Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47030 * 2 1 4 4 C 1.50698 * 109.46907 * 240.00267 * 2 1 3 5 5 H 1.08003 * 119.99639 * 239.99674 * 4 2 1 6 6 C 1.37875 * 120.00142 * 60.00067 * 4 2 1 7 7 N 1.31513 * 120.00280 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99839 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47236 * 89.99981 * 8 6 4 10 10 H 1.48497 * 109.47175 * 209.99748 * 8 6 4 11 11 H 1.48501 * 109.47448 * 329.99742 * 8 6 4 12 12 N 1.46895 * 109.47033 * 119.99875 * 2 1 3 13 13 C 1.46894 * 111.00359 * 273.69521 * 12 2 1 14 14 H 1.09003 * 109.46927 * 33.50738 * 13 12 2 15 15 C 1.53001 * 109.47198 * 153.50245 * 13 12 2 16 16 C 1.53006 * 109.47106 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46934 * 300.00221 * 16 15 13 18 18 C 1.52990 * 109.47289 * 60.00277 * 17 16 15 19 19 H 1.08999 * 109.47801 * 59.99580 * 18 17 16 20 20 N 1.46901 * 109.47150 * 179.97438 * 18 17 16 21 21 C 1.46899 * 110.99802 * 294.99279 * 20 18 17 22 22 C 1.46897 * 111.00057 * 58.95016 * 20 18 17 23 23 C 1.52998 * 109.47456 * 273.50683 * 13 12 2 24 24 H 1.09001 * 109.47215 * 53.98673 * 1 2 3 25 25 H 1.08997 * 109.47056 * 173.98737 * 1 2 3 26 26 H 1.08998 * 109.47097 * 293.98222 * 1 2 3 27 27 H 0.96999 * 120.00362 * 180.02562 * 7 6 4 28 28 H 1.00904 * 110.99880 * 149.74480 * 12 2 1 29 29 H 1.09007 * 109.47205 * 300.00443 * 15 13 12 30 30 H 1.09003 * 109.46779 * 60.00403 * 15 13 12 31 31 H 1.09000 * 109.46898 * 180.02562 * 16 15 13 32 32 H 1.08998 * 109.46742 * 60.00336 * 16 15 13 33 33 H 1.08999 * 109.47042 * 299.99392 * 17 16 15 34 34 H 1.09002 * 109.46457 * 180.02562 * 17 16 15 35 35 H 1.09010 * 109.46640 * 60.00232 * 21 20 18 36 36 H 1.08997 * 109.47532 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.47839 * 300.00667 * 21 20 18 38 38 H 1.08996 * 109.47269 * 60.00306 * 22 20 18 39 39 H 1.09003 * 109.46967 * 180.02562 * 22 20 18 40 40 H 1.08998 * 109.46948 * 300.00018 * 22 20 18 41 41 H 1.09005 * 109.46639 * 299.99691 * 23 13 12 42 42 H 1.09000 * 109.47291 * 59.99854 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7121 12 7 2.0197 -0.6924 1.1994 13 6 2.1118 0.2298 2.3390 14 1 1.3155 0.9711 2.2718 15 6 1.9682 -0.5560 3.6440 16 6 2.0635 0.4047 4.8310 17 6 3.4205 1.1110 4.8077 18 6 3.5641 1.8968 3.5029 19 1 2.7677 2.6378 3.4353 20 7 4.8668 2.5754 3.4808 21 6 4.9484 3.5928 4.5373 22 6 5.9664 1.6080 3.5954 23 6 3.4691 0.9357 2.3155 24 1 -0.3634 0.6042 -0.8313 25 1 -0.3633 -1.0220 -0.1076 26 1 -0.3633 0.4177 0.9389 27 1 0.7081 1.1610 -3.4844 28 1 2.9074 -1.1383 1.0224 29 1 1.0012 -1.0589 3.6607 30 1 2.7645 -1.2973 3.7112 31 1 1.9616 -0.1552 5.7606 32 1 1.2670 1.1457 4.7635 33 1 4.2170 0.3699 4.8752 34 1 3.4886 1.7950 5.6536 35 1 4.8181 3.1179 5.5098 36 1 5.9229 4.0794 4.4987 37 1 4.1648 4.3355 4.3878 38 1 5.9229 0.9080 2.7611 39 1 6.9192 2.1371 3.5769 40 1 5.8729 1.0613 4.5337 41 1 4.2653 0.1943 2.3828 42 1 3.5714 1.4955 1.3859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380230527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -10.186016 kcal Electronic energy + Delta-G solvation = -18364.638931 eV Core-core repulsion = 15764.809069 eV Total energy + Delta-G solvation = -2599.829862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46818 -36.46299 -34.43444 -32.25612 -29.90633 -29.24993 -27.62710 -26.55188 -25.06200 -24.04347 -22.12211 -20.48497 -19.57507 -19.22393 -16.55251 -15.73727 -15.18304 -14.84451 -14.58408 -14.37171 -14.04585 -13.65967 -13.36437 -12.97008 -12.75144 -12.18283 -12.05018 -11.94676 -11.74429 -11.56716 -11.35421 -10.96114 -10.88921 -10.77728 -10.68509 -10.42434 -10.38033 -10.14615 -10.04464 -10.03917 -9.57249 -8.76343 -8.44118 -8.16775 -7.17614 -5.98325 -4.03922 3.32645 3.38906 3.41866 4.03099 4.43718 4.81934 4.93167 5.11558 5.22303 5.24998 5.33454 5.36308 5.46206 5.53271 5.57405 5.68523 5.70922 5.80286 5.83131 5.90866 5.93335 6.03631 6.15886 6.27891 6.33490 6.38941 6.50815 6.75504 6.80294 6.96411 7.12299 7.16477 7.20467 7.30777 7.59612 7.83548 7.96140 8.30282 8.46481 8.74568 9.07534 9.61765 11.08461 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.005954 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.865689 B = 4701.720490 C = 5168.755319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.211 3.789 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.091 3.909 14 H 0.069 0.931 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.150 4.150 18 C 0.088 3.912 19 H 0.079 0.921 20 N -0.541 5.541 21 C 0.022 3.978 22 C 0.018 3.982 23 C -0.135 4.135 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.004 0.996 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 2.373 14.430 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.313 5.313 13 C -0.020 4.020 14 H 0.087 0.913 15 C -0.144 4.144 16 C -0.152 4.152 17 C -0.189 4.189 18 C -0.021 4.021 19 H 0.098 0.902 20 N -0.263 5.263 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.175 4.175 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.237 2.503 13.971 15.129 hybrid contribution 1.037 -0.263 -0.330 1.119 sum 6.274 2.240 13.641 15.181 Atomic orbital electron populations 1.21702 0.98054 0.99939 0.98266 1.19099 0.92380 0.92532 0.85590 0.97876 1.21272 1.31413 1.12399 0.90573 0.92372 1.24909 0.95089 0.94965 0.98982 1.69911 1.36716 1.22872 1.23363 0.86551 0.79186 0.79330 0.82628 1.20685 1.21316 1.19990 1.60827 1.32651 1.31284 1.06512 1.21489 0.94964 0.93738 0.91851 0.91290 1.21536 1.01960 0.97478 0.93415 1.21456 0.96581 0.98709 0.98427 1.22199 0.98545 0.99674 0.98465 1.21762 0.90600 0.95352 0.94346 0.90237 1.62240 1.02995 1.14745 1.46323 1.22387 1.02234 0.95404 0.92591 1.22452 0.93966 0.95878 1.00670 1.22370 0.99105 0.98080 0.97922 0.90618 0.95026 0.97696 0.93005 0.85299 0.91609 0.92614 0.92486 0.92145 0.91885 0.92570 0.95604 0.91813 0.91555 0.90819 0.91989 0.95472 0.92247 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.12 37.16 0.34 -2.73 16 2 C 0.21 5.38 2.41 -68.87 -0.17 5.21 16 3 H 0.00 0.10 7.23 -51.93 -0.38 -0.28 16 4 C -0.52 -14.32 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.74 11.39 55.43 0.63 -25.11 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -14.55 6.06 -100.96 -0.61 -15.16 16 13 C 0.09 1.62 2.25 -67.72 -0.15 1.46 16 14 H 0.07 1.33 7.20 -51.93 -0.37 0.96 16 15 C -0.11 -1.57 5.53 -26.73 -0.15 -1.72 16 16 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 17 C -0.15 -1.81 4.51 -26.74 -0.12 -1.93 16 18 C 0.09 1.23 2.23 -67.69 -0.15 1.08 16 19 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 20 N -0.54 -7.22 5.01 -243.15 -1.22 -8.44 16 21 C 0.02 0.24 9.31 60.06 0.56 0.80 16 22 C 0.02 0.22 8.82 60.06 0.53 0.75 16 23 C -0.14 -2.23 4.23 -26.70 -0.11 -2.34 16 24 H 0.08 2.07 6.25 -51.93 -0.32 1.74 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.00 0.09 7.49 -51.93 -0.39 -0.30 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.33 6.94 7.91 -39.29 -0.31 6.63 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.77 6.39 -51.93 -0.33 0.44 16 34 H 0.06 0.63 6.52 -51.93 -0.34 0.29 16 35 H 0.03 0.26 6.44 -51.92 -0.33 -0.08 16 36 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.94 6.33 -51.93 -0.33 0.62 16 39 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.03 0.30 6.28 -51.93 -0.33 -0.03 16 41 H 0.06 0.95 6.42 -51.93 -0.33 0.61 16 42 H 0.07 1.43 7.56 -51.93 -0.39 1.03 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -28.32 312.66 -8.97 -37.29 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.49 Total: 4.15 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 0.03 Total: -13.93 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -1.20 Total: -48.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.32 -8.97 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380230527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.102 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds