Wall clock time and date at job start Mon Mar 30 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47060 * 2 1 4 4 C 1.50700 * 109.47248 * 240.00237 * 2 1 3 5 5 H 1.08001 * 119.99904 * 239.99674 * 4 2 1 6 6 C 1.37875 * 120.00253 * 59.99389 * 4 2 1 7 7 N 1.31523 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47098 * 120.00078 * 8 6 4 11 11 H 1.48493 * 109.47118 * 239.99931 * 8 6 4 12 12 N 1.46897 * 109.47591 * 119.99581 * 2 1 3 13 13 C 1.46901 * 111.00106 * 275.00441 * 12 2 1 14 14 H 1.08992 * 109.47407 * 34.99725 * 13 12 2 15 15 C 1.53000 * 109.46769 * 274.99427 * 13 12 2 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 20 20 N 1.46905 * 109.46858 * 179.97438 * 18 17 16 21 21 C 1.46898 * 111.00055 * 59.99604 * 20 18 17 22 22 C 1.46898 * 110.99490 * 183.95004 * 20 18 17 23 23 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 24 24 H 1.09004 * 109.47005 * 299.99707 * 1 2 3 25 25 H 1.08997 * 109.47030 * 59.99984 * 1 2 3 26 26 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99812 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00292 * 151.04212 * 12 2 1 29 29 H 1.09002 * 109.47398 * 300.00295 * 15 13 12 30 30 H 1.09001 * 109.47194 * 60.00475 * 15 13 12 31 31 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 32 32 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 33 33 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 35 35 H 1.09009 * 109.46920 * 60.00460 * 21 20 18 36 36 H 1.09004 * 109.47016 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.47490 * 299.99972 * 21 20 18 38 38 H 1.09002 * 109.47401 * 60.00336 * 22 20 18 39 39 H 1.09005 * 109.47112 * 179.97438 * 22 20 18 40 40 H 1.08996 * 109.47331 * 300.00035 * 22 20 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 18 17 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1464 -0.1873 -4.8165 12 7 2.0198 -0.6924 1.1994 13 6 2.0825 0.2228 2.3468 14 1 1.2577 0.9330 2.2907 15 6 3.4112 0.9810 2.3223 16 6 3.4768 1.9337 3.5176 17 6 3.3717 1.1310 4.8159 18 6 2.0431 0.3726 4.8405 19 1 1.2182 1.0830 4.7847 20 7 1.9424 -0.3985 6.0868 21 6 2.0023 0.4850 7.2588 22 6 0.7207 -1.2139 6.1040 23 6 1.9774 -0.5800 3.6451 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7093 1.1617 -3.4845 28 1 2.9174 -1.1204 1.0287 29 1 4.2360 0.2707 2.3784 30 1 3.4862 1.5526 1.3972 31 1 4.4231 2.4743 3.5000 32 1 2.6520 2.6441 3.4619 33 1 3.4180 1.8098 5.6675 34 1 4.1966 0.4207 4.8717 35 1 1.1770 1.1961 7.2203 36 1 1.9252 -0.1116 8.1679 37 1 2.9485 1.0260 7.2581 38 1 0.7352 -1.9081 5.2637 39 1 0.6713 -1.7749 7.0373 40 1 -0.1509 -0.5644 6.0236 41 1 1.0311 -1.1206 3.6629 42 1 2.8023 -1.2903 3.7009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380230530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:26 Heat of formation + Delta-G solvation = -29.793602 kcal Electronic energy + Delta-G solvation = -18221.588218 eV Core-core repulsion = 15620.908107 eV Total energy + Delta-G solvation = -2600.680111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47234 -37.96116 -36.04378 -34.11104 -31.62671 -30.62955 -28.95449 -27.75294 -27.11793 -25.03081 -22.86007 -22.28608 -21.23820 -20.68687 -18.53434 -17.09932 -16.89832 -16.01054 -15.80623 -15.56900 -15.35657 -15.22187 -14.67949 -14.43968 -14.19088 -13.72471 -13.48065 -13.29072 -13.04747 -12.91391 -12.74987 -12.51035 -12.31888 -12.28240 -12.24278 -12.17085 -12.04952 -11.86839 -11.47697 -11.23432 -11.02106 -10.85023 -10.56534 -9.26843 -8.95699 -8.13258 -6.27064 1.40860 1.42746 1.54645 2.41535 2.95337 3.15474 3.54857 3.80071 4.03345 4.13698 4.22216 4.30043 4.35339 4.49176 4.53611 4.56039 4.64014 4.67858 4.75077 4.77040 4.82418 4.97467 5.03358 5.04878 5.08907 5.11480 5.18476 5.22777 5.27140 5.28612 5.41176 5.46032 5.54745 5.70852 5.87277 6.13146 6.18293 6.22446 6.51486 6.81435 7.03694 7.43613 8.92753 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.005127 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.422104 B = 5459.795206 C = 5701.875182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.219 3.781 3 H -0.029 1.029 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.684 5.684 13 C 0.092 3.908 14 H 0.047 0.953 15 C -0.141 4.141 16 C -0.108 4.108 17 C -0.101 4.101 18 C 0.090 3.910 19 H 0.028 0.972 20 N -0.551 5.551 21 C 0.021 3.979 22 C 0.020 3.980 23 C -0.085 4.085 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.262 0.738 28 H 0.332 0.668 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 0.426 17.101 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H -0.012 1.012 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.313 5.313 13 C -0.019 4.019 14 H 0.065 0.935 15 C -0.180 4.180 16 C -0.147 4.147 17 C -0.139 4.139 18 C -0.019 4.019 19 H 0.046 0.954 20 N -0.275 5.275 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.124 4.124 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.044 -0.046 17.159 17.427 hybrid contribution -0.011 0.877 -1.506 1.743 sum 3.034 0.831 15.653 15.966 Atomic orbital electron populations 1.21556 0.98172 0.98686 0.98719 1.18854 0.92281 0.90900 0.86920 1.01180 1.21629 1.31478 1.12588 0.91666 0.92342 1.25734 0.95181 0.95672 1.02042 1.70040 1.37629 1.24145 1.24044 0.85442 0.78106 0.78618 0.79062 1.19045 1.20633 1.20606 1.60699 1.32201 1.33067 1.05353 1.21496 0.95857 0.93068 0.91431 0.93487 1.22188 0.98426 0.99207 0.98224 1.21428 1.02207 0.97333 0.93690 1.21551 0.96556 0.98603 0.97201 1.21586 0.97434 0.93670 0.89160 0.95356 1.62037 1.38192 1.24967 1.02344 1.22496 1.01436 0.95975 0.92808 1.22461 0.89645 0.97455 1.03254 1.21440 1.01972 0.97432 0.91523 0.96430 0.92512 0.95437 0.92897 0.85045 0.91520 0.94511 0.90438 0.92681 0.90318 0.91085 0.95908 0.90284 0.90322 0.91580 0.90006 0.96070 0.92445 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.18 71.98 0.66 -5.18 16 2 C 0.22 11.41 2.41 44.17 0.11 11.52 16 3 H -0.03 -1.69 7.11 -2.38 -0.02 -1.70 16 4 C -0.54 -29.88 8.59 25.60 0.22 -29.66 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 8 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.68 -29.69 6.05 -473.31 -2.86 -32.55 16 13 C 0.09 3.35 2.28 44.92 0.10 3.45 16 14 H 0.05 1.88 7.11 -2.39 -0.02 1.87 16 15 C -0.14 -4.59 5.16 30.59 0.16 -4.43 16 16 C -0.11 -2.74 5.92 30.59 0.18 -2.55 16 17 C -0.10 -2.27 4.97 30.60 0.15 -2.12 16 18 C 0.09 2.29 1.95 44.92 0.09 2.38 16 19 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 20 N -0.55 -12.42 4.89 -923.26 -4.51 -16.93 16 21 C 0.02 0.36 9.21 127.69 1.18 1.54 16 22 C 0.02 0.42 9.11 127.69 1.16 1.59 16 23 C -0.09 -2.58 4.45 30.59 0.14 -2.45 16 24 H 0.02 0.80 7.43 -2.38 -0.02 0.79 16 25 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.33 14.16 7.96 -89.69 -0.71 13.45 16 29 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 30 H 0.04 1.39 7.43 -2.39 -0.02 1.37 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.46 6.40 -2.39 -0.02 1.45 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.08 1.15 8.12 -2.38 -0.02 1.13 16 37 H 0.08 1.23 6.30 -2.39 -0.02 1.22 16 38 H 0.07 1.54 6.23 -2.39 -0.01 1.53 16 39 H 0.08 1.42 8.12 -2.38 -0.02 1.40 16 40 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 1.84 6.34 -2.39 -0.02 1.82 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -60.18 315.46 -0.26 -60.44 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.26 Total: 21.28 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.59 Total: -24.78 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -7.13 Total: -102.90 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.18 -0.26 -60.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380230530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.645 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds