Wall clock time and date at job start Mon Mar 30 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.46839 * 111.00175 * 45.79285 * 3 2 1 5 5 C 1.53038 * 109.52321 * 185.83828 * 4 3 2 6 6 C 1.53111 * 109.28032 * 300.82001 * 5 4 3 7 7 C 1.53117 * 109.16032 * 57.65459 * 6 5 4 8 8 H 1.08996 * 109.50401 * 62.28603 * 7 6 5 9 9 C 1.53002 * 109.50456 * 182.40865 * 7 6 5 10 10 N 1.46900 * 109.47017 * 294.79935 * 9 7 6 11 11 C 1.46900 * 111.00417 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46422 * 35.00484 * 11 10 9 13 13 C 1.53003 * 109.47263 * 275.00548 * 11 10 9 14 14 C 1.50701 * 109.47328 * 155.00029 * 11 10 9 15 15 H 1.08006 * 119.99794 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99819 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00249 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99775 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47415 * 89.99713 * 18 16 14 20 20 H 1.48501 * 109.47296 * 210.00024 * 18 16 14 21 21 H 1.48503 * 109.47034 * 329.99909 * 18 16 14 22 22 C 1.46851 * 110.99682 * 170.00115 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99782 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00219 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00064 * 2 1 3 27 27 H 1.09001 * 109.46998 * 239.99660 * 2 1 3 28 28 H 1.09000 * 109.46389 * 305.85096 * 4 3 2 29 29 H 1.08998 * 109.46466 * 65.81826 * 4 3 2 30 30 H 1.09001 * 109.50415 * 180.87699 * 5 4 3 31 31 H 1.08999 * 109.53506 * 60.78271 * 5 4 3 32 32 H 1.09006 * 109.52471 * 297.75264 * 6 5 4 33 33 H 1.08999 * 109.57685 * 177.58903 * 6 5 4 34 34 H 1.08999 * 109.47408 * 54.79782 * 9 7 6 35 35 H 1.08996 * 109.47328 * 174.80447 * 9 7 6 36 36 H 1.00905 * 110.99803 * 56.04417 * 10 9 7 37 37 H 1.08998 * 109.46949 * 299.99399 * 13 11 10 38 38 H 1.09001 * 109.47004 * 59.99590 * 13 11 10 39 39 H 1.08994 * 109.46954 * 179.97438 * 13 11 10 40 40 H 0.97005 * 120.00178 * 179.97438 * 17 16 14 41 41 H 1.08992 * 109.46356 * 294.17825 * 22 3 2 42 42 H 1.08997 * 109.45917 * 54.14675 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2939 2.1997 0.9827 5 6 1.7266 3.6620 0.8540 6 6 3.2355 3.7657 1.0921 7 6 3.9655 2.8705 0.0870 8 1 3.7645 3.2207 -0.9253 9 6 5.4707 2.9215 0.3567 10 7 5.9693 4.2784 0.0954 11 6 7.4143 4.3656 0.3448 12 1 7.8893 3.4265 0.0607 13 6 7.6601 4.6322 1.8313 14 6 7.9979 5.4905 -0.4706 15 1 7.3591 6.0819 -1.1100 16 6 9.3473 5.7647 -0.4005 17 7 10.1250 5.0450 0.3784 18 14 10.0706 7.1596 -1.4107 19 1 10.0269 8.4167 -0.6216 20 1 11.4791 6.8413 -1.7571 21 1 9.2807 7.3296 -2.6567 22 6 3.4681 1.4310 0.2380 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 0.2223 2.1206 0.7995 29 1 1.5178 1.8418 1.9875 30 1 1.1992 4.2641 1.5939 31 1 1.4902 4.0254 -0.1461 32 1 3.4676 3.4395 2.1060 33 1 3.5561 4.7990 0.9595 34 1 5.6627 2.6579 1.3967 35 1 5.9812 2.2147 -0.2975 36 1 5.4662 4.9602 0.6433 37 1 7.1851 5.5713 2.1153 38 1 7.2379 3.8185 2.4210 39 1 8.7323 4.6965 2.0164 40 1 11.0744 5.2377 0.4275 41 1 3.6818 1.0767 1.2463 42 1 3.9755 0.7936 -0.4860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309061293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:57 Heat of formation + Delta-G solvation = -12.399178 kcal Electronic energy + Delta-G solvation = -17808.075640 eV Core-core repulsion = 15208.149808 eV Total energy + Delta-G solvation = -2599.925832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.30214 -36.32644 -34.29919 -32.45064 -31.13877 -29.94207 -27.74941 -25.24587 -25.02350 -23.49987 -22.47864 -20.41739 -20.03847 -19.47170 -16.44084 -15.98636 -15.21827 -15.08670 -14.72339 -14.31328 -14.05652 -13.71625 -13.48063 -13.13024 -12.68337 -12.60670 -12.21512 -11.90139 -11.76036 -11.49922 -11.42166 -11.13223 -11.01396 -10.88180 -10.74530 -10.53100 -10.31645 -10.19138 -10.06512 -9.97675 -9.69046 -8.93019 -8.32235 -8.30896 -7.14844 -5.94238 -3.97229 3.35515 3.41651 3.46839 3.84746 4.48053 4.79246 4.88390 4.94261 5.08203 5.11552 5.22834 5.28997 5.37304 5.42761 5.52338 5.60643 5.68394 5.71838 5.80437 5.86199 5.91343 5.92764 6.01157 6.08116 6.17427 6.34064 6.38948 6.59569 6.73312 6.74809 6.88217 7.09311 7.11679 7.15249 7.43817 7.77973 7.93976 8.33391 8.61296 8.68863 9.10390 9.68091 11.12879 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.049495 B = 0.004242 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.577983 B = 6598.326274 C = 6658.222305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.050 3.950 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.080 4.080 8 H 0.086 0.914 9 C 0.067 3.933 10 N -0.682 5.682 11 C 0.210 3.790 12 H 0.032 0.968 13 C -0.168 4.168 14 C -0.493 4.493 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.063 3.937 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.015 0.985 35 H 0.063 0.937 36 H 0.324 0.676 37 H 0.026 0.974 38 H 0.004 0.996 39 H 0.088 0.912 40 H 0.259 0.741 41 H 0.029 0.971 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.970 -7.777 2.261 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.077 4.077 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.100 4.100 8 H 0.104 0.896 9 C -0.064 4.064 10 N -0.313 5.313 11 C 0.102 3.898 12 H 0.050 0.950 13 C -0.227 4.227 14 C -0.532 4.532 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.065 4.065 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.046 0.954 38 H 0.023 0.977 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.786 -7.711 1.160 18.509 hybrid contribution 0.761 0.286 1.408 1.625 sum -16.026 -7.425 2.568 17.848 Atomic orbital electron populations 1.21942 0.95256 1.01647 1.02455 1.22072 0.95518 0.89524 1.00670 1.61985 1.04318 1.10034 1.49943 1.22206 0.98557 0.93976 0.92993 1.21577 0.96395 0.95108 1.02242 1.21640 0.94502 1.00728 0.98629 1.21200 0.94676 0.93340 1.00741 0.89583 1.21861 0.92970 0.93714 0.97835 1.60818 1.06895 1.02579 1.60963 1.19171 0.82005 0.97455 0.91138 0.94981 1.22424 1.04541 0.96602 0.99167 1.21184 0.92620 1.14999 1.24396 0.91945 1.24957 0.97139 0.96745 0.95790 1.69887 1.04986 1.40081 1.38948 0.86512 0.78147 0.82226 0.80588 1.20890 1.21418 1.19846 1.22105 0.87085 0.97989 0.99324 0.92435 0.91740 0.92396 0.95231 0.90714 0.90480 0.95429 0.91957 0.91069 0.92894 0.91108 0.96729 0.91845 0.85905 0.95442 0.97746 0.89328 0.93141 0.95243 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.16 37.16 0.34 -0.94 16 2 C 0.05 0.50 5.99 -3.82 -0.02 0.48 16 3 N -0.54 -6.51 4.81 -234.67 -1.13 -7.64 16 4 C 0.05 0.56 4.85 -3.84 -0.02 0.54 16 5 C -0.12 -1.34 6.09 -26.65 -0.16 -1.50 16 6 C -0.12 -1.60 5.00 -26.61 -0.13 -1.73 16 7 C -0.08 -1.21 2.56 -90.54 -0.23 -1.44 16 8 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 9 C 0.07 1.22 4.94 -3.82 -0.02 1.20 16 10 N -0.68 -14.72 6.23 -107.95 -0.67 -15.39 16 11 C 0.21 5.39 2.57 -68.86 -0.18 5.21 16 12 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 13 C -0.17 -4.13 8.94 37.16 0.33 -3.79 16 14 C -0.49 -13.90 8.84 -34.44 -0.30 -14.21 16 15 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 16 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 17 N -0.90 -26.12 11.32 55.43 0.63 -25.49 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.06 0.84 4.71 -3.83 -0.02 0.82 16 23 H 0.06 0.46 6.21 -51.93 -0.32 0.14 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.75 5.81 -51.93 -0.30 0.45 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.02 6.80 -51.93 -0.35 0.67 16 34 H 0.01 0.27 7.43 -51.93 -0.39 -0.12 16 35 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.32 6.63 6.79 -39.29 -0.27 6.36 16 37 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 39 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -28.71 318.33 -9.67 -38.39 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.77 Total: 2.51 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.51 Total: -13.94 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -1.17 Total: -48.52 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.71 -9.67 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.986 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds