.002 1.002 11 C -0.127 4.127 12 C -0.529 4.529 13 H 0.076 0.924 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.865 3.135 17 H -0.283 1.283 18 H -0.286 1.286 19 H -0.256 1.256 20 C -0.097 4.097 21 H 0.069 0.931 22 C -0.131 4.131 23 C 0.065 3.935 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.340 0.660 34 H 0.019 0.981 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -15.955 -5.022 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.258 5.258 4 C -0.079 4.079 5 C -0.142 4.142 6 C -0.020 4.020 7 H 0.056 0.944 8 N -0.305 5.305 9 C 0.076 3.924 10 H 0.016 0.984 11 C -0.185 4.185 12 C -0.567 4.567 13 H 0.094 0.906 14 C -0.125 4.125 15 N -0.527 5.527 16 Si 0.692 3.308 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.180 1.180 20 C -0.117 4.117 21 H 0.088 0.912 22 C -0.188 4.188 23 C -0.064 4.064 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.562 -15.346 -5.471 18.890 hybrid contribution 0.920 -0.983 2.240 2.614 sum -8.642 -16.328 -3.231 18.754 Atomic orbital electron populations 1.21935 0.95218 1.01530 1.02632 1.22055 0.95627 0.89692 1.00350 1.62005 1.03933 1.09749 1.50143 1.22274 0.98521 0.94428 0.92641 1.21690 0.96111 0.93454 1.02993 1.21639 0.94675 0.89504 0.96185 0.94380 1.60600 1.39103 1.11798 1.18982 1.19575 0.93755 0.93070 0.85957 0.98438 1.22043 0.97501 0.99076 0.99884 1.21153 1.17133 1.21641 0.96732 0.90622 1.24886 0.94838 0.93846 0.98965 1.70000 1.37618 1.15300 1.29821 0.87125 0.79437 0.79241 0.84961 1.20925 1.21250 1.18003 1.21493 0.99131 0.93693 0.97343 0.91228 1.21657 1.02619 1.00455 0.94071 1.22075 0.87896 0.97405 0.98977 0.92296 0.91719 0.92527 0.90976 0.95401 0.95605 0.90398 0.91635 0.90505 0.84012 0.96173 0.94229 0.92961 0.92704 0.91361 0.92250 0.94127 0.91092 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.16 37.16 0.34 -1.03 16 2 C 0.05 0.52 5.99 -3.83 -0.02 0.49 16 3 N -0.53 -6.59 4.09 -234.67 -0.96 -7.55 16 4 C 0.05 0.64 4.85 -3.84 -0.02 0.62 16 5 C -0.10 -1.60 5.35 -26.66 -0.14 -1.74 16 6 C 0.09 1.55 2.38 -67.59 -0.16 1.39 16 7 H 0.04 0.72 7.10 -51.93 -0.37 0.35 16 8 N -0.67 -13.70 5.77 -100.83 -0.58 -14.28 16 9 C 0.19 4.41 2.18 -68.87 -0.15 4.26 16 10 H 0.00 -0.05 5.70 -51.93 -0.30 -0.34 16 11 C -0.13 -2.88 8.83 37.15 0.33 -2.56 16 12 C -0.53 -14.76 8.99 -34.44 -0.31 -15.06 16 13 H 0.08 2.28 7.79 -52.49 -0.41 1.87 16 14 C 0.08 2.23 5.32 -17.81 -0.09 2.13 16 15 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 16 Si 0.87 21.44 25.79 -169.99 -4.38 17.05 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 H -0.26 -6.06 5.57 56.52 0.31 -5.74 16 20 C -0.10 -1.42 2.58 -90.54 -0.23 -1.66 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.13 -1.83 8.54 37.16 0.32 -1.52 16 23 C 0.06 0.83 4.86 -3.83 -0.02 0.81 16 24 H 0.06 0.53 6.21 -51.93 -0.32 0.21 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.91 5.81 -51.93 -0.30 0.61 16 31 H 0.07 1.07 6.65 -51.93 -0.35 0.72 16 32 H 0.08 1.22 6.58 -51.93 -0.34 0.88 16 33 H 0.34 7.02 6.54 -39.29 -0.26 6.76 16 34 H 0.02 0.40 6.65 -51.92 -0.35 0.05 16 35 H 0.04 0.92 5.13 -51.93 -0.27 0.66 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.07 0.99 6.01 -51.93 -0.31 0.68 16 39 H 0.06 0.90 6.92 -51.93 -0.36 0.54 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.82 8.12 -51.92 -0.42 0.40 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -29.02 305.17 -8.09 -37.11 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.37 Total: 3.22 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.17 Total: -13.85 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.77 Total: -48.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.38 Total: 17.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.02 -8.09 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.429 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds