Wall clock time and date at job start Mon Mar 30 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47060 * 2 1 4 4 C 1.50700 * 109.47248 * 240.00237 * 2 1 3 5 5 H 1.08001 * 119.99904 * 239.99674 * 4 2 1 6 6 C 1.37875 * 120.00253 * 59.99389 * 4 2 1 7 7 N 1.31523 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47098 * 120.00078 * 8 6 4 11 11 H 1.48493 * 109.47118 * 239.99931 * 8 6 4 12 12 N 1.46897 * 109.47591 * 119.99581 * 2 1 3 13 13 C 1.46901 * 111.00106 * 275.00441 * 12 2 1 14 14 H 1.08992 * 109.47407 * 34.99725 * 13 12 2 15 15 C 1.53000 * 109.46769 * 274.99427 * 13 12 2 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 20 20 N 1.46905 * 109.46858 * 179.97438 * 18 17 16 21 21 C 1.46898 * 111.00055 * 59.99604 * 20 18 17 22 22 C 1.46898 * 110.99490 * 183.95004 * 20 18 17 23 23 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 24 24 H 1.09004 * 109.47005 * 299.99707 * 1 2 3 25 25 H 1.08997 * 109.47030 * 59.99984 * 1 2 3 26 26 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99812 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00292 * 151.04212 * 12 2 1 29 29 H 1.09002 * 109.47398 * 300.00295 * 15 13 12 30 30 H 1.09001 * 109.47194 * 60.00475 * 15 13 12 31 31 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 32 32 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 33 33 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 35 35 H 1.09009 * 109.46920 * 60.00460 * 21 20 18 36 36 H 1.09004 * 109.47016 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.47490 * 299.99972 * 21 20 18 38 38 H 1.09002 * 109.47401 * 60.00336 * 22 20 18 39 39 H 1.09005 * 109.47112 * 179.97438 * 22 20 18 40 40 H 1.08996 * 109.47331 * 300.00035 * 22 20 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 18 17 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1464 -0.1873 -4.8165 12 7 2.0198 -0.6924 1.1994 13 6 2.0825 0.2228 2.3468 14 1 1.2577 0.9330 2.2907 15 6 3.4112 0.9810 2.3223 16 6 3.4768 1.9337 3.5176 17 6 3.3717 1.1310 4.8159 18 6 2.0431 0.3726 4.8405 19 1 1.2182 1.0830 4.7847 20 7 1.9424 -0.3985 6.0868 21 6 2.0023 0.4850 7.2588 22 6 0.7207 -1.2139 6.1040 23 6 1.9774 -0.5800 3.6451 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7093 1.1617 -3.4845 28 1 2.9174 -1.1204 1.0287 29 1 4.2360 0.2707 2.3784 30 1 3.4862 1.5526 1.3972 31 1 4.4231 2.4743 3.5000 32 1 2.6520 2.6441 3.4619 33 1 3.4180 1.8098 5.6675 34 1 4.1966 0.4207 4.8717 35 1 1.1770 1.1961 7.2203 36 1 1.9252 -0.1116 8.1679 37 1 2.9485 1.0260 7.2581 38 1 0.7352 -1.9081 5.2637 39 1 0.6713 -1.7749 7.0373 40 1 -0.1509 -0.5644 6.0236 41 1 1.0311 -1.1206 3.6629 42 1 2.8023 -1.2903 3.7009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380230530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:27 Heat of formation + Delta-G solvation = -11.409116 kcal Electronic energy + Delta-G solvation = -18220.791007 eV Core-core repulsion = 15620.908107 eV Total energy + Delta-G solvation = -2599.882900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26954 -36.54779 -34.47142 -32.30459 -30.14921 -29.27569 -27.76901 -26.27038 -25.07116 -23.99873 -21.56255 -20.84161 -19.59010 -19.40030 -16.61142 -15.84345 -15.07655 -14.87385 -14.64269 -14.20708 -14.02613 -13.63243 -13.37964 -12.98694 -12.61385 -12.45995 -12.32507 -11.92890 -11.61200 -11.37726 -11.29125 -11.09430 -10.95593 -10.80110 -10.68818 -10.36827 -10.31393 -10.16426 -10.09713 -9.88881 -9.57514 -8.79166 -8.45709 -8.31803 -7.17443 -6.00864 -4.06798 3.29614 3.37548 3.41946 3.92963 4.41846 4.82881 4.96076 5.11527 5.27985 5.30819 5.33525 5.42709 5.46168 5.51752 5.59372 5.66890 5.71017 5.79335 5.82815 5.90713 5.93303 6.03098 6.20465 6.28391 6.38145 6.45558 6.51429 6.72362 6.76973 6.92139 7.08519 7.14018 7.18707 7.28046 7.56549 7.81334 7.93715 8.30358 8.45349 8.73142 9.05406 9.59248 11.05519 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.005127 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.422104 B = 5459.795206 C = 5701.875182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.684 5.684 13 C 0.092 3.908 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.114 4.114 17 C -0.109 4.109 18 C 0.085 3.915 19 H 0.037 0.963 20 N -0.543 5.543 21 C 0.022 3.978 22 C 0.020 3.980 23 C -0.098 4.098 24 H 0.002 0.998 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.331 0.669 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 0.833 15.734 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.314 5.314 13 C -0.020 4.020 14 H 0.085 0.915 15 C -0.187 4.187 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.023 4.023 19 H 0.055 0.945 20 N -0.267 5.267 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.136 4.136 24 H 0.021 0.979 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.123 0.363 15.763 15.910 hybrid contribution 0.298 0.740 -1.130 1.383 sum 2.421 1.103 14.634 14.874 Atomic orbital electron populations 1.21725 0.98110 0.99239 0.99182 1.19090 0.92378 0.92437 0.85657 0.98075 1.21320 1.31199 1.12413 0.90511 0.92226 1.24920 0.95088 0.95006 0.99026 1.69916 1.36826 1.22969 1.23264 0.86488 0.78601 0.79638 0.82953 1.19753 1.21018 1.21142 1.60765 1.32065 1.32595 1.05946 1.21458 0.95539 0.93403 0.91571 0.91495 1.22301 0.99417 0.98937 0.97997 1.21465 1.01301 0.97907 0.94572 1.21603 0.97352 0.98496 0.97226 1.21708 0.96983 0.94331 0.89309 0.94463 1.62031 1.37786 1.24621 1.02288 1.22416 1.00951 0.95964 0.93326 1.22441 0.89972 0.97629 1.02723 1.21602 1.02516 0.97489 0.91992 0.97875 0.90201 0.95055 0.93055 0.85182 0.92197 0.91645 0.92278 0.92360 0.92543 0.91264 0.95989 0.91789 0.91182 0.90429 0.91871 0.95848 0.91544 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.18 37.16 0.34 -2.80 16 2 C 0.21 5.37 2.41 -68.87 -0.17 5.21 16 3 H 0.00 0.04 7.11 -51.92 -0.37 -0.33 16 4 C -0.52 -14.20 8.59 -34.44 -0.30 -14.49 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.68 -14.61 6.05 -100.95 -0.61 -15.22 16 13 C 0.09 1.65 2.28 -67.71 -0.15 1.49 16 14 H 0.07 1.31 7.11 -51.93 -0.37 0.94 16 15 C -0.15 -2.40 5.16 -26.73 -0.14 -2.54 16 16 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 17 C -0.11 -1.36 4.97 -26.73 -0.13 -1.49 16 18 C 0.09 1.15 1.95 -67.71 -0.13 1.01 16 19 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 20 N -0.54 -6.73 4.89 -243.17 -1.19 -7.92 16 21 C 0.02 0.22 9.21 60.06 0.55 0.78 16 22 C 0.02 0.23 9.11 60.06 0.55 0.78 16 23 C -0.10 -1.51 4.45 -26.73 -0.12 -1.63 16 24 H 0.00 0.05 7.43 -51.93 -0.39 -0.33 16 25 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.97 7.96 -39.29 -0.31 6.66 16 29 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.06 1.21 7.43 -51.93 -0.39 0.82 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 36 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 38 H 0.08 0.94 6.23 -51.93 -0.32 0.62 16 39 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -28.13 315.46 -9.02 -37.15 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.63 Total: 3.60 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 0.05 Total: -13.76 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -1.17 Total: -48.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.13 -9.02 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380230530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.745 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds