Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47030 * 2 1 4 4 C 1.50698 * 109.46907 * 240.00267 * 2 1 3 5 5 H 1.08003 * 119.99639 * 239.99674 * 4 2 1 6 6 C 1.37875 * 120.00142 * 60.00067 * 4 2 1 7 7 N 1.31513 * 120.00280 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99839 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47236 * 89.99981 * 8 6 4 10 10 H 1.48497 * 109.47175 * 209.99748 * 8 6 4 11 11 H 1.48501 * 109.47448 * 329.99742 * 8 6 4 12 12 N 1.46895 * 109.47033 * 119.99875 * 2 1 3 13 13 C 1.46894 * 111.00359 * 273.69521 * 12 2 1 14 14 H 1.09003 * 109.46927 * 33.50738 * 13 12 2 15 15 C 1.53001 * 109.47198 * 153.50245 * 13 12 2 16 16 C 1.53006 * 109.47106 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46934 * 300.00221 * 16 15 13 18 18 C 1.52990 * 109.47289 * 60.00277 * 17 16 15 19 19 H 1.08999 * 109.47801 * 59.99580 * 18 17 16 20 20 N 1.46901 * 109.47150 * 179.97438 * 18 17 16 21 21 C 1.46899 * 110.99802 * 294.99279 * 20 18 17 22 22 C 1.46897 * 111.00057 * 58.95016 * 20 18 17 23 23 C 1.52998 * 109.47456 * 273.50683 * 13 12 2 24 24 H 1.09001 * 109.47215 * 53.98673 * 1 2 3 25 25 H 1.08997 * 109.47056 * 173.98737 * 1 2 3 26 26 H 1.08998 * 109.47097 * 293.98222 * 1 2 3 27 27 H 0.96999 * 120.00362 * 180.02562 * 7 6 4 28 28 H 1.00904 * 110.99880 * 149.74480 * 12 2 1 29 29 H 1.09007 * 109.47205 * 300.00443 * 15 13 12 30 30 H 1.09003 * 109.46779 * 60.00403 * 15 13 12 31 31 H 1.09000 * 109.46898 * 180.02562 * 16 15 13 32 32 H 1.08998 * 109.46742 * 60.00336 * 16 15 13 33 33 H 1.08999 * 109.47042 * 299.99392 * 17 16 15 34 34 H 1.09002 * 109.46457 * 180.02562 * 17 16 15 35 35 H 1.09010 * 109.46640 * 60.00232 * 21 20 18 36 36 H 1.08997 * 109.47532 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.47839 * 300.00667 * 21 20 18 38 38 H 1.08996 * 109.47269 * 60.00306 * 22 20 18 39 39 H 1.09003 * 109.46967 * 180.02562 * 22 20 18 40 40 H 1.08998 * 109.46948 * 300.00018 * 22 20 18 41 41 H 1.09005 * 109.46639 * 299.99691 * 23 13 12 42 42 H 1.09000 * 109.47291 * 59.99854 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7121 12 7 2.0197 -0.6924 1.1994 13 6 2.1118 0.2298 2.3390 14 1 1.3155 0.9711 2.2718 15 6 1.9682 -0.5560 3.6440 16 6 2.0635 0.4047 4.8310 17 6 3.4205 1.1110 4.8077 18 6 3.5641 1.8968 3.5029 19 1 2.7677 2.6378 3.4353 20 7 4.8668 2.5754 3.4808 21 6 4.9484 3.5928 4.5373 22 6 5.9664 1.6080 3.5954 23 6 3.4691 0.9357 2.3155 24 1 -0.3634 0.6042 -0.8313 25 1 -0.3633 -1.0220 -0.1076 26 1 -0.3633 0.4177 0.9389 27 1 0.7081 1.1610 -3.4844 28 1 2.9074 -1.1383 1.0224 29 1 1.0012 -1.0589 3.6607 30 1 2.7645 -1.2973 3.7112 31 1 1.9616 -0.1552 5.7606 32 1 1.2670 1.1457 4.7635 33 1 4.2170 0.3699 4.8752 34 1 3.4886 1.7950 5.6536 35 1 4.8181 3.1179 5.5098 36 1 5.9229 4.0794 4.4987 37 1 4.1648 4.3355 4.3878 38 1 5.9229 0.9080 2.7611 39 1 6.9192 2.1371 3.5769 40 1 5.8729 1.0613 4.5337 41 1 4.2653 0.1943 2.3828 42 1 3.5714 1.4955 1.3859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380230527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -29.097140 kcal Electronic energy + Delta-G solvation = -18365.458979 eV Core-core repulsion = 15764.809069 eV Total energy + Delta-G solvation = -2600.649910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65742 -37.93632 -35.99096 -34.07027 -31.44025 -30.58268 -28.62575 -28.13208 -27.17507 -25.09168 -23.43097 -21.90831 -21.34982 -20.40480 -18.50660 -16.99214 -16.87996 -16.22897 -15.77008 -15.55567 -15.33315 -15.14720 -14.85637 -14.46674 -14.24096 -13.58436 -13.35336 -13.22642 -13.04021 -12.84487 -12.72043 -12.63118 -12.55887 -12.32290 -12.21433 -12.07214 -12.00309 -11.85713 -11.42455 -11.33862 -11.10221 -10.83377 -10.57015 -9.13934 -8.97052 -8.12522 -6.26104 1.41866 1.42542 1.52783 2.41815 3.03390 3.16453 3.54391 3.79040 3.93935 4.15019 4.20208 4.26582 4.37330 4.49046 4.52938 4.55357 4.62694 4.65300 4.71295 4.80541 4.85757 4.99117 5.01016 5.04422 5.09016 5.12915 5.16491 5.18428 5.27491 5.32500 5.42668 5.50341 5.57072 5.72943 5.88710 6.13309 6.18779 6.21798 6.51445 6.81916 7.04375 7.44238 8.93685 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.005954 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.865689 B = 4701.720490 C = 5168.755319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.218 3.782 3 H -0.031 1.031 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.682 5.682 13 C 0.091 3.909 14 H 0.048 0.952 15 C -0.097 4.097 16 C -0.108 4.108 17 C -0.140 4.140 18 C 0.094 3.906 19 H 0.068 0.932 20 N -0.564 5.564 21 C 0.023 3.977 22 C 0.020 3.980 23 C -0.123 4.123 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 1.747 16.044 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 H -0.014 1.014 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.020 4.020 14 H 0.067 0.933 15 C -0.135 4.135 16 C -0.146 4.146 17 C -0.179 4.179 18 C -0.015 4.015 19 H 0.086 0.914 20 N -0.287 5.287 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.217 1.876 15.613 16.909 hybrid contribution 0.744 -0.023 -0.813 1.102 sum 6.961 1.853 14.800 16.460 Atomic orbital electron populations 1.21520 0.97991 0.99068 0.98162 1.18856 0.92376 0.90815 0.86962 1.01365 1.21604 1.31636 1.12575 0.91739 0.92383 1.25742 0.95213 0.95652 1.02073 1.70044 1.37595 1.24099 1.24086 0.85501 0.78873 0.78202 0.78704 1.20051 1.20954 1.19191 1.60783 1.32744 1.31715 1.05821 1.21562 0.95032 0.93358 0.92059 0.93326 1.21449 1.01877 0.97729 0.92474 1.21432 0.96796 0.98320 0.98067 1.22114 0.98440 0.99754 0.97589 1.21596 0.91028 0.94724 0.94178 0.91403 1.62178 1.02819 1.15583 1.48097 1.22427 1.02948 0.94756 0.92337 1.22449 0.94074 0.95647 1.00628 1.22168 0.98366 0.98283 0.97460 0.92979 0.95548 0.95978 0.92920 0.85228 0.92186 0.91948 0.89982 0.92191 0.91363 0.90648 0.94236 0.90617 0.91714 0.92415 0.90675 0.94116 0.91652 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 9.12 71.98 0.66 -4.99 16 2 C 0.22 11.48 2.41 44.17 0.11 11.59 16 3 H -0.03 -1.83 7.23 -2.39 -0.02 -1.85 16 4 C -0.54 -30.26 8.59 25.60 0.22 -30.04 16 5 H 0.06 3.20 7.60 -2.91 -0.02 3.17 16 6 C 0.01 0.70 5.30 84.65 0.45 1.14 16 7 N -0.92 -54.35 11.39 21.45 0.24 -54.11 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.68 -29.53 6.06 -473.33 -2.87 -32.40 16 13 C 0.09 3.26 2.25 44.92 0.10 3.36 16 14 H 0.05 1.93 7.20 -2.39 -0.02 1.92 16 15 C -0.10 -2.74 5.53 30.60 0.17 -2.57 16 16 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 17 C -0.14 -2.99 4.51 30.59 0.14 -2.85 16 18 C 0.09 2.54 2.23 44.93 0.10 2.64 16 19 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 20 N -0.56 -14.36 5.01 -923.20 -4.62 -18.99 16 21 C 0.02 0.45 9.31 127.69 1.19 1.64 16 22 C 0.02 0.44 8.82 127.69 1.13 1.57 16 23 C -0.12 -4.14 4.23 30.61 0.13 -4.01 16 24 H 0.05 2.93 6.25 -2.39 -0.01 2.92 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.02 1.01 7.49 -2.39 -0.02 0.99 16 27 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.33 14.12 7.91 -89.69 -0.71 13.41 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.43 6.39 -2.39 -0.02 1.41 16 34 H 0.07 1.38 6.52 -2.39 -0.02 1.37 16 35 H 0.04 0.66 6.44 -2.38 -0.02 0.65 16 36 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.44 6.33 -2.39 -0.02 1.42 16 39 H 0.07 1.44 8.12 -2.39 -0.02 1.43 16 40 H 0.04 0.79 6.28 -2.39 -0.02 0.77 16 41 H 0.06 2.09 6.42 -2.38 -0.02 2.07 16 42 H 0.03 1.32 7.56 -2.39 -0.02 1.30 16 Total: -1.00 -61.55 312.66 -0.39 -61.93 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.27 Total: 21.86 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.57 Total: -24.71 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -7.25 Total: -105.49 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.55 -0.39 -61.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380230527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.837 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds