Wall clock time and date at job start Mon Mar 30 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46677 * 2 1 4 4 C 1.50702 * 109.47024 * 119.99824 * 2 1 3 5 5 H 1.07995 * 119.99994 * 85.92964 * 4 2 1 6 6 C 1.37876 * 119.99985 * 265.91875 * 4 2 1 7 7 N 1.31509 * 120.00139 * 177.75422 * 6 4 2 8 8 Si 1.86809 * 119.99978 * 357.75614 * 6 4 2 9 9 H 1.48494 * 109.46730 * 274.91886 * 8 6 4 10 10 H 1.48496 * 109.46978 * 34.91866 * 8 6 4 11 11 H 1.48504 * 109.46724 * 154.91924 * 8 6 4 12 12 N 1.46894 * 109.47136 * 240.00210 * 2 1 3 13 13 C 1.46900 * 111.00081 * 84.99931 * 12 2 1 14 14 C 1.53002 * 109.47090 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.46965 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46819 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.46945 * 180.02562 * 16 15 14 18 18 C 1.48537 * 111.00357 * 52.59980 * 17 16 15 19 19 C 1.54938 * 103.22694 * 159.72037 * 18 17 16 20 20 C 1.54592 * 102.92202 * 322.58799 * 19 18 17 21 21 C 1.47901 * 111.00162 * 169.99708 * 17 16 15 22 22 H 1.08991 * 109.47196 * 295.76665 * 1 2 3 23 23 H 1.08995 * 109.47287 * 55.77515 * 1 2 3 24 24 H 1.09004 * 109.46464 * 175.76992 * 1 2 3 25 25 H 0.97003 * 120.00492 * 180.02562 * 7 6 4 26 26 H 1.00894 * 111.00429 * 321.04230 * 12 2 1 27 27 H 1.09003 * 109.47104 * 299.99368 * 13 12 2 28 28 H 1.09000 * 109.47524 * 59.99572 * 13 12 2 29 29 H 1.08992 * 109.47560 * 299.99823 * 14 13 12 30 30 H 1.08999 * 109.46989 * 60.00113 * 14 13 12 31 31 H 1.09003 * 109.47292 * 299.99688 * 15 14 13 32 32 H 1.09000 * 109.47460 * 59.99969 * 15 14 13 33 33 H 1.09005 * 109.47138 * 299.99632 * 16 15 14 34 34 H 1.08999 * 109.47359 * 60.00129 * 16 15 14 35 35 H 1.09000 * 110.66511 * 278.15680 * 18 17 16 36 36 H 1.08994 * 110.66483 * 41.28465 * 18 17 16 37 37 H 1.08997 * 110.71956 * 204.22676 * 19 18 17 38 38 H 1.09000 * 110.71901 * 80.94886 * 19 18 17 39 39 H 1.09002 * 110.30841 * 263.04113 * 20 19 18 40 40 H 1.08996 * 110.30851 * 140.87534 * 20 19 18 41 41 H 1.09001 * 109.91700 * 333.50798 * 21 17 16 42 42 H 1.09003 * 109.92067 * 94.60282 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1497 -1.7839 1.2241 6 6 2.3423 0.0103 2.3643 7 7 2.7384 -0.6135 3.4522 8 14 2.1994 1.8729 2.3553 9 1 3.4498 2.4625 1.8132 10 1 1.0518 2.2771 1.5040 11 1 1.9830 2.3594 3.7416 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2227 -2.3468 14 6 2.5963 -0.5328 -3.5741 15 6 2.6610 0.4202 -4.7694 16 6 3.1742 -0.3354 -5.9968 17 7 3.2370 0.5797 -7.1443 18 6 4.0075 1.8041 -6.8072 19 6 4.4141 2.3603 -8.1950 20 6 4.7118 1.0791 -9.0072 21 6 3.9481 -0.0439 -8.2813 22 1 -0.3633 0.4467 0.9254 23 1 -0.3633 0.5780 -0.8497 24 1 -0.3632 -1.0249 -0.0758 25 1 2.9561 -0.1066 4.2500 26 1 1.4497 -1.4978 -1.4100 27 1 1.0870 0.6163 -2.5525 28 1 2.7588 1.0464 -2.1182 29 1 3.5917 -0.9261 -3.3683 30 1 1.9202 -1.3566 -3.8030 31 1 1.6653 0.8132 -4.9752 32 1 3.3368 1.2444 -4.5408 33 1 4.1699 -0.7287 -5.7914 34 1 2.4981 -1.1593 -6.2253 35 1 3.3801 2.5190 -6.2749 36 1 4.8905 1.5533 -6.2195 37 1 5.3056 2.9822 -8.1150 38 1 3.5919 2.9186 -8.6427 39 1 5.7817 0.8707 -9.0065 40 1 4.3470 1.1855 -10.0288 41 1 4.6497 -0.7932 -7.9146 42 1 3.2309 -0.5073 -8.9588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380221925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:22 Heat of formation + Delta-G solvation = -35.723685 kcal Electronic energy + Delta-G solvation = -17099.974109 eV Core-core repulsion = 14499.036850 eV Total energy + Delta-G solvation = -2600.937259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95800 -38.25628 -35.85056 -34.31760 -32.61883 -30.45941 -29.72279 -27.28772 -27.00074 -23.84447 -22.47026 -21.91566 -21.64600 -21.08259 -19.02216 -17.07044 -16.90068 -16.63252 -16.52748 -15.84486 -15.42896 -15.04536 -14.64668 -14.43818 -14.08381 -13.95945 -13.62885 -13.54844 -13.05481 -12.92443 -12.80744 -12.60100 -12.35941 -12.28864 -12.07822 -12.01477 -11.92717 -11.77927 -11.56615 -11.46913 -11.36988 -11.11905 -10.71270 -9.39044 -8.97256 -8.26297 -6.28514 1.34095 1.34729 1.45304 2.35101 2.97693 3.07688 3.57316 3.76482 3.80342 4.01327 4.06467 4.16516 4.33954 4.36621 4.44811 4.46944 4.56703 4.60961 4.69394 4.70513 4.79815 4.80263 4.82220 4.90619 4.96834 4.99826 5.02275 5.06953 5.10345 5.19527 5.31274 5.36478 5.40703 5.46231 5.68740 5.95517 6.07522 6.08930 6.68694 6.77278 6.81577 7.35741 8.91407 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041242 B = 0.003663 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.749692 B = 7643.161497 C = 7894.956635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.182 3.818 3 H 0.032 0.968 4 C -0.498 4.498 5 H 0.031 0.969 6 C 0.007 3.993 7 N -0.953 5.953 8 Si 0.943 3.057 9 H -0.270 1.270 10 H -0.245 1.245 11 H -0.285 1.285 12 N -0.692 5.692 13 C 0.059 3.941 14 C -0.104 4.104 15 C -0.107 4.107 16 C 0.052 3.948 17 N -0.532 5.532 18 C 0.028 3.972 19 C -0.123 4.123 20 C -0.129 4.129 21 C 0.030 3.970 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.265 0.735 26 H 0.334 0.666 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 6.031 -25.295 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.049 0.951 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.767 3.233 9 H -0.196 1.196 10 H -0.169 1.169 11 H -0.211 1.211 12 N -0.323 5.323 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.145 4.145 16 C -0.076 4.076 17 N -0.256 5.256 18 C -0.100 4.100 19 C -0.161 4.161 20 C -0.167 4.167 21 C -0.098 4.098 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.152 0.848 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.510 6.249 -25.097 25.907 hybrid contribution 0.004 0.218 0.828 0.857 sum 1.514 6.467 -24.268 25.161 Atomic orbital electron populations 1.22503 0.98880 1.00822 1.00124 1.19462 0.90820 0.93799 0.88632 0.94981 1.21201 1.42292 0.94247 0.95973 0.95053 1.25874 0.94572 1.03527 0.94965 1.70049 1.48176 1.37898 1.03280 0.85819 0.79855 0.80107 0.77529 1.19590 1.16886 1.21142 1.60655 1.58260 1.09847 1.03520 1.21998 0.98800 0.95580 0.90673 1.21411 1.01598 0.98296 0.92902 1.21495 1.01941 0.98085 0.92971 1.22258 0.99802 0.95489 0.90058 1.64821 1.48452 1.06023 1.06351 1.23300 0.96152 0.92724 0.97800 1.22501 1.01899 0.97420 0.94254 1.22406 1.00271 0.94062 0.99953 1.22949 0.96567 0.96922 0.93366 0.93978 0.93117 0.93127 0.92613 0.84820 0.95330 0.92846 0.92255 0.91445 0.91301 0.92066 0.94921 0.90396 0.90174 0.94111 0.89984 0.90696 0.90890 0.90012 0.93915 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.69 9.12 71.98 0.66 -6.04 16 2 C 0.18 8.53 2.17 44.17 0.10 8.63 16 3 H 0.03 1.52 5.12 -2.39 -0.01 1.51 16 4 C -0.50 -29.05 9.20 25.60 0.24 -28.81 16 5 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 6 C 0.01 0.42 5.47 84.66 0.46 0.88 16 7 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 8 Si 0.94 44.83 26.72 68.60 1.83 46.67 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.25 -10.68 6.87 99.48 0.68 -10.00 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 N -0.69 -28.31 6.23 -495.44 -3.09 -31.40 16 13 C 0.06 1.91 5.48 86.30 0.47 2.39 16 14 C -0.10 -2.69 5.48 30.60 0.17 -2.53 16 15 C -0.11 -2.34 4.87 30.60 0.15 -2.19 16 16 C 0.05 1.05 5.03 86.30 0.43 1.49 16 17 N -0.53 -10.37 5.40 -883.00 -4.76 -15.13 16 18 C 0.03 0.49 5.10 86.65 0.44 0.94 16 19 C -0.12 -1.69 7.06 31.80 0.22 -1.46 16 20 C -0.13 -1.65 6.93 31.47 0.22 -1.43 16 21 C 0.03 0.48 6.69 86.44 0.58 1.06 16 22 H 0.04 1.78 7.91 -2.39 -0.02 1.76 16 23 H 0.05 1.75 7.56 -2.39 -0.02 1.74 16 24 H 0.05 1.99 8.06 -2.38 -0.02 1.97 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.33 12.73 8.42 -89.70 -0.76 11.98 16 27 H 0.03 0.87 7.52 -2.39 -0.02 0.85 16 28 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.36 6.79 -2.39 -0.02 1.34 16 33 H 0.03 0.68 7.81 -2.38 -0.02 0.66 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 36 H 0.04 0.76 8.00 -2.39 -0.02 0.74 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.04 0.69 7.57 -2.39 -0.02 0.67 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.84 326.11 -1.40 -67.25 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.18 Total: 20.10 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.14 Total: -27.08 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -7.55 Total: -106.93 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.83 Total: 46.67 kcal Total: -65.84 -1.40 -67.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380221925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.524 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds