Wall clock time and date at job start Mon Mar 30 2020 03:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.52999 * 109.46818 * 119.99695 * 2 1 3 5 5 N 1.46897 * 109.47073 * 174.58288 * 4 2 1 6 6 C 1.46898 * 111.00184 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47314 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00112 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00058 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99982 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00105 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47248 * 89.99598 * 11 9 7 13 13 H 1.48500 * 109.47081 * 210.00123 * 11 9 7 14 14 H 1.48497 * 109.47016 * 329.99984 * 11 9 7 15 15 N 1.46894 * 109.47236 * 239.99815 * 2 1 3 16 16 C 1.47996 * 111.00220 * 75.21699 * 15 2 1 17 17 C 1.50448 * 112.83377 * 191.34305 * 16 15 2 18 18 C 1.54307 * 108.49219 * 93.72762 * 17 16 15 19 19 C 1.45874 * 112.18615 * 281.46561 * 18 17 16 20 20 C 1.54307 * 112.18921 * 61.12603 * 19 18 17 21 21 C 1.48006 * 111.00132 * 306.49626 * 15 2 1 22 22 H 1.08996 * 109.47275 * 184.49449 * 1 2 3 23 23 H 1.08998 * 109.47128 * 304.49787 * 1 2 3 24 24 H 1.09003 * 109.46497 * 64.49829 * 1 2 3 25 25 H 1.08999 * 109.47430 * 294.58098 * 4 2 1 26 26 H 1.09002 * 109.47233 * 54.58197 * 4 2 1 27 27 H 1.00897 * 111.00440 * 56.04283 * 5 4 2 28 28 H 1.08995 * 109.46972 * 299.99963 * 6 5 4 29 29 H 1.09005 * 109.47268 * 60.00143 * 6 5 4 30 30 H 0.96999 * 119.99906 * 179.97438 * 10 9 7 31 31 H 1.09008 * 108.81099 * 312.20903 * 16 15 2 32 32 H 1.09005 * 108.81208 * 70.47554 * 16 15 2 33 33 H 1.08999 * 109.62900 * 334.02741 * 17 16 15 34 34 H 1.09000 * 109.63159 * 213.43432 * 17 16 15 35 35 H 1.09005 * 108.93409 * 160.77021 * 18 17 16 36 36 H 1.09000 * 108.94099 * 42.16867 * 18 17 16 37 37 H 1.08999 * 108.93981 * 181.82294 * 19 18 17 38 38 H 1.09000 * 108.94220 * 300.42752 * 19 18 17 39 39 H 1.08997 * 109.63378 * 41.16217 * 20 19 18 40 40 H 1.08996 * 109.63632 * 161.75840 * 20 19 18 41 41 H 1.09003 * 108.80815 * 323.97360 * 21 15 2 42 42 H 1.08999 * 108.80894 * 205.70416 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5031 -0.8355 1.1858 6 6 4.0293 -1.5249 2.3714 7 6 5.5297 -1.6237 2.2705 8 1 6.0412 -1.2148 1.4118 9 6 6.2494 -2.2351 3.2751 10 7 7.5587 -2.3217 3.1868 11 14 5.3647 -2.9417 4.7608 12 1 5.0055 -4.3581 4.4957 13 1 6.2550 -2.8705 5.9472 14 1 4.1302 -2.1584 5.0206 15 7 2.0197 -0.6925 -1.1994 16 6 1.8642 0.1556 -2.4022 17 6 2.0945 -0.5997 -3.6828 18 6 0.7331 -1.1050 -4.2046 19 6 0.2767 -2.2932 -3.4921 20 6 0.0754 -2.0278 -1.9854 21 6 1.4217 -2.0415 -1.3143 22 1 -0.3633 -1.0245 0.0805 23 1 -0.3633 0.5820 0.8469 24 1 -0.3632 0.4425 -0.9276 25 1 1.7581 -0.1544 2.1366 26 1 1.5996 -1.7170 1.2992 27 1 3.9322 0.0708 1.0740 28 1 3.7611 -0.9640 3.2667 29 1 3.6027 -2.5264 2.4286 30 1 8.0651 -2.7516 3.8937 31 1 0.8550 0.5675 -2.4137 32 1 2.5767 0.9786 -2.3465 33 1 2.7523 -1.4481 -3.4943 34 1 2.5474 0.0616 -4.4216 35 1 0.8264 -1.3421 -5.2645 36 1 -0.0074 -0.3142 -4.0847 37 1 -0.6689 -2.6226 -3.9227 38 1 1.0149 -3.0855 -3.6161 39 1 -0.3941 -1.0542 -1.8445 40 1 -0.5552 -2.8070 -1.5573 41 1 1.3123 -2.4637 -0.3153 42 1 2.0951 -2.6765 -1.8900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380015943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:05 Heat of formation + Delta-G solvation = -18.359222 kcal Electronic energy + Delta-G solvation = -18268.477068 eV Core-core repulsion = 15668.292789 eV Total energy + Delta-G solvation = -2600.184279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75648 -37.56751 -35.70853 -34.23003 -33.07770 -31.54039 -29.44230 -27.38956 -26.15513 -25.16648 -22.92651 -21.85666 -21.29612 -20.15838 -18.88281 -17.62031 -16.74398 -16.56639 -16.00152 -15.58215 -15.40904 -14.96383 -14.63504 -14.54837 -14.18590 -13.91489 -13.72258 -13.43359 -13.28350 -13.05488 -12.92009 -12.61576 -12.48731 -12.35815 -12.07562 -11.80888 -11.53139 -11.48458 -11.37223 -11.32043 -11.21049 -10.98008 -10.78899 -8.92028 -8.75004 -8.27827 -6.31467 1.34879 1.36622 1.47783 2.35410 3.01539 3.06129 3.59585 3.81221 3.92707 3.94256 4.20060 4.22837 4.28149 4.42567 4.50226 4.54039 4.60385 4.67522 4.72834 4.81089 4.83661 4.87368 4.95020 5.01508 5.07300 5.13034 5.17952 5.18988 5.27054 5.29435 5.34476 5.43433 5.49675 5.55363 5.56366 6.02178 6.42247 6.52282 6.66015 6.74404 6.87964 7.33618 8.89291 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034321 B = 0.005232 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.625791 B = 5350.316302 C = 5553.843975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.075 0.925 4 C 0.067 3.933 5 N -0.668 5.668 6 C 0.176 3.824 7 C -0.523 4.523 8 H 0.035 0.965 9 C 0.006 3.994 10 N -0.950 5.950 11 Si 0.953 3.047 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.252 1.252 15 N -0.542 5.542 16 C 0.065 3.935 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.152 4.152 21 C 0.070 3.930 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.332 0.668 28 H -0.019 1.019 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 3.821 -11.393 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 H 0.093 0.907 4 C -0.063 4.063 5 N -0.298 5.298 6 C 0.047 3.953 7 C -0.561 4.561 8 H 0.053 0.947 9 C -0.191 4.191 10 N -0.590 5.590 11 Si 0.776 3.224 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.176 1.176 15 N -0.266 5.266 16 C -0.061 4.061 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.191 4.191 21 C -0.058 4.058 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.149 0.851 28 H -0.001 1.001 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.271 3.115 -11.659 22.738 hybrid contribution -0.432 0.319 1.321 1.426 sum -19.703 3.434 -10.337 22.514 Atomic orbital electron populations 1.22558 0.95778 1.02639 1.02406 1.21577 0.93300 0.97142 0.89587 0.90700 1.22089 0.88828 0.99524 0.95817 1.60194 1.04068 1.25019 1.40487 1.19727 0.93501 0.93939 0.88121 1.21348 0.91849 1.37282 1.05617 0.94681 1.25893 0.95455 0.96106 1.01632 1.70063 1.07614 1.45885 1.35482 0.85632 0.79032 0.79429 0.78274 1.19181 1.20551 1.17586 1.61703 1.60037 1.02671 1.02176 1.21772 0.99669 0.95377 0.89315 1.21406 0.97806 1.00411 0.96115 1.20547 0.96357 0.98193 0.99987 1.20553 1.01346 0.98405 0.95152 1.22257 0.97736 1.03068 0.96012 1.21690 0.93800 0.90312 0.99997 0.91832 0.91672 0.91329 0.95629 0.92154 0.85067 1.00098 0.96403 0.92429 0.94103 0.92263 0.92571 0.90397 0.91384 0.91786 0.91340 0.93005 0.90142 0.91229 0.92714 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 7.49 71.98 0.54 -2.94 16 2 C 0.09 2.45 2.52 44.92 0.11 2.57 16 3 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16 4 C 0.07 2.21 4.93 86.30 0.43 2.64 16 5 N -0.67 -28.46 6.20 -517.95 -3.21 -31.67 16 6 C 0.18 8.77 4.51 85.56 0.39 9.15 16 7 C -0.52 -31.50 9.87 25.60 0.25 -31.24 16 8 H 0.03 2.35 8.06 -2.91 -0.02 2.33 16 9 C 0.01 0.37 5.47 84.66 0.46 0.83 16 10 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 11 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 14 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 15 N -0.54 -15.07 4.37 -874.96 -3.82 -18.89 16 16 C 0.07 1.50 4.86 85.27 0.41 1.91 16 17 C -0.12 -2.48 5.63 30.21 0.17 -2.31 16 18 C -0.11 -1.90 5.30 28.85 0.15 -1.74 16 19 C -0.12 -2.07 5.30 28.85 0.15 -1.92 16 20 C -0.15 -2.97 4.33 30.21 0.13 -2.84 16 21 C 0.07 1.84 4.53 85.26 0.39 2.23 16 22 H 0.06 1.27 6.03 -2.39 -0.01 1.26 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.21 5.52 -2.39 -0.01 1.20 16 25 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 2.01 6.45 -2.39 -0.02 2.00 16 27 H 0.33 14.18 8.72 -89.70 -0.78 13.40 16 28 H -0.02 -0.91 7.20 -2.39 -0.02 -0.93 16 29 H 0.02 0.89 7.57 -2.38 -0.02 0.88 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.04 0.81 5.08 -2.38 -0.01 0.80 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.42 7.08 -2.39 -0.02 1.41 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.06 0.98 7.52 -2.39 -0.02 0.96 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.02 7.52 -2.39 -0.02 1.00 16 39 H 0.08 1.48 4.04 -2.39 -0.01 1.47 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.60 5.73 -2.39 -0.01 1.59 16 42 H 0.05 1.54 6.59 -2.39 -0.02 1.52 16 Total: -1.00 -66.89 303.89 -1.11 -68.00 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.15 Total: 19.64 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.59 Total: -23.67 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -6.73 Total: -111.21 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -66.89 -1.11 -68.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380015943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.643 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds