Wall clock time and date at job start Mon Mar 30 2020 03:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47100 * 2 1 4 4 C 1.46843 * 111.00330 * 294.20882 * 3 2 1 5 5 C 1.53039 * 109.57475 * 174.19391 * 4 3 2 6 6 C 1.53119 * 109.27921 * 59.08512 * 5 4 3 7 7 H 1.09005 * 109.51649 * 62.37469 * 6 5 4 8 8 N 1.46897 * 109.52449 * 182.50120 * 6 5 4 9 9 C 1.46899 * 110.99642 * 175.92219 * 8 6 5 10 10 C 1.46895 * 111.00032 * 299.87332 * 8 6 5 11 11 C 1.50706 * 109.47182 * 170.00046 * 10 8 6 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.53115 * 109.21066 * 302.44252 * 6 5 4 20 20 H 1.08999 * 109.50629 * 177.56034 * 19 6 5 21 21 C 1.53005 * 109.50361 * 297.63839 * 19 6 5 22 22 C 1.46853 * 110.99736 * 170.00166 * 3 2 1 23 23 H 1.09000 * 109.46819 * 59.99471 * 1 2 3 24 24 H 1.08992 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47200 * 299.99903 * 1 2 3 26 26 H 1.08998 * 109.46774 * 240.00049 * 2 1 3 27 27 H 1.09000 * 109.46819 * 120.00529 * 2 1 3 28 28 H 1.08997 * 109.46488 * 294.17836 * 4 3 2 29 29 H 1.09000 * 109.46139 * 54.15770 * 4 3 2 30 30 H 1.09000 * 109.45315 * 299.17271 * 5 4 3 31 31 H 1.09003 * 109.55587 * 179.05928 * 5 4 3 32 32 H 1.09008 * 109.47172 * 183.95912 * 9 8 6 33 33 H 1.09004 * 109.47214 * 303.95284 * 9 8 6 34 34 H 1.08996 * 109.47566 * 63.95573 * 9 8 6 35 35 H 1.09001 * 109.47613 * 50.00392 * 10 8 6 36 36 H 1.09006 * 109.47521 * 290.00010 * 10 8 6 37 37 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 38 38 H 1.08997 * 109.46984 * 60.00066 * 21 19 6 39 39 H 1.08996 * 109.47018 * 180.02562 * 21 19 6 40 40 H 1.08999 * 109.46935 * 300.00204 * 21 19 6 41 41 H 1.08998 * 109.46321 * 65.82248 * 22 3 2 42 42 H 1.09005 * 109.45895 * 305.85425 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0686 -1.2503 5 6 2.0611 3.5440 -1.1581 6 6 3.5677 3.6483 -0.9056 7 1 4.1088 3.2138 -1.7462 8 7 3.9439 5.0604 -0.7565 9 6 5.3669 5.1929 -0.4169 10 6 3.6190 5.8226 -1.9695 11 6 3.7869 7.2953 -1.6974 12 1 4.1037 7.6314 -0.7211 13 6 3.5360 8.2136 -2.6947 14 7 3.1497 7.8045 -3.8834 15 14 3.7434 10.0391 -2.3571 16 1 2.4610 10.5997 -1.8607 17 1 4.7996 10.2361 -1.3320 18 1 4.1346 10.7330 -3.6105 19 6 3.9175 2.8874 0.3763 20 1 4.9950 2.9219 0.5374 21 6 3.2023 3.5330 1.5649 22 6 3.4681 1.4310 0.2380 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1943 1.6028 -2.0816 29 1 0.5904 1.9907 -1.4146 30 1 1.5209 4.0141 -0.3363 31 1 1.8130 4.0474 -2.0926 32 1 5.6028 6.2430 -0.2434 33 1 5.5803 4.6189 0.4849 34 1 5.9737 4.8154 -1.2399 35 1 2.5876 5.6220 -2.2593 36 1 4.2879 5.5237 -2.7766 37 1 3.0417 6.8565 -4.0585 38 1 2.1249 3.4969 1.4038 39 1 3.4521 2.9912 2.4771 40 1 3.5209 4.5710 1.6604 41 1 3.9888 0.9682 -0.6002 42 1 3.7028 0.8899 1.1547 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336653010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:59 Heat of formation + Delta-G solvation = -19.947890 kcal Electronic energy + Delta-G solvation = -18551.016706 eV Core-core repulsion = 15950.763537 eV Total energy + Delta-G solvation = -2600.253169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93181 -38.09402 -35.48276 -34.02024 -32.69012 -30.63640 -28.81584 -27.86778 -26.32007 -24.91292 -23.88946 -22.68459 -21.82930 -19.52662 -18.91243 -17.57506 -16.52079 -16.25324 -15.86151 -15.68548 -15.53173 -15.45097 -14.89188 -14.40148 -14.29989 -13.90976 -13.62165 -13.22272 -13.08330 -12.92896 -12.81081 -12.65703 -12.43072 -12.34764 -12.15337 -12.05668 -11.93391 -11.87439 -11.75111 -11.27672 -10.95217 -10.73105 -10.54448 -9.25354 -9.08838 -8.67584 -6.37402 1.52832 1.62269 1.80094 2.55783 2.91450 3.12768 3.18943 3.69543 3.80581 4.08239 4.09851 4.20715 4.29910 4.35739 4.43400 4.48745 4.54492 4.58249 4.63522 4.67912 4.76574 4.83176 4.86778 4.88489 4.95816 4.99346 5.04789 5.11219 5.14653 5.24546 5.28900 5.37540 5.41063 5.68416 5.81699 6.00430 6.11159 6.20222 6.41024 6.43582 6.66810 7.42987 8.70877 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037339 B = 0.005690 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.701752 B = 4919.684736 C = 5300.785885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.067 3.933 5 C -0.104 4.104 6 C 0.087 3.913 7 H 0.005 0.995 8 N -0.529 5.529 9 C 0.040 3.960 10 C 0.192 3.808 11 C -0.595 4.595 12 H 0.054 0.946 13 C -0.038 4.038 14 N -0.939 5.939 15 Si 1.124 2.876 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.283 1.283 19 C -0.076 4.076 20 H 0.076 0.924 21 C -0.117 4.117 22 C 0.067 3.933 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.088 0.912 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.001 0.999 35 H 0.010 0.990 36 H -0.055 1.055 37 H 0.251 0.749 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.027 0.973 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 -15.461 9.869 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.061 4.061 5 C -0.142 4.142 6 C -0.022 4.022 7 H 0.023 0.977 8 N -0.252 5.252 9 C -0.108 4.108 10 C 0.066 3.934 11 C -0.634 4.634 12 H 0.073 0.927 13 C -0.235 4.235 14 N -0.577 5.577 15 Si 0.945 3.055 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.209 1.209 19 C -0.095 4.095 20 H 0.095 0.905 21 C -0.174 4.174 22 C -0.061 4.061 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.020 0.980 35 H 0.027 0.973 36 H -0.038 1.038 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.919 -13.543 9.966 16.924 hybrid contribution 1.032 -2.109 -1.361 2.714 sum -0.887 -15.652 8.606 17.884 Atomic orbital electron populations 1.21786 0.94281 1.02271 1.02020 1.22138 0.96671 0.87681 1.01203 1.61955 1.13947 1.16352 1.34215 1.21993 1.01152 0.92781 0.90204 1.21587 0.95308 0.96402 1.00929 1.21725 0.95703 0.88372 0.96416 0.97693 1.62017 1.18555 1.08921 1.35706 1.22248 0.87522 1.01778 0.99261 1.19596 0.93550 0.93860 0.86442 1.22318 1.48974 0.92118 0.99945 0.92750 1.27413 0.93039 1.10729 0.92347 1.70904 1.46182 1.17175 1.23462 0.82850 0.77641 0.69205 0.75833 1.19822 1.19414 1.20906 1.21221 0.99927 0.94040 0.94355 0.90536 1.21493 1.00624 0.99466 0.95846 1.22102 0.87262 0.95590 1.01136 0.93375 0.90693 0.92284 0.95121 0.89410 0.95792 0.89439 0.91114 0.94145 0.92672 0.89511 0.98020 0.97250 1.03767 0.93949 0.92701 0.92016 0.93966 0.95514 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.84 71.98 0.71 -1.74 16 2 C 0.05 0.93 5.68 86.30 0.49 1.42 16 3 N -0.54 -13.02 3.94 -896.35 -3.53 -16.56 16 4 C 0.07 1.88 5.29 86.33 0.46 2.34 16 5 C -0.10 -3.75 4.75 30.65 0.15 -3.60 16 6 C 0.09 3.21 1.70 44.99 0.08 3.29 16 7 H 0.01 0.21 8.14 -2.38 -0.02 0.19 16 8 N -0.53 -23.55 3.78 -901.13 -3.41 -26.95 16 9 C 0.04 1.61 8.82 127.69 1.13 2.74 16 10 C 0.19 10.52 3.85 85.56 0.33 10.85 16 11 C -0.60 -34.93 8.52 25.60 0.22 -34.71 16 12 H 0.05 3.16 7.10 -2.91 -0.02 3.14 16 13 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 14 N -0.94 -59.40 13.65 21.45 0.29 -59.10 16 15 Si 1.12 51.52 29.90 68.60 2.05 53.57 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 C -0.08 -2.19 2.20 -10.74 -0.02 -2.22 16 20 H 0.08 2.08 6.42 -2.39 -0.02 2.06 16 21 C -0.12 -3.36 8.50 71.98 0.61 -2.75 16 22 C 0.07 1.59 4.90 86.32 0.42 2.01 16 23 H 0.05 0.88 6.43 -2.39 -0.02 0.86 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 26 H 0.03 0.56 8.12 -2.39 -0.02 0.55 16 27 H 0.09 1.36 7.99 -2.39 -0.02 1.34 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 2.25 6.21 -2.39 -0.01 2.23 16 30 H 0.07 2.68 6.59 -2.39 -0.02 2.66 16 31 H 0.04 1.66 6.34 -2.39 -0.02 1.65 16 32 H 0.05 2.40 6.86 -2.38 -0.02 2.38 16 33 H 0.09 2.83 5.92 -2.38 -0.01 2.82 16 34 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.01 0.55 5.75 -2.39 -0.01 0.54 16 36 H -0.06 -3.29 7.99 -2.38 -0.02 -3.31 16 37 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 38 H 0.05 1.70 6.02 -2.39 -0.01 1.68 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.04 1.39 7.28 -2.39 -0.02 1.37 16 41 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 1.86 8.02 -2.38 -0.02 1.84 16 Total: -1.00 -66.36 309.36 1.49 -64.87 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.07 Total: 8.37 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 5.02 Total: -24.19 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -6.65 Total: -102.62 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -66.36 1.49 -64.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336653010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.919 kcal (2) G-P(sol) polarization free energy of solvation -66.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds