Wall clock time and date at job start Mon Mar 30 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46677 * 2 1 4 4 C 1.50702 * 109.47024 * 119.99824 * 2 1 3 5 5 H 1.07995 * 119.99994 * 85.92964 * 4 2 1 6 6 C 1.37876 * 119.99985 * 265.91875 * 4 2 1 7 7 N 1.31509 * 120.00139 * 177.75422 * 6 4 2 8 8 Si 1.86809 * 119.99978 * 357.75614 * 6 4 2 9 9 H 1.48494 * 109.46730 * 274.91886 * 8 6 4 10 10 H 1.48496 * 109.46978 * 34.91866 * 8 6 4 11 11 H 1.48504 * 109.46724 * 154.91924 * 8 6 4 12 12 N 1.46894 * 109.47136 * 240.00210 * 2 1 3 13 13 C 1.46900 * 111.00081 * 84.99931 * 12 2 1 14 14 C 1.53002 * 109.47090 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.46965 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46819 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.46945 * 180.02562 * 16 15 14 18 18 C 1.48537 * 111.00357 * 52.59980 * 17 16 15 19 19 C 1.54938 * 103.22694 * 159.72037 * 18 17 16 20 20 C 1.54592 * 102.92202 * 322.58799 * 19 18 17 21 21 C 1.47901 * 111.00162 * 169.99708 * 17 16 15 22 22 H 1.08991 * 109.47196 * 295.76665 * 1 2 3 23 23 H 1.08995 * 109.47287 * 55.77515 * 1 2 3 24 24 H 1.09004 * 109.46464 * 175.76992 * 1 2 3 25 25 H 0.97003 * 120.00492 * 180.02562 * 7 6 4 26 26 H 1.00894 * 111.00429 * 321.04230 * 12 2 1 27 27 H 1.09003 * 109.47104 * 299.99368 * 13 12 2 28 28 H 1.09000 * 109.47524 * 59.99572 * 13 12 2 29 29 H 1.08992 * 109.47560 * 299.99823 * 14 13 12 30 30 H 1.08999 * 109.46989 * 60.00113 * 14 13 12 31 31 H 1.09003 * 109.47292 * 299.99688 * 15 14 13 32 32 H 1.09000 * 109.47460 * 59.99969 * 15 14 13 33 33 H 1.09005 * 109.47138 * 299.99632 * 16 15 14 34 34 H 1.08999 * 109.47359 * 60.00129 * 16 15 14 35 35 H 1.09000 * 110.66511 * 278.15680 * 18 17 16 36 36 H 1.08994 * 110.66483 * 41.28465 * 18 17 16 37 37 H 1.08997 * 110.71956 * 204.22676 * 19 18 17 38 38 H 1.09000 * 110.71901 * 80.94886 * 19 18 17 39 39 H 1.09002 * 110.30841 * 263.04113 * 20 19 18 40 40 H 1.08996 * 110.30851 * 140.87534 * 20 19 18 41 41 H 1.09001 * 109.91700 * 333.50798 * 21 17 16 42 42 H 1.09003 * 109.92067 * 94.60282 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1497 -1.7839 1.2241 6 6 2.3423 0.0103 2.3643 7 7 2.7384 -0.6135 3.4522 8 14 2.1994 1.8729 2.3553 9 1 3.4498 2.4625 1.8132 10 1 1.0518 2.2771 1.5040 11 1 1.9830 2.3594 3.7416 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2227 -2.3468 14 6 2.5963 -0.5328 -3.5741 15 6 2.6610 0.4202 -4.7694 16 6 3.1742 -0.3354 -5.9968 17 7 3.2370 0.5797 -7.1443 18 6 4.0075 1.8041 -6.8072 19 6 4.4141 2.3603 -8.1950 20 6 4.7118 1.0791 -9.0072 21 6 3.9481 -0.0439 -8.2813 22 1 -0.3633 0.4467 0.9254 23 1 -0.3633 0.5780 -0.8497 24 1 -0.3632 -1.0249 -0.0758 25 1 2.9561 -0.1066 4.2500 26 1 1.4497 -1.4978 -1.4100 27 1 1.0870 0.6163 -2.5525 28 1 2.7588 1.0464 -2.1182 29 1 3.5917 -0.9261 -3.3683 30 1 1.9202 -1.3566 -3.8030 31 1 1.6653 0.8132 -4.9752 32 1 3.3368 1.2444 -4.5408 33 1 4.1699 -0.7287 -5.7914 34 1 2.4981 -1.1593 -6.2253 35 1 3.3801 2.5190 -6.2749 36 1 4.8905 1.5533 -6.2195 37 1 5.3056 2.9822 -8.1150 38 1 3.5919 2.9186 -8.6427 39 1 5.7817 0.8707 -9.0065 40 1 4.3470 1.1855 -10.0288 41 1 4.6497 -0.7932 -7.9146 42 1 3.2309 -0.5073 -8.9588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380221925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:23 Heat of formation + Delta-G solvation = -14.427759 kcal Electronic energy + Delta-G solvation = -17099.050649 eV Core-core repulsion = 14499.036850 eV Total energy + Delta-G solvation = -2600.013798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21074 -36.68918 -34.59808 -32.48800 -31.30477 -29.30634 -28.78521 -25.91538 -25.12794 -22.82757 -21.41522 -20.87934 -20.43948 -19.81824 -16.90634 -16.30397 -16.04111 -15.54262 -14.63103 -14.44495 -14.33989 -13.76070 -13.31741 -13.08595 -12.98607 -12.50055 -12.25017 -12.17973 -11.83671 -11.67495 -11.57996 -11.41348 -11.17993 -11.05223 -10.91345 -10.88356 -10.77825 -10.58673 -10.32921 -9.97995 -9.69233 -9.08667 -8.60845 -8.51366 -7.31330 -6.01999 -3.99047 3.30568 3.38270 3.38994 3.78565 4.38070 4.44933 4.44969 4.67963 4.88178 5.00481 5.04869 5.13764 5.25338 5.34597 5.41777 5.45787 5.51588 5.54143 5.58022 5.71676 5.75973 5.81767 5.82781 5.92789 5.98602 6.11924 6.14488 6.26095 6.40070 6.51016 6.55703 6.65016 6.69726 6.85837 6.87993 7.16818 7.74909 8.02023 8.43426 8.71677 9.05870 9.60915 11.11852 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041242 B = 0.003663 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.749692 B = 7643.161497 C = 7894.956635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.035 0.965 4 C -0.491 4.491 5 H 0.076 0.924 6 C 0.068 3.932 7 N -0.903 5.903 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.268 1.268 11 H -0.289 1.289 12 N -0.677 5.677 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.048 3.952 17 N -0.520 5.520 18 C 0.032 3.968 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.034 3.966 22 H 0.051 0.949 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.327 0.673 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 4.367 -23.102 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.094 0.906 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.215 1.215 12 N -0.306 5.306 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.080 4.080 17 N -0.244 5.244 18 C -0.095 4.095 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.094 4.094 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.030 4.592 -22.867 23.412 hybrid contribution -0.172 0.848 0.191 0.886 sum 1.858 5.440 -22.676 23.393 Atomic orbital electron populations 1.22659 1.01069 0.99960 0.99323 1.19630 0.89305 0.94597 0.89327 0.94751 1.20894 1.42584 0.95895 0.93620 0.90618 1.24975 0.94770 0.98019 0.95520 1.69889 1.46248 1.35673 1.02333 0.86907 0.78965 0.86797 0.77012 1.20226 1.19277 1.21517 1.60879 1.57918 1.08897 1.02926 1.21947 0.98180 0.96135 0.91023 1.21528 1.02172 0.98002 0.93564 1.21623 1.01860 0.98617 0.93461 1.22347 0.99996 0.95475 0.90207 1.64819 1.47706 1.05724 1.06201 1.23258 0.96520 0.92992 0.96774 1.22495 1.01361 0.97119 0.95361 1.22396 0.99964 0.94943 0.99658 1.22874 0.96400 0.96419 0.93731 0.92986 0.96183 0.93538 0.92722 0.85632 0.96534 0.92016 0.91304 0.92343 0.91394 0.91953 0.94602 0.90640 0.89814 0.93573 0.91141 0.90793 0.91613 0.91106 0.93801 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 9.12 37.16 0.34 -3.33 16 2 C 0.18 4.32 2.17 -68.86 -0.15 4.17 16 3 H 0.03 0.85 5.12 -51.93 -0.27 0.59 16 4 C -0.49 -14.07 9.20 -34.44 -0.32 -14.39 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 8 Si 0.88 21.88 26.72 -169.99 -4.54 17.34 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.27 -6.39 6.87 56.52 0.39 -6.00 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.68 -14.19 6.23 -107.95 -0.67 -14.86 16 13 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 14 C -0.11 -1.58 5.48 -26.73 -0.15 -1.73 16 15 C -0.12 -1.40 4.87 -26.73 -0.13 -1.53 16 16 C 0.05 0.52 5.03 -3.82 -0.02 0.50 16 17 N -0.52 -5.51 5.40 -230.45 -1.24 -6.75 16 18 C 0.03 0.31 5.10 -1.90 -0.01 0.30 16 19 C -0.13 -0.99 7.06 -24.87 -0.18 -1.17 16 20 C -0.13 -0.99 6.93 -25.38 -0.18 -1.16 16 21 C 0.03 0.30 6.69 -2.76 -0.02 0.28 16 22 H 0.05 1.16 7.91 -51.93 -0.41 0.75 16 23 H 0.02 0.37 7.56 -51.93 -0.39 -0.02 16 24 H 0.05 0.95 8.06 -51.93 -0.42 0.53 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.33 6.39 8.42 -39.29 -0.33 6.06 16 27 H 0.02 0.28 7.52 -51.93 -0.39 -0.11 16 28 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.74 6.79 -51.93 -0.35 0.39 16 33 H 0.04 0.39 7.81 -51.93 -0.41 -0.01 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 36 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.39 7.57 -51.93 -0.39 -0.01 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -30.49 326.11 -9.66 -40.15 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.97 Total: 1.63 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.92 Total: -15.19 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.14 Total: -48.85 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.54 Total: 17.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.49 -9.66 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380221925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.724 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds