Wall clock time and date at job start Mon Mar 30 2020 03:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47483 * 2 1 4 4 C 1.46846 * 111.00061 * 45.78993 * 3 2 1 5 5 C 1.53031 * 109.52624 * 185.84166 * 4 3 2 6 6 C 1.53116 * 109.27837 * 300.81900 * 5 4 3 7 7 H 1.08996 * 109.57978 * 297.71738 * 6 5 4 8 8 N 1.46905 * 109.52344 * 177.55795 * 6 5 4 9 9 C 1.46897 * 111.00068 * 101.06763 * 8 6 5 10 10 H 1.09004 * 109.46667 * 27.22711 * 9 8 6 11 11 C 1.52991 * 109.47227 * 267.22373 * 9 8 6 12 12 C 1.50699 * 109.47031 * 147.22282 * 9 8 6 13 13 H 1.07996 * 120.00451 * 4.78498 * 12 9 8 14 14 C 1.37883 * 119.99768 * 184.77945 * 12 9 8 15 15 N 1.31521 * 119.99874 * 196.35983 * 14 12 9 16 16 Si 1.86800 * 120.00055 * 16.36460 * 14 12 9 17 17 H 1.48492 * 109.47257 * 95.68016 * 16 14 12 18 18 H 1.48498 * 109.47179 * 215.68190 * 16 14 12 19 19 H 1.48505 * 109.46853 * 335.67779 * 16 14 12 20 20 C 1.53120 * 109.15906 * 57.65692 * 6 5 4 21 21 H 1.09002 * 109.53577 * 182.38639 * 20 6 5 22 22 C 1.52997 * 109.50796 * 62.28732 * 20 6 5 23 23 C 1.46851 * 111.00371 * 169.99808 * 3 2 1 24 24 H 1.08999 * 109.47058 * 299.99864 * 1 2 3 25 25 H 1.08992 * 109.47275 * 59.99595 * 1 2 3 26 26 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47428 * 239.99487 * 2 1 3 28 28 H 1.09004 * 109.47431 * 120.00006 * 2 1 3 29 29 H 1.09003 * 109.46291 * 65.82393 * 4 3 2 30 30 H 1.08998 * 109.46093 * 305.85634 * 4 3 2 31 31 H 1.09002 * 109.50697 * 180.88084 * 5 4 3 32 32 H 1.09000 * 109.50156 * 60.75895 * 5 4 3 33 33 H 1.00904 * 110.99950 * 225.01797 * 8 6 5 34 34 H 1.09011 * 109.47034 * 64.34234 * 11 9 8 35 35 H 1.08999 * 109.47400 * 184.33218 * 11 9 8 36 36 H 1.09000 * 109.47434 * 304.34298 * 11 9 8 37 37 H 0.96999 * 119.99973 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.46848 * 300.19715 * 22 20 6 39 39 H 1.09003 * 109.47309 * 60.19483 * 22 20 6 40 40 H 1.08999 * 109.47250 * 180.19881 * 22 20 6 41 41 H 1.09008 * 109.45721 * 54.14306 * 23 3 2 42 42 H 1.08992 * 109.46004 * 294.17845 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.2939 2.1998 0.9827 5 6 1.7265 3.6620 0.8540 6 6 3.2355 3.7656 1.0922 7 1 3.4684 3.4403 2.1061 8 7 3.6664 5.1585 0.9125 9 6 3.8463 5.8254 2.2089 10 1 4.0960 5.0835 2.9675 11 6 2.5503 6.5383 2.5998 12 6 4.9622 6.8328 2.1050 13 1 5.4336 7.0201 1.1516 14 6 5.3812 7.5156 3.2272 15 7 6.1096 8.6034 3.1013 16 14 4.9146 6.8954 4.9264 17 1 6.0187 6.0651 5.4708 18 1 4.6745 8.0517 5.8266 19 1 3.6793 6.0765 4.8323 20 6 3.9655 2.8704 0.0871 21 1 5.0380 2.9066 0.2785 22 6 3.6834 3.3620 -1.3340 23 6 3.4680 1.4310 0.2381 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5178 1.8419 1.9876 30 1 0.2223 2.1206 0.7995 31 1 1.1992 4.2641 1.5940 32 1 1.4903 4.0247 -0.1464 33 1 4.5096 5.2077 0.3605 34 1 1.7613 5.8014 2.7502 35 1 2.7068 7.0964 3.5229 36 1 2.2593 7.2250 1.8048 37 1 6.4047 9.0836 3.8908 38 1 2.6108 3.3269 -1.5243 39 1 4.0380 4.3872 -1.4409 40 1 4.2005 2.7223 -2.0491 41 1 3.9755 0.7935 -0.4859 42 1 3.6817 1.0767 1.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309053220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:08 Heat of formation + Delta-G solvation = -19.498458 kcal Electronic energy + Delta-G solvation = -18477.451909 eV Core-core repulsion = 15877.218229 eV Total energy + Delta-G solvation = -2600.233680 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69807 -37.77499 -35.55431 -33.89016 -32.34757 -31.24517 -29.54377 -27.36626 -26.85790 -24.84277 -23.54563 -21.99254 -21.55320 -19.83973 -18.72902 -17.32549 -16.96531 -16.02721 -15.86568 -15.68976 -15.45274 -15.18557 -14.78929 -14.47885 -14.31407 -14.04344 -13.45312 -13.07967 -12.93153 -12.89808 -12.80915 -12.67752 -12.40366 -12.27370 -12.14951 -12.09604 -11.86893 -11.64261 -11.55420 -11.31304 -11.08063 -10.94593 -10.52478 -9.18013 -9.08122 -8.34429 -6.32844 1.29949 1.34070 1.44655 2.32114 2.98603 3.00499 3.47837 3.79574 3.93310 4.13795 4.24210 4.27513 4.35593 4.47393 4.56331 4.63064 4.63542 4.65886 4.72081 4.83155 4.85542 4.91960 4.94647 5.01179 5.02316 5.12871 5.14668 5.20437 5.24100 5.35602 5.35976 5.44085 5.57061 5.68764 5.74534 6.05055 6.18271 6.23961 6.53190 6.70856 6.89099 7.32617 8.82319 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037729 B = 0.005906 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.952572 B = 4740.182245 C = 5004.009543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.098 4.098 6 C 0.089 3.911 7 H 0.023 0.977 8 N -0.673 5.673 9 C 0.191 3.809 10 H -0.006 1.006 11 C -0.122 4.122 12 C -0.534 4.534 13 H 0.038 0.962 14 C 0.023 3.977 15 N -0.937 5.937 16 Si 0.929 3.071 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.236 1.236 20 C -0.095 4.095 21 H 0.062 0.938 22 C -0.122 4.122 23 C 0.070 3.930 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.335 0.665 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 -18.316 -4.698 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.072 4.072 5 C -0.136 4.136 6 C -0.021 4.021 7 H 0.041 0.959 8 N -0.304 5.304 9 C 0.081 3.919 10 H 0.012 0.988 11 C -0.180 4.180 12 C -0.572 4.572 13 H 0.056 0.944 14 C -0.175 4.175 15 N -0.576 5.576 16 Si 0.753 3.247 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.159 1.159 20 C -0.114 4.114 21 H 0.081 0.919 22 C -0.179 4.179 23 C -0.059 4.059 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.188 -17.733 -5.160 21.593 hybrid contribution 1.452 -0.252 2.028 2.507 sum -9.736 -17.985 -3.132 20.690 Atomic orbital electron populations 1.21908 0.94126 1.02601 1.02325 1.22145 0.96541 0.88208 1.00902 1.62009 1.03480 1.11185 1.49727 1.22195 0.99555 0.92721 0.92726 1.21601 0.94372 0.95314 1.02335 1.21735 0.96284 0.87907 0.96201 0.95896 1.60615 1.38664 1.14058 1.17093 1.19440 0.92811 0.92191 0.87469 0.98844 1.21946 0.97554 0.99366 0.99158 1.21426 1.18118 1.22357 0.95273 0.94391 1.25716 0.94933 0.93752 1.03149 1.70124 1.39527 1.16860 1.31135 0.86104 0.79963 0.78975 0.79678 1.20432 1.20805 1.15948 1.21451 0.98485 0.94652 0.96844 0.91939 1.21564 1.02527 0.99754 0.94071 1.22013 0.88534 0.95937 0.99373 0.92549 0.91992 0.90866 0.89969 0.95242 0.95951 0.88658 0.92555 0.90936 0.84606 0.93491 0.94956 0.93744 0.92480 0.91565 0.93979 0.92406 0.89343 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.16 71.98 0.66 -1.54 16 2 C 0.05 0.85 5.99 86.30 0.52 1.37 16 3 N -0.54 -11.88 4.09 -896.38 -3.67 -15.54 16 4 C 0.06 1.33 4.85 86.32 0.42 1.74 16 5 C -0.10 -2.86 5.35 30.64 0.16 -2.69 16 6 C 0.09 2.97 2.38 44.99 0.11 3.08 16 7 H 0.02 0.85 7.10 -2.39 -0.02 0.83 16 8 N -0.67 -27.49 5.77 -472.92 -2.73 -30.21 16 9 C 0.19 9.04 2.18 44.17 0.10 9.13 16 10 H -0.01 -0.29 5.70 -2.38 -0.01 -0.30 16 11 C -0.12 -5.41 8.83 71.98 0.64 -4.77 16 12 C -0.53 -30.50 8.99 25.60 0.23 -30.27 16 13 H 0.04 2.39 7.79 -2.91 -0.02 2.37 16 14 C 0.02 1.36 5.32 84.66 0.45 1.81 16 15 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 16 Si 0.93 44.10 25.79 68.60 1.77 45.87 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 19 H -0.24 -10.39 5.57 99.48 0.55 -9.84 16 20 C -0.09 -2.67 2.58 -10.74 -0.03 -2.70 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 C -0.12 -3.27 8.54 71.98 0.61 -2.66 16 23 C 0.07 1.63 4.86 86.32 0.42 2.05 16 24 H 0.06 0.84 6.21 -2.39 -0.01 0.83 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.03 0.51 8.08 -2.38 -0.02 0.49 16 29 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 1.94 5.81 -2.39 -0.01 1.93 16 31 H 0.06 1.73 6.65 -2.39 -0.02 1.72 16 32 H 0.07 2.19 6.58 -2.39 -0.02 2.17 16 33 H 0.34 14.19 6.54 -89.69 -0.59 13.60 16 34 H 0.05 1.80 6.65 -2.38 -0.02 1.79 16 35 H 0.03 1.45 5.13 -2.39 -0.01 1.44 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.07 1.81 6.01 -2.39 -0.01 1.79 16 39 H 0.04 1.26 6.92 -2.39 -0.02 1.24 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.78 8.12 -2.38 -0.02 1.76 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -62.55 305.17 0.20 -62.34 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.24 Total: 21.08 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 4.29 Total: -25.44 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -6.10 Total: -103.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.77 Total: 45.87 kcal Total: -62.55 0.20 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.846 kcal (2) G-P(sol) polarization free energy of solvation -62.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds