Wall clock time and date at job start Mon Mar 30 2020 03:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47206 * 2 1 4 4 C 1.46845 * 110.99753 * 45.78709 * 3 2 1 5 5 C 1.53042 * 109.52127 * 185.84058 * 4 3 2 6 6 C 1.53115 * 109.27626 * 300.82213 * 5 4 3 7 7 H 1.08997 * 109.58152 * 297.71261 * 6 5 4 8 8 N 1.46908 * 109.52210 * 177.55998 * 6 5 4 9 9 C 1.46904 * 111.00046 * 85.31829 * 8 6 5 10 10 H 1.09001 * 109.47014 * 325.00036 * 9 8 6 11 11 C 1.52999 * 109.47141 * 85.00248 * 9 8 6 12 12 C 1.50697 * 109.46891 * 205.00335 * 9 8 6 13 13 H 1.07991 * 120.00449 * 359.72239 * 12 9 8 14 14 C 1.37885 * 119.99686 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 C 1.53115 * 109.16208 * 57.66017 * 6 5 4 21 21 H 1.09005 * 109.50719 * 182.40459 * 20 6 5 22 22 C 1.52996 * 109.50757 * 62.28262 * 20 6 5 23 23 C 1.46840 * 111.00290 * 170.00348 * 3 2 1 24 24 H 1.09002 * 109.47074 * 299.99944 * 1 2 3 25 25 H 1.08998 * 109.47249 * 60.00344 * 1 2 3 26 26 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47074 * 240.00056 * 2 1 3 28 28 H 1.08995 * 109.47371 * 120.00180 * 2 1 3 29 29 H 1.08992 * 109.47105 * 305.85650 * 4 3 2 30 30 H 1.08999 * 109.46026 * 65.83875 * 4 3 2 31 31 H 1.09004 * 109.50159 * 180.88672 * 5 4 3 32 32 H 1.08999 * 109.50448 * 60.76761 * 5 4 3 33 33 H 1.00903 * 110.99384 * 321.36631 * 8 6 5 34 34 H 1.08993 * 109.47037 * 59.99983 * 11 9 8 35 35 H 1.08997 * 109.47084 * 180.02562 * 11 9 8 36 36 H 1.09007 * 109.46899 * 300.00332 * 11 9 8 37 37 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47105 * 60.00090 * 22 20 6 39 39 H 1.08996 * 109.47618 * 180.02562 * 22 20 6 40 40 H 1.09010 * 109.47014 * 300.00556 * 22 20 6 41 41 H 1.09001 * 109.46371 * 54.13925 * 23 3 2 42 42 H 1.09004 * 109.45746 * 294.17473 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1997 0.9826 5 6 1.7265 3.6621 0.8539 6 6 3.2354 3.7656 1.0922 7 1 3.4683 3.4404 2.1061 8 7 3.6664 5.1585 0.9124 9 6 3.4894 5.9284 2.1510 10 1 2.5970 5.5800 2.6710 11 6 4.7119 5.7353 3.0505 12 6 3.3376 7.3899 1.8167 13 1 3.3738 7.7150 0.7875 14 6 3.1587 8.3129 2.8253 15 7 3.1150 7.9170 4.0787 16 14 2.9781 10.1254 2.4114 17 1 3.0626 10.3080 0.9402 18 1 1.6631 10.6154 2.8968 19 1 4.0659 10.8938 3.0684 20 6 3.9655 2.8705 0.0871 21 1 5.0379 2.9069 0.2792 22 6 3.6834 3.3621 -1.3340 23 6 3.4680 1.4311 0.2380 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.2223 2.1206 0.7996 30 1 1.5180 1.8420 1.9875 31 1 1.1991 4.2641 1.5940 32 1 1.4902 4.0248 -0.1464 33 1 3.1767 5.5921 0.1441 34 1 5.6042 6.0836 2.5306 35 1 4.5805 6.3061 3.9697 36 1 4.8218 4.6780 3.2923 37 1 2.9888 8.5663 4.7882 38 1 4.0347 4.3885 -1.4398 39 1 4.2029 2.7243 -2.0490 40 1 2.6109 3.3237 -1.5256 41 1 3.9755 0.7936 -0.4860 42 1 3.6817 1.0768 1.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309053221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:10 Heat of formation + Delta-G solvation = -24.053154 kcal Electronic energy + Delta-G solvation = -18429.062030 eV Core-core repulsion = 15828.630844 eV Total energy + Delta-G solvation = -2600.431187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69920 -37.69530 -35.57054 -33.70029 -32.26229 -30.94284 -29.14952 -27.48023 -26.85898 -24.74271 -23.86007 -21.97832 -21.47634 -19.76318 -18.46414 -17.24188 -16.91075 -16.09694 -15.71684 -15.61992 -15.41520 -15.15335 -14.89743 -14.37545 -14.03154 -13.58228 -13.36074 -13.00244 -12.95329 -12.85873 -12.81069 -12.50650 -12.37272 -12.22675 -12.19030 -12.16226 -12.04328 -11.82440 -11.53505 -11.20823 -11.06401 -10.81937 -10.56133 -9.19997 -8.91662 -8.12823 -6.26406 1.40900 1.42818 1.54716 2.41896 2.98242 3.15996 3.61322 3.86929 3.91184 4.15543 4.24754 4.28484 4.35034 4.46452 4.55043 4.63717 4.64983 4.70266 4.82946 4.85914 4.90273 4.96939 5.00717 5.08102 5.12186 5.15735 5.20304 5.27054 5.33119 5.39363 5.43832 5.53560 5.67302 5.70992 5.87794 6.16844 6.22197 6.23744 6.52873 6.82799 7.05133 7.44252 8.93220 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037476 B = 0.005465 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.958234 B = 5122.554474 C = 5272.842880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 N -0.537 5.537 4 C 0.063 3.937 5 C -0.137 4.137 6 C 0.094 3.906 7 H 0.041 0.959 8 N -0.677 5.677 9 C 0.218 3.782 10 H -0.032 1.032 11 C -0.112 4.112 12 C -0.533 4.533 13 H 0.058 0.942 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.962 3.038 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.071 4.071 21 H 0.067 0.933 22 C -0.124 4.124 23 C 0.066 3.934 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.020 0.980 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.332 0.668 34 H 0.027 0.973 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -14.579 -8.442 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.065 4.065 5 C -0.177 4.177 6 C -0.017 4.017 7 H 0.059 0.941 8 N -0.307 5.307 9 C 0.109 3.891 10 H -0.014 1.014 11 C -0.170 4.170 12 C -0.572 4.572 13 H 0.076 0.924 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.787 3.213 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.090 4.090 21 H 0.085 0.915 22 C -0.182 4.182 23 C -0.062 4.062 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.576 -14.442 -8.599 17.004 hybrid contribution -0.821 0.939 1.296 1.799 sum -3.398 -13.503 -7.303 15.723 Atomic orbital electron populations 1.21915 0.94361 1.02629 1.02136 1.22158 0.96378 0.88179 1.01081 1.62014 1.03794 1.11125 1.49335 1.22046 0.99359 0.92321 0.92811 1.22225 0.97272 0.96609 1.01560 1.21576 0.92563 0.90040 0.97504 0.94054 1.60739 1.61262 1.01468 1.07205 1.18862 0.91646 0.91505 0.87058 1.01411 1.21541 0.98190 0.96761 1.00524 1.21618 1.49379 0.92873 0.93291 0.92361 1.25733 0.94773 1.03324 0.94817 1.70041 1.50661 1.35363 0.99842 0.85446 0.77514 0.79755 0.78536 1.19020 1.20661 1.20671 1.21083 0.98872 0.93063 0.95979 0.91452 1.21575 1.01850 1.00181 0.94576 1.22106 0.88131 0.96601 0.99412 0.92944 0.92037 0.90676 0.89574 0.95179 0.89169 0.96188 0.94165 0.90831 0.84985 0.95387 0.92641 0.96511 0.92935 0.93756 0.92239 0.92236 0.88975 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.16 71.98 0.66 -1.87 16 2 C 0.05 0.93 5.99 86.31 0.52 1.44 16 3 N -0.54 -12.91 4.09 -896.37 -3.66 -16.57 16 4 C 0.06 1.72 4.85 86.33 0.42 2.14 16 5 C -0.14 -4.59 4.98 30.65 0.15 -4.44 16 6 C 0.09 3.42 2.04 44.99 0.09 3.51 16 7 H 0.04 1.69 7.12 -2.39 -0.02 1.67 16 8 N -0.68 -29.19 5.50 -472.90 -2.60 -31.79 16 9 C 0.22 11.35 2.42 44.17 0.11 11.45 16 10 H -0.03 -1.83 7.16 -2.39 -0.02 -1.84 16 11 C -0.11 -5.78 9.17 71.98 0.66 -5.12 16 12 C -0.53 -29.74 8.59 25.60 0.22 -29.52 16 13 H 0.06 3.19 7.62 -2.92 -0.02 3.17 16 14 C 0.01 0.70 5.30 84.66 0.45 1.14 16 15 N -0.92 -53.80 11.33 21.45 0.24 -53.55 16 16 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 C -0.07 -2.09 2.94 -10.74 -0.03 -2.12 16 21 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 22 C -0.12 -3.42 8.43 71.98 0.61 -2.81 16 23 C 0.07 1.63 4.86 86.33 0.42 2.05 16 24 H 0.05 0.93 6.21 -2.39 -0.01 0.92 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.03 0.57 8.08 -2.39 -0.02 0.55 16 29 H 0.09 2.20 5.81 -2.39 -0.01 2.19 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 1.54 7.49 -2.38 -0.02 1.52 16 32 H 0.07 2.41 6.54 -2.39 -0.02 2.39 16 33 H 0.33 14.16 7.18 -89.69 -0.64 13.52 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 3.13 6.08 -2.39 -0.01 3.11 16 36 H 0.02 0.77 7.43 -2.38 -0.02 0.75 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.04 1.34 7.18 -2.39 -0.02 1.32 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.66 6.01 -2.38 -0.01 1.65 16 41 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 42 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -59.61 311.99 0.61 -59.00 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.33 Total: 21.02 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.27 Total: -24.14 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -6.02 Total: -101.92 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.61 0.61 -59.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.950 kcal (2) G-P(sol) polarization free energy of solvation -59.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds