Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46907 * 109.47483 * 180.02562 * 16 15 14 18 18 C 1.48532 * 110.99765 * 52.60062 * 17 16 15 19 19 C 1.54943 * 103.22529 * 159.72322 * 18 17 16 20 20 C 1.54590 * 102.91993 * 322.58912 * 19 18 17 21 21 C 1.47898 * 111.00299 * 170.00151 * 17 16 15 22 22 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 26 26 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 30 30 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 31 31 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 32 32 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 33 33 H 1.09002 * 109.47153 * 300.00216 * 16 15 14 34 34 H 1.09001 * 109.47289 * 60.00300 * 16 15 14 35 35 H 1.08993 * 110.67079 * 278.15779 * 18 17 16 36 36 H 1.09005 * 110.66584 * 41.28956 * 18 17 16 37 37 H 1.08995 * 110.72210 * 204.22707 * 19 18 17 38 38 H 1.09001 * 110.72262 * 80.94685 * 19 18 17 39 39 H 1.09006 * 110.30909 * 263.04086 * 20 19 18 40 40 H 1.09000 * 110.31234 * 140.87510 * 20 19 18 41 41 H 1.09003 * 109.91634 * 333.50448 * 21 17 16 42 42 H 1.08997 * 109.91807 * 94.59909 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 2.6610 0.4201 4.7694 16 6 3.1730 -0.3358 5.9971 17 7 3.2358 0.5793 7.1447 18 6 1.9374 1.2723 7.3444 19 6 2.0098 1.7428 8.8189 20 6 2.7348 0.5713 9.5203 21 6 3.4954 -0.1603 8.3989 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7081 1.1608 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.3380 1.2432 4.5406 32 1 1.6659 0.8145 4.9750 33 1 2.4957 -1.1587 6.2258 34 1 4.1681 -0.7305 5.7920 35 1 1.8494 2.1258 6.6722 36 1 1.1065 0.5814 7.2015 37 1 1.0096 1.8790 9.2299 38 1 2.5907 2.6614 8.9026 39 1 2.0106 -0.0978 9.9852 40 1 3.4334 0.9508 10.2660 41 1 3.1303 -1.1834 8.3089 42 1 4.5641 -0.1651 8.6128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380221923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -35.746207 kcal Electronic energy + Delta-G solvation = -17025.055670 eV Core-core repulsion = 14424.117435 eV Total energy + Delta-G solvation = -2600.938235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.95527 -38.10595 -35.90497 -34.27288 -32.31314 -30.21448 -29.67412 -27.53622 -26.86264 -23.89413 -22.46580 -21.80103 -21.60551 -21.08218 -18.52040 -17.15368 -16.90683 -16.73749 -16.54336 -15.67702 -15.52836 -14.99048 -14.81742 -14.26825 -13.98248 -13.78340 -13.51546 -13.21172 -12.93335 -12.77596 -12.73402 -12.44345 -12.31715 -12.23824 -12.20703 -12.10456 -12.01152 -11.86939 -11.51710 -11.41746 -11.36900 -10.89677 -10.58068 -9.37947 -9.07527 -8.14455 -6.29438 1.42041 1.44440 1.52104 2.40933 3.00914 3.13803 3.57855 3.77117 3.80839 4.00796 4.06843 4.16588 4.34774 4.39459 4.45770 4.57781 4.61070 4.71245 4.74591 4.81774 4.83218 4.90766 4.97247 4.99452 5.03994 5.05940 5.08047 5.19420 5.21429 5.31790 5.35701 5.37799 5.49228 5.66138 5.84563 5.96597 6.09407 6.20467 6.46366 6.76703 6.99515 7.41217 8.91319 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.064483 B = 0.003233 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.118677 B = 8657.622316 C = 8915.225505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.034 1.034 4 C -0.542 4.542 5 H 0.061 0.939 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.689 5.689 13 C 0.063 3.937 14 C -0.100 4.100 15 C -0.107 4.107 16 C 0.054 3.946 17 N -0.535 5.535 18 C 0.028 3.972 19 C -0.123 4.123 20 C -0.128 4.128 21 C 0.030 3.970 22 H 0.028 0.972 23 H 0.020 0.980 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.333 0.667 27 H 0.009 0.991 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 -0.657 21.907 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.580 4.580 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.067 4.067 14 C -0.138 4.138 15 C -0.145 4.145 16 C -0.074 4.074 17 N -0.259 5.259 18 C -0.099 4.099 19 C -0.161 4.161 20 C -0.166 4.166 21 C -0.098 4.098 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.122 -0.424 21.828 22.054 hybrid contribution 0.254 -0.240 -1.242 1.290 sum 3.376 -0.664 20.586 20.872 Atomic orbital electron populations 1.21543 0.97773 0.98856 0.98992 1.18921 0.92775 0.90690 0.87116 1.01604 1.21592 1.31912 1.12827 0.91666 0.92129 1.25789 0.95118 0.95684 1.02193 1.70025 1.37386 1.24116 1.24318 0.85497 0.78755 0.78636 0.78048 1.19541 1.20837 1.19474 1.60659 1.32221 1.33569 1.05569 1.21938 0.99267 0.93910 0.91568 1.21392 1.01288 0.98253 0.92900 1.21491 1.01302 0.98314 0.93434 1.22239 1.01083 0.93704 0.90399 1.64807 1.30669 1.27106 1.03339 1.23293 0.90307 0.98445 0.97895 1.22502 1.01287 0.98619 0.93670 1.22406 0.99494 0.97276 0.97456 1.22948 1.01362 0.96059 0.89392 0.95284 0.96078 0.92391 0.92763 0.85020 0.97253 0.92711 0.91493 0.91719 0.91951 0.91959 0.94483 0.90496 0.90465 0.93881 0.89858 0.90852 0.90710 0.90057 0.93718 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 9.19 71.98 0.66 -5.22 16 2 C 0.21 11.34 2.60 44.16 0.11 11.45 16 3 H -0.03 -1.97 7.80 -2.39 -0.02 -1.99 16 4 C -0.54 -30.55 8.59 25.60 0.22 -30.33 16 5 H 0.06 3.32 7.62 -2.91 -0.02 3.29 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.78 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 N -0.69 -30.40 6.30 -495.47 -3.12 -33.52 16 13 C 0.06 2.31 5.48 86.30 0.47 2.79 16 14 C -0.10 -2.80 5.47 30.59 0.17 -2.64 16 15 C -0.11 -2.58 4.87 30.59 0.15 -2.43 16 16 C 0.05 1.15 5.03 86.30 0.43 1.58 16 17 N -0.53 -11.00 5.40 -883.00 -4.76 -15.77 16 18 C 0.03 0.53 5.10 86.65 0.44 0.97 16 19 C -0.12 -1.77 7.06 31.80 0.22 -1.55 16 20 C -0.13 -1.69 6.93 31.47 0.22 -1.47 16 21 C 0.03 0.50 6.70 86.45 0.58 1.08 16 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 24 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 25 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.33 14.18 8.22 -89.69 -0.74 13.44 16 27 H 0.01 0.36 8.06 -2.39 -0.02 0.34 16 28 H 0.05 2.07 7.44 -2.39 -0.02 2.05 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.50 6.79 -2.39 -0.02 1.48 16 33 H 0.04 0.77 7.81 -2.39 -0.02 0.75 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.52 7.66 -2.39 -0.02 1.50 16 36 H 0.04 0.82 8.00 -2.38 -0.02 0.80 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.72 7.57 -2.39 -0.02 0.71 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -61.20 326.43 -1.27 -62.47 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.22 Total: 19.31 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.13 Total: -24.69 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -7.64 Total: -103.07 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.20 -1.27 -62.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380221923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.725 kcal (2) G-P(sol) polarization free energy of solvation -61.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds