Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46907 * 109.47483 * 180.02562 * 16 15 14 18 18 C 1.48532 * 110.99765 * 52.60062 * 17 16 15 19 19 C 1.54943 * 103.22529 * 159.72322 * 18 17 16 20 20 C 1.54590 * 102.91993 * 322.58912 * 19 18 17 21 21 C 1.47898 * 111.00299 * 170.00151 * 17 16 15 22 22 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 26 26 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 30 30 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 31 31 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 32 32 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 33 33 H 1.09002 * 109.47153 * 300.00216 * 16 15 14 34 34 H 1.09001 * 109.47289 * 60.00300 * 16 15 14 35 35 H 1.08993 * 110.67079 * 278.15779 * 18 17 16 36 36 H 1.09005 * 110.66584 * 41.28956 * 18 17 16 37 37 H 1.08995 * 110.72210 * 204.22707 * 19 18 17 38 38 H 1.09001 * 110.72262 * 80.94685 * 19 18 17 39 39 H 1.09006 * 110.30909 * 263.04086 * 20 19 18 40 40 H 1.09000 * 110.31234 * 140.87510 * 20 19 18 41 41 H 1.09003 * 109.91634 * 333.50448 * 21 17 16 42 42 H 1.08997 * 109.91807 * 94.59909 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 2.6610 0.4201 4.7694 16 6 3.1730 -0.3358 5.9971 17 7 3.2358 0.5793 7.1447 18 6 1.9374 1.2723 7.3444 19 6 2.0098 1.7428 8.8189 20 6 2.7348 0.5713 9.5203 21 6 3.4954 -0.1603 8.3989 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7081 1.1608 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.3380 1.2432 4.5406 32 1 1.6659 0.8145 4.9750 33 1 2.4957 -1.1587 6.2258 34 1 4.1681 -0.7305 5.7920 35 1 1.8494 2.1258 6.6722 36 1 1.1065 0.5814 7.2015 37 1 1.0096 1.8790 9.2299 38 1 2.5907 2.6614 8.9026 39 1 2.0106 -0.0978 9.9852 40 1 3.4334 0.9508 10.2660 41 1 3.1303 -1.1834 8.3089 42 1 4.5641 -0.1651 8.6128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380221923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -16.868217 kcal Electronic energy + Delta-G solvation = -17024.237059 eV Core-core repulsion = 14424.117435 eV Total energy + Delta-G solvation = -2600.119624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.17569 -36.43125 -34.49854 -32.59475 -30.99123 -29.16641 -28.37668 -25.89891 -25.04185 -22.78164 -21.35054 -20.84341 -20.31145 -19.61570 -16.49647 -16.27253 -15.93938 -15.48170 -14.82993 -14.32023 -14.18082 -13.65629 -13.33634 -13.07500 -12.95954 -12.42805 -12.09361 -11.90810 -11.63034 -11.41518 -11.34500 -11.20970 -11.04434 -10.91897 -10.82935 -10.67569 -10.61903 -10.38780 -10.13959 -10.05819 -9.76178 -8.79814 -8.57126 -8.44878 -7.21499 -6.00334 -4.06855 3.32466 3.36633 3.39525 3.82331 4.40252 4.42878 4.47991 4.71098 4.97911 5.05232 5.08940 5.27718 5.29250 5.33547 5.45466 5.50357 5.54123 5.58577 5.63236 5.75122 5.82218 5.87271 5.91104 5.96883 6.09517 6.22281 6.28712 6.59566 6.65663 6.73698 6.91141 6.92919 7.17360 7.27366 7.54821 7.80456 7.93540 8.30616 8.43813 8.72244 9.04398 9.58955 11.06054 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.064483 B = 0.003233 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.118677 B = 8657.622316 C = 8915.225505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.691 5.691 13 C 0.062 3.938 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.048 3.952 17 N -0.520 5.520 18 C 0.033 3.967 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.034 3.966 22 H 0.031 0.969 23 H 0.003 0.997 24 H 0.080 0.920 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 0.159 20.929 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.068 4.068 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.080 4.080 17 N -0.244 5.244 18 C -0.095 4.095 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.094 4.094 22 H 0.050 0.950 23 H 0.022 0.978 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.630 0.397 20.823 20.992 hybrid contribution 0.409 -0.532 -0.981 1.189 sum 3.040 -0.136 19.842 20.074 Atomic orbital electron populations 1.21710 0.97979 0.99262 0.99278 1.19090 0.92581 0.92306 0.85697 0.98256 1.21252 1.31472 1.12494 0.90545 0.92288 1.24932 0.95070 0.95010 0.99049 1.69893 1.36617 1.22926 1.23535 0.86576 0.79065 0.79779 0.82058 1.20196 1.21294 1.20326 1.60724 1.31966 1.33338 1.06197 1.21873 0.99499 0.94142 0.91321 1.21533 1.01217 0.98386 0.94087 1.21618 1.01291 0.98950 0.93670 1.22350 1.01076 0.93823 0.90741 1.64817 1.30065 1.26797 1.02757 1.23256 0.90782 0.98790 0.96677 1.22497 1.00416 0.98530 0.94898 1.22397 0.99265 0.97489 0.97808 1.22873 1.00888 0.95955 0.89705 0.95030 0.97785 0.90140 0.92885 0.85416 0.96470 0.92116 0.91667 0.92400 0.91306 0.92006 0.94712 0.90655 0.89752 0.93633 0.91156 0.90768 0.91651 0.91113 0.93857 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 9.19 37.15 0.34 -2.85 16 2 C 0.21 5.53 2.60 -68.87 -0.18 5.35 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.59 8.59 -34.44 -0.30 -14.88 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.93 11.32 55.43 0.63 -25.30 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.69 -15.30 6.30 -107.96 -0.68 -15.98 16 13 C 0.06 1.14 5.48 -3.83 -0.02 1.12 16 14 C -0.11 -1.66 5.47 -26.74 -0.15 -1.81 16 15 C -0.12 -1.47 4.87 -26.74 -0.13 -1.60 16 16 C 0.05 0.54 5.03 -3.82 -0.02 0.53 16 17 N -0.52 -5.70 5.40 -230.45 -1.24 -6.95 16 18 C 0.03 0.32 5.10 -1.89 -0.01 0.31 16 19 C -0.13 -1.02 7.06 -24.87 -0.18 -1.19 16 20 C -0.13 -1.01 6.93 -25.38 -0.18 -1.18 16 21 C 0.03 0.31 6.70 -2.76 -0.02 0.29 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 24 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.33 7.07 8.22 -39.29 -0.32 6.75 16 27 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 28 H 0.06 1.15 7.44 -51.93 -0.39 0.77 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.77 6.79 -51.93 -0.35 0.42 16 33 H 0.03 0.39 7.81 -51.93 -0.41 -0.01 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 36 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.39 7.57 -51.93 -0.39 0.00 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -29.11 326.43 -10.28 -39.40 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.96 Total: 1.67 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.92 Total: -14.29 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -1.30 Total: -48.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.11 -10.28 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380221923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.528 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds