Wall clock time and date at job start Mon Mar 30 2020 03:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.52999 * 109.46818 * 119.99695 * 2 1 3 5 5 N 1.46897 * 109.47073 * 174.58288 * 4 2 1 6 6 C 1.46898 * 111.00184 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47314 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00112 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00058 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99982 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00105 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47248 * 89.99598 * 11 9 7 13 13 H 1.48500 * 109.47081 * 210.00123 * 11 9 7 14 14 H 1.48497 * 109.47016 * 329.99984 * 11 9 7 15 15 N 1.46894 * 109.47236 * 239.99815 * 2 1 3 16 16 C 1.47996 * 111.00220 * 75.21699 * 15 2 1 17 17 C 1.50448 * 112.83377 * 191.34305 * 16 15 2 18 18 C 1.54307 * 108.49219 * 93.72762 * 17 16 15 19 19 C 1.45874 * 112.18615 * 281.46561 * 18 17 16 20 20 C 1.54307 * 112.18921 * 61.12603 * 19 18 17 21 21 C 1.48006 * 111.00132 * 306.49626 * 15 2 1 22 22 H 1.08996 * 109.47275 * 184.49449 * 1 2 3 23 23 H 1.08998 * 109.47128 * 304.49787 * 1 2 3 24 24 H 1.09003 * 109.46497 * 64.49829 * 1 2 3 25 25 H 1.08999 * 109.47430 * 294.58098 * 4 2 1 26 26 H 1.09002 * 109.47233 * 54.58197 * 4 2 1 27 27 H 1.00897 * 111.00440 * 56.04283 * 5 4 2 28 28 H 1.08995 * 109.46972 * 299.99963 * 6 5 4 29 29 H 1.09005 * 109.47268 * 60.00143 * 6 5 4 30 30 H 0.96999 * 119.99906 * 179.97438 * 10 9 7 31 31 H 1.09008 * 108.81099 * 312.20903 * 16 15 2 32 32 H 1.09005 * 108.81208 * 70.47554 * 16 15 2 33 33 H 1.08999 * 109.62900 * 334.02741 * 17 16 15 34 34 H 1.09000 * 109.63159 * 213.43432 * 17 16 15 35 35 H 1.09005 * 108.93409 * 160.77021 * 18 17 16 36 36 H 1.09000 * 108.94099 * 42.16867 * 18 17 16 37 37 H 1.08999 * 108.93981 * 181.82294 * 19 18 17 38 38 H 1.09000 * 108.94220 * 300.42752 * 19 18 17 39 39 H 1.08997 * 109.63378 * 41.16217 * 20 19 18 40 40 H 1.08996 * 109.63632 * 161.75840 * 20 19 18 41 41 H 1.09003 * 108.80815 * 323.97360 * 21 15 2 42 42 H 1.08999 * 108.80894 * 205.70416 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5031 -0.8355 1.1858 6 6 4.0293 -1.5249 2.3714 7 6 5.5297 -1.6237 2.2705 8 1 6.0412 -1.2148 1.4118 9 6 6.2494 -2.2351 3.2751 10 7 7.5587 -2.3217 3.1868 11 14 5.3647 -2.9417 4.7608 12 1 5.0055 -4.3581 4.4957 13 1 6.2550 -2.8705 5.9472 14 1 4.1302 -2.1584 5.0206 15 7 2.0197 -0.6925 -1.1994 16 6 1.8642 0.1556 -2.4022 17 6 2.0945 -0.5997 -3.6828 18 6 0.7331 -1.1050 -4.2046 19 6 0.2767 -2.2932 -3.4921 20 6 0.0754 -2.0278 -1.9854 21 6 1.4217 -2.0415 -1.3143 22 1 -0.3633 -1.0245 0.0805 23 1 -0.3633 0.5820 0.8469 24 1 -0.3632 0.4425 -0.9276 25 1 1.7581 -0.1544 2.1366 26 1 1.5996 -1.7170 1.2992 27 1 3.9322 0.0708 1.0740 28 1 3.7611 -0.9640 3.2667 29 1 3.6027 -2.5264 2.4286 30 1 8.0651 -2.7516 3.8937 31 1 0.8550 0.5675 -2.4137 32 1 2.5767 0.9786 -2.3465 33 1 2.7523 -1.4481 -3.4943 34 1 2.5474 0.0616 -4.4216 35 1 0.8264 -1.3421 -5.2645 36 1 -0.0074 -0.3142 -4.0847 37 1 -0.6689 -2.6226 -3.9227 38 1 1.0149 -3.0855 -3.6161 39 1 -0.3941 -1.0542 -1.8445 40 1 -0.5552 -2.8070 -1.5573 41 1 1.3123 -2.4637 -0.3153 42 1 2.0951 -2.6765 -1.8900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380015943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:05 Heat of formation + Delta-G solvation = 3.271364 kcal Electronic energy + Delta-G solvation = -18267.539095 eV Core-core repulsion = 15668.292789 eV Total energy + Delta-G solvation = -2599.246307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76049 -36.27396 -34.17405 -32.26144 -32.08147 -30.35231 -27.69454 -26.36824 -24.98781 -23.82670 -20.97156 -20.76205 -20.42943 -19.07253 -16.69510 -16.53897 -15.69686 -15.13383 -14.46133 -14.21371 -13.96099 -13.77995 -13.59346 -13.10536 -12.97061 -12.56952 -12.37079 -12.24359 -11.92389 -11.82418 -11.65588 -11.41297 -11.21754 -10.69550 -10.63017 -10.55446 -10.48582 -10.27167 -10.19638 -10.04940 -9.72862 -9.18757 -8.51244 -7.72051 -7.19708 -5.98163 -3.94740 3.33423 3.40114 3.42975 4.06406 4.48517 4.63117 4.72855 4.88872 5.03003 5.15488 5.22975 5.26399 5.33608 5.35030 5.46987 5.52317 5.61882 5.67626 5.77384 5.83393 5.93543 5.94634 5.98834 6.03077 6.07906 6.10407 6.16446 6.21623 6.23710 6.37802 6.41868 6.53569 6.87740 7.12969 7.46644 7.54603 7.72666 8.06194 8.53466 8.77602 9.12426 9.64770 11.15435 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034321 B = 0.005232 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.625791 B = 5350.316302 C = 5553.843975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.074 0.926 4 C 0.066 3.934 5 N -0.659 5.659 6 C 0.163 3.837 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.903 5.903 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 N -0.516 5.516 16 C 0.063 3.937 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.161 4.161 21 C 0.064 3.936 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.334 0.666 28 H -0.021 1.021 29 H 0.018 0.982 30 H 0.262 0.738 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.097 3.673 -11.531 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.093 0.907 4 C -0.064 4.064 5 N -0.289 5.289 6 C 0.035 3.965 7 C -0.547 4.547 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.705 3.295 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.194 1.194 15 N -0.239 5.239 16 C -0.064 4.064 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.199 4.199 21 C -0.064 4.064 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.151 0.849 28 H -0.004 1.004 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.451 2.955 -11.776 20.446 hybrid contribution -1.386 0.330 1.453 2.035 sum -17.837 3.285 -10.323 20.869 Atomic orbital electron populations 1.22671 0.98284 1.02219 1.01246 1.21680 0.91456 0.97877 0.91112 0.90734 1.21990 0.91827 0.98929 0.93674 1.60291 1.01305 1.25097 1.42230 1.19995 0.96405 0.93485 0.86577 1.21091 0.89351 1.37413 1.06866 0.90234 1.24910 0.94709 0.95832 0.97998 1.69906 1.05640 1.44731 1.33971 0.86832 0.79877 0.79924 0.82897 1.20255 1.21343 1.19378 1.61797 1.58882 1.02032 1.01206 1.21757 0.99095 0.95799 0.89733 1.21416 0.97066 1.01142 0.96229 1.20583 0.97309 0.98172 0.99472 1.20560 1.00802 0.98456 0.95730 1.22351 0.99517 1.02462 0.95607 1.21798 0.92602 0.90940 1.01024 0.91919 0.92687 0.92647 0.96452 0.91962 0.84923 1.00391 0.96368 0.92792 0.95589 0.91488 0.90292 0.91522 0.92544 0.92752 0.92953 0.91999 0.90773 0.91995 0.91034 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 7.49 37.16 0.28 -1.82 16 2 C 0.09 1.22 2.52 -67.71 -0.17 1.05 16 3 H 0.07 1.03 8.01 -51.93 -0.42 0.62 16 4 C 0.07 1.13 4.93 -3.83 -0.02 1.11 16 5 N -0.66 -13.97 6.20 -115.06 -0.71 -14.69 16 6 C 0.16 4.08 4.51 -4.98 -0.02 4.06 16 7 C -0.51 -14.94 9.87 -34.44 -0.34 -15.28 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 11 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 15 N -0.52 -7.33 4.37 -227.91 -0.99 -8.32 16 16 C 0.06 0.76 4.86 -4.49 -0.02 0.74 16 17 C -0.12 -1.31 5.63 -27.32 -0.15 -1.47 16 18 C -0.12 -1.12 5.30 -29.42 -0.16 -1.28 16 19 C -0.12 -1.16 5.30 -29.42 -0.16 -1.32 16 20 C -0.16 -1.73 4.33 -27.32 -0.12 -1.85 16 21 C 0.06 0.86 4.53 -4.49 -0.02 0.84 16 22 H 0.06 0.71 6.03 -51.93 -0.31 0.40 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.59 5.52 -51.93 -0.29 0.30 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 27 H 0.33 7.00 8.72 -39.29 -0.34 6.65 16 28 H -0.02 -0.54 7.20 -51.93 -0.37 -0.91 16 29 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.03 0.29 5.08 -51.92 -0.26 0.03 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.99 7.08 -51.93 -0.37 0.62 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 39 H 0.07 0.80 4.04 -51.93 -0.21 0.59 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.06 5.73 -51.93 -0.30 0.76 16 42 H 0.07 1.02 6.59 -51.93 -0.34 0.68 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -30.63 303.89 -9.29 -39.92 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.27 Total: 1.98 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.00 Total: -13.33 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.94 Total: -50.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.63 -9.29 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380015943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.196 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds