Wall clock time and date at job start Mon Mar 30 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47206 * 2 1 4 4 C 1.46845 * 110.99753 * 45.78709 * 3 2 1 5 5 C 1.53042 * 109.52127 * 185.84058 * 4 3 2 6 6 C 1.53115 * 109.27626 * 300.82213 * 5 4 3 7 7 H 1.08997 * 109.58152 * 297.71261 * 6 5 4 8 8 N 1.46908 * 109.52210 * 177.55998 * 6 5 4 9 9 C 1.46904 * 111.00046 * 85.31829 * 8 6 5 10 10 H 1.09001 * 109.47014 * 325.00036 * 9 8 6 11 11 C 1.52999 * 109.47141 * 85.00248 * 9 8 6 12 12 C 1.50697 * 109.46891 * 205.00335 * 9 8 6 13 13 H 1.07991 * 120.00449 * 359.72239 * 12 9 8 14 14 C 1.37885 * 119.99686 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 C 1.53115 * 109.16208 * 57.66017 * 6 5 4 21 21 H 1.09005 * 109.50719 * 182.40459 * 20 6 5 22 22 C 1.52996 * 109.50757 * 62.28262 * 20 6 5 23 23 C 1.46840 * 111.00290 * 170.00348 * 3 2 1 24 24 H 1.09002 * 109.47074 * 299.99944 * 1 2 3 25 25 H 1.08998 * 109.47249 * 60.00344 * 1 2 3 26 26 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47074 * 240.00056 * 2 1 3 28 28 H 1.08995 * 109.47371 * 120.00180 * 2 1 3 29 29 H 1.08992 * 109.47105 * 305.85650 * 4 3 2 30 30 H 1.08999 * 109.46026 * 65.83875 * 4 3 2 31 31 H 1.09004 * 109.50159 * 180.88672 * 5 4 3 32 32 H 1.08999 * 109.50448 * 60.76761 * 5 4 3 33 33 H 1.00903 * 110.99384 * 321.36631 * 8 6 5 34 34 H 1.08993 * 109.47037 * 59.99983 * 11 9 8 35 35 H 1.08997 * 109.47084 * 180.02562 * 11 9 8 36 36 H 1.09007 * 109.46899 * 300.00332 * 11 9 8 37 37 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47105 * 60.00090 * 22 20 6 39 39 H 1.08996 * 109.47618 * 180.02562 * 22 20 6 40 40 H 1.09010 * 109.47014 * 300.00556 * 22 20 6 41 41 H 1.09001 * 109.46371 * 54.13925 * 23 3 2 42 42 H 1.09004 * 109.45746 * 294.17473 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1997 0.9826 5 6 1.7265 3.6621 0.8539 6 6 3.2354 3.7656 1.0922 7 1 3.4683 3.4404 2.1061 8 7 3.6664 5.1585 0.9124 9 6 3.4894 5.9284 2.1510 10 1 2.5970 5.5800 2.6710 11 6 4.7119 5.7353 3.0505 12 6 3.3376 7.3899 1.8167 13 1 3.3738 7.7150 0.7875 14 6 3.1587 8.3129 2.8253 15 7 3.1150 7.9170 4.0787 16 14 2.9781 10.1254 2.4114 17 1 3.0626 10.3080 0.9402 18 1 1.6631 10.6154 2.8968 19 1 4.0659 10.8938 3.0684 20 6 3.9655 2.8705 0.0871 21 1 5.0379 2.9069 0.2792 22 6 3.6834 3.3621 -1.3340 23 6 3.4680 1.4311 0.2380 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.2223 2.1206 0.7996 30 1 1.5180 1.8420 1.9875 31 1 1.1991 4.2641 1.5940 32 1 1.4902 4.0248 -0.1464 33 1 3.1767 5.5921 0.1441 34 1 5.6042 6.0836 2.5306 35 1 4.5805 6.3061 3.9697 36 1 4.8218 4.6780 3.2923 37 1 2.9888 8.5663 4.7882 38 1 4.0347 4.3885 -1.4398 39 1 4.2029 2.7243 -2.0490 40 1 2.6109 3.3237 -1.5256 41 1 3.9755 0.7936 -0.4860 42 1 3.6817 1.0768 1.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309053221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:11 Heat of formation + Delta-G solvation = -6.679094 kcal Electronic energy + Delta-G solvation = -18428.308635 eV Core-core repulsion = 15828.630844 eV Total energy + Delta-G solvation = -2599.677791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45133 -36.17611 -33.95737 -31.99485 -30.92689 -29.69845 -27.51564 -25.89656 -25.07761 -23.57098 -22.49903 -20.83791 -19.65497 -18.36960 -16.65342 -15.92539 -15.15048 -14.81156 -14.59069 -14.08572 -13.97962 -13.79233 -13.50671 -12.76415 -12.49074 -12.20077 -11.99664 -11.95231 -11.48279 -11.41697 -11.16338 -11.04709 -11.00536 -10.89580 -10.66584 -10.43284 -10.29233 -10.14637 -10.07575 -9.84791 -9.54033 -8.77626 -8.44800 -8.14923 -7.14164 -6.00282 -4.06013 3.29968 3.37928 3.42346 4.01310 4.42407 4.93966 5.03276 5.07647 5.19915 5.29906 5.34764 5.40141 5.48652 5.55832 5.63974 5.75571 5.86018 5.89079 5.94967 5.95828 6.05565 6.09346 6.18353 6.35209 6.39100 6.56423 6.68247 6.70902 6.89235 6.95398 7.18784 7.21942 7.27746 7.30152 7.57507 7.82157 7.94685 8.31259 8.47069 8.74702 9.06517 9.59984 11.06155 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037476 B = 0.005465 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.958234 B = 5122.554474 C = 5272.842880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.534 5.534 4 C 0.055 3.945 5 C -0.145 4.145 6 C 0.094 3.906 7 H 0.064 0.936 8 N -0.681 5.681 9 C 0.211 3.789 10 H 0.001 0.999 11 C -0.124 4.124 12 C -0.515 4.515 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.075 4.075 21 H 0.073 0.927 22 C -0.133 4.133 23 C 0.061 3.939 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.331 0.669 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.002 0.998 37 H 0.259 0.741 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -13.627 -6.927 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.259 5.259 4 C -0.073 4.073 5 C -0.185 4.185 6 C -0.017 4.017 7 H 0.082 0.918 8 N -0.311 5.311 9 C 0.104 3.896 10 H 0.018 0.982 11 C -0.182 4.182 12 C -0.553 4.553 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.095 4.095 21 H 0.091 0.909 22 C -0.190 4.190 23 C -0.067 4.067 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.021 0.979 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.347 -13.465 -7.069 15.388 hybrid contribution -0.891 0.704 0.819 1.400 sum -3.238 -12.761 -6.250 14.574 Atomic orbital electron populations 1.21940 0.95295 1.01484 1.02625 1.22051 0.95570 0.89780 1.00309 1.62006 1.04137 1.09655 1.50137 1.22162 0.98357 0.94041 0.92751 1.22372 0.98759 0.94877 1.02445 1.21523 0.91039 0.91512 0.97650 0.91788 1.60797 1.60956 1.00319 1.09011 1.19091 0.93122 0.91669 0.85751 0.98182 1.21717 0.98442 0.96341 1.01701 1.21317 1.49150 0.91641 0.93239 0.92249 1.24920 0.95197 0.98945 0.94980 1.69915 1.50183 1.33924 0.98969 0.86492 0.77521 0.85171 0.78524 1.19753 1.21162 1.21040 1.21145 0.99609 0.92269 0.96465 0.90853 1.21663 1.01845 1.00686 0.94844 1.22149 0.87661 0.98008 0.98879 0.92263 0.91807 0.92553 0.91035 0.95377 0.90662 0.95409 0.91462 0.91109 0.85076 0.95051 0.90283 0.97907 0.93075 0.92282 0.94260 0.92043 0.91251 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.16 37.16 0.34 -1.15 16 2 C 0.05 0.55 5.99 -3.82 -0.02 0.53 16 3 N -0.53 -7.00 4.09 -234.67 -0.96 -7.96 16 4 C 0.06 0.78 4.85 -3.83 -0.02 0.76 16 5 C -0.15 -2.40 4.98 -26.65 -0.13 -2.54 16 6 C 0.09 1.69 2.04 -67.59 -0.14 1.56 16 7 H 0.06 1.27 7.12 -51.93 -0.37 0.90 16 8 N -0.68 -14.43 5.50 -100.82 -0.55 -14.99 16 9 C 0.21 5.35 2.42 -68.86 -0.17 5.18 16 10 H 0.00 0.01 7.16 -51.93 -0.37 -0.36 16 11 C -0.12 -3.12 9.17 37.16 0.34 -2.78 16 12 C -0.51 -14.14 8.59 -34.44 -0.30 -14.44 16 13 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.60 11.33 55.43 0.63 -24.97 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.08 -1.16 2.94 -90.54 -0.27 -1.43 16 21 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 22 C -0.13 -1.95 8.43 37.16 0.31 -1.63 16 23 C 0.06 0.82 4.86 -3.84 -0.02 0.80 16 24 H 0.06 0.59 6.21 -51.93 -0.32 0.27 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.08 0.97 5.81 -51.93 -0.30 0.67 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 32 H 0.07 1.17 6.54 -51.93 -0.34 0.83 16 33 H 0.33 6.97 7.18 -39.29 -0.28 6.69 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 2.17 6.08 -51.93 -0.32 1.85 16 36 H 0.00 0.04 7.43 -51.92 -0.39 -0.34 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.06 0.93 7.18 -51.93 -0.37 0.56 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.92 6.01 -51.92 -0.31 0.60 16 41 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -27.83 311.99 -8.88 -36.71 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.52 Total: 3.69 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.16 Total: -13.55 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.89 Total: -47.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.83 -8.88 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.036 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds