Wall clock time and date at job start Mon Mar 30 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.53001 * 109.46716 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47337 * 300.00244 * 8 7 6 10 10 C 1.52999 * 109.47215 * 60.00394 * 8 7 6 11 11 C 1.53000 * 109.47131 * 180.02562 * 8 7 6 12 12 C 1.50693 * 109.47387 * 180.02562 * 11 8 7 13 13 H 1.08000 * 119.99977 * 359.97438 * 12 11 8 14 14 C 1.37884 * 120.00082 * 179.97438 * 12 11 8 15 15 N 1.31507 * 119.99928 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99805 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47632 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47006 * 120.00214 * 16 14 12 19 19 H 1.48500 * 109.47393 * 240.00119 * 16 14 12 20 20 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 21 21 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 23 23 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 24 24 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 25 25 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 26 26 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 27 27 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 28 28 H 1.08998 * 114.34501 * 272.36177 * 5 4 3 29 29 H 1.00896 * 110.99579 * 235.11674 * 6 5 4 30 30 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 31 31 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 32 32 H 1.08996 * 109.47505 * 59.99789 * 9 8 7 33 33 H 1.08998 * 109.47112 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.47085 * 300.00173 * 9 8 7 35 35 H 1.08994 * 109.47190 * 59.99585 * 10 8 7 36 36 H 1.09001 * 109.47466 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.46916 * 299.99371 * 10 8 7 38 38 H 1.09003 * 109.46673 * 300.00314 * 11 8 7 39 39 H 1.09003 * 109.46920 * 60.00054 * 11 8 7 40 40 H 0.97004 * 120.00133 * 179.97438 * 15 14 12 41 41 H 1.09005 * 113.47586 * 253.47470 * 20 3 2 42 42 H 1.08996 * 113.47223 * 23.93957 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2981 3.5301 -3.2225 9 6 7.4775 2.9847 -2.4147 10 6 5.9541 2.5513 -4.3470 11 6 6.6756 4.8856 -3.8234 12 6 7.8693 4.7192 -4.7280 13 1 8.3145 3.7442 -4.8607 14 6 8.3931 5.8117 -5.3862 15 7 7.8506 6.9988 -5.2249 16 14 9.8732 5.6055 -6.5069 17 1 10.2915 4.1807 -6.5176 18 1 9.5130 6.0255 -7.8850 19 1 10.9917 6.4464 -6.0096 20 6 3.4743 1.4313 0.2391 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.4846 1.0415 -2.0760 27 1 1.5462 2.5598 -1.7434 28 1 3.4117 3.5334 -0.4627 29 1 5.5072 1.9866 -1.2421 30 1 4.2457 4.0872 -2.8804 31 1 5.3305 4.3963 -1.5035 32 1 7.2089 2.0191 -1.9862 33 1 8.3413 2.8648 -3.0685 34 1 7.7226 3.6820 -1.6136 35 1 5.1139 2.9398 -4.9224 36 1 6.8176 2.4313 -5.0012 37 1 5.6855 1.5856 -3.9186 38 1 5.8355 5.2745 -4.3988 39 1 6.9209 5.5826 -3.0220 40 1 8.2194 7.7675 -5.6877 41 1 3.7395 1.7842 1.2357 42 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382083173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:54 Heat of formation + Delta-G solvation = 17.570956 kcal Electronic energy + Delta-G solvation = -17637.875084 eV Core-core repulsion = 15039.248854 eV Total energy + Delta-G solvation = -2598.626230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22305 -37.33295 -34.04095 -32.44888 -31.32353 -27.15155 -26.45467 -26.35576 -26.01585 -24.64433 -22.46720 -21.46251 -19.85933 -17.81556 -16.24530 -16.14071 -15.91763 -15.49401 -14.58302 -14.50467 -13.88307 -13.52141 -13.24932 -12.92752 -12.69177 -12.54159 -12.42315 -12.00093 -11.86123 -11.66586 -11.14402 -11.08646 -10.93751 -10.78222 -10.73767 -10.55079 -10.47820 -10.23090 -10.07681 -9.68539 -9.12813 -8.97143 -8.79172 -8.31411 -8.14505 -5.95672 -3.95720 3.32717 3.40638 3.43988 3.85688 4.40175 4.42526 4.51538 4.77313 4.96957 5.11184 5.20570 5.34055 5.40210 5.41421 5.49283 5.65278 5.68760 5.70519 5.72904 5.85009 5.93160 5.98157 6.03197 6.21922 6.27597 6.34174 6.51491 6.65458 6.79273 6.82999 6.94853 7.21257 7.22707 7.26347 7.39919 7.63756 7.71833 7.86493 8.04799 8.49188 9.09965 9.67111 11.16046 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.003986 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299089 B = 7022.922159 C = 7069.779642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 N -0.476 5.476 4 C 0.009 3.991 5 C 0.056 3.944 6 N -0.674 5.674 7 C 0.070 3.930 8 C -0.059 4.059 9 C -0.129 4.129 10 C -0.115 4.115 11 C 0.033 3.967 12 C -0.506 4.506 13 H 0.059 0.941 14 C 0.054 3.946 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.007 4.007 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.340 0.660 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.258 0.742 41 H 0.081 0.919 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -12.226 9.862 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 N -0.199 5.199 4 C -0.120 4.120 5 C -0.056 4.056 6 N -0.307 5.307 7 C -0.059 4.059 8 C -0.060 4.060 9 C -0.186 4.186 10 C -0.173 4.173 11 C -0.004 4.004 12 C -0.544 4.544 13 H 0.078 0.922 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.137 4.137 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.715 -11.918 9.714 18.741 hybrid contribution 1.688 -0.020 -0.403 1.735 sum -9.028 -11.937 9.311 17.626 Atomic orbital electron populations 1.21652 0.94686 1.01144 1.02471 1.22633 0.96977 0.90610 1.01098 1.68857 1.13745 1.19302 1.17959 1.24063 0.96947 1.00005 0.90999 1.23115 0.92491 0.97766 0.92180 1.60681 1.08199 1.25817 1.35961 1.22172 0.98693 0.88077 0.96947 1.20641 0.91984 0.99049 0.94295 1.21767 0.99345 0.97979 0.99525 1.21594 1.00623 0.97434 0.97627 1.19126 0.96373 0.89583 0.95327 1.21278 1.13183 0.94042 1.25946 0.92248 1.25021 0.97158 0.95444 0.97019 1.69975 1.41136 0.99123 1.43497 0.86611 0.83037 0.78093 0.80708 1.19785 1.21163 1.21200 1.24113 0.90328 0.99120 1.00122 0.92610 0.92119 0.92685 0.93593 0.91306 0.90451 0.90227 0.89836 0.83921 0.91490 0.95654 0.94886 0.91707 0.94069 0.94169 0.92706 0.94015 0.96668 0.96907 0.93221 0.90064 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.02 0.15 5.54 -3.82 -0.02 0.13 16 3 N -0.48 -5.39 6.33 -244.61 -1.55 -6.94 16 4 C 0.01 0.11 7.52 -7.54 -0.06 0.06 16 5 C 0.06 0.69 4.49 -67.49 -0.30 0.39 16 6 N -0.67 -9.48 5.80 -106.43 -0.62 -10.09 16 7 C 0.07 1.19 4.49 -3.83 -0.02 1.17 16 8 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 9 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 10 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 11 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 12 C -0.51 -13.82 7.65 -34.44 -0.26 -14.08 16 13 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.01 -0.08 7.28 -7.53 -0.05 -0.13 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.44 7.30 -51.93 -0.38 0.06 16 25 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.08 0.95 7.42 -51.93 -0.39 0.56 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 29 H 0.34 4.55 6.61 -39.29 -0.26 4.29 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.51 6.57 -51.93 -0.34 0.16 16 33 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 37 H 0.04 0.72 7.60 -51.93 -0.39 0.32 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.76 7.91 -51.93 -0.41 0.34 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -28.74 325.68 -9.36 -38.10 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.77 Total: -0.01 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.05 Total: -16.39 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -1.43 Total: -43.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.74 -9.36 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382083173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.669 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds