Wall clock time and date at job start Mon Mar 30 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.53001 * 109.46716 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47337 * 300.00244 * 8 7 6 10 10 C 1.52999 * 109.47215 * 60.00394 * 8 7 6 11 11 C 1.53000 * 109.47131 * 180.02562 * 8 7 6 12 12 C 1.50693 * 109.47387 * 180.02562 * 11 8 7 13 13 H 1.08000 * 119.99977 * 359.97438 * 12 11 8 14 14 C 1.37884 * 120.00082 * 179.97438 * 12 11 8 15 15 N 1.31507 * 119.99928 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99805 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47632 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47006 * 120.00214 * 16 14 12 19 19 H 1.48500 * 109.47393 * 240.00119 * 16 14 12 20 20 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 21 21 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 23 23 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 24 24 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 25 25 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 26 26 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 27 27 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 28 28 H 1.08998 * 114.34501 * 272.36177 * 5 4 3 29 29 H 1.00896 * 110.99579 * 235.11674 * 6 5 4 30 30 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 31 31 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 32 32 H 1.08996 * 109.47505 * 59.99789 * 9 8 7 33 33 H 1.08998 * 109.47112 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.47085 * 300.00173 * 9 8 7 35 35 H 1.08994 * 109.47190 * 59.99585 * 10 8 7 36 36 H 1.09001 * 109.47466 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.46916 * 299.99371 * 10 8 7 38 38 H 1.09003 * 109.46673 * 300.00314 * 11 8 7 39 39 H 1.09003 * 109.46920 * 60.00054 * 11 8 7 40 40 H 0.97004 * 120.00133 * 179.97438 * 15 14 12 41 41 H 1.09005 * 113.47586 * 253.47470 * 20 3 2 42 42 H 1.08996 * 113.47223 * 23.93957 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2981 3.5301 -3.2225 9 6 7.4775 2.9847 -2.4147 10 6 5.9541 2.5513 -4.3470 11 6 6.6756 4.8856 -3.8234 12 6 7.8693 4.7192 -4.7280 13 1 8.3145 3.7442 -4.8607 14 6 8.3931 5.8117 -5.3862 15 7 7.8506 6.9988 -5.2249 16 14 9.8732 5.6055 -6.5069 17 1 10.2915 4.1807 -6.5176 18 1 9.5130 6.0255 -7.8850 19 1 10.9917 6.4464 -6.0096 20 6 3.4743 1.4313 0.2391 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.4846 1.0415 -2.0760 27 1 1.5462 2.5598 -1.7434 28 1 3.4117 3.5334 -0.4627 29 1 5.5072 1.9866 -1.2421 30 1 4.2457 4.0872 -2.8804 31 1 5.3305 4.3963 -1.5035 32 1 7.2089 2.0191 -1.9862 33 1 8.3413 2.8648 -3.0685 34 1 7.7226 3.6820 -1.6136 35 1 5.1139 2.9398 -4.9224 36 1 6.8176 2.4313 -5.0012 37 1 5.6855 1.5856 -3.9186 38 1 5.8355 5.2745 -4.3988 39 1 6.9209 5.5826 -3.0220 40 1 8.2194 7.7675 -5.6877 41 1 3.7395 1.7842 1.2357 42 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382083173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:54 Heat of formation + Delta-G solvation = -2.036527 kcal Electronic energy + Delta-G solvation = -17638.725328 eV Core-core repulsion = 15039.248854 eV Total energy + Delta-G solvation = -2599.476474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15619 -38.87416 -35.41165 -34.17571 -32.47224 -29.02813 -27.88925 -27.62896 -26.97719 -26.06141 -24.19231 -22.36854 -20.85060 -19.42709 -18.32729 -17.20627 -16.83930 -16.56234 -16.40242 -15.62379 -15.35921 -14.96025 -14.48886 -14.29540 -13.91700 -13.76947 -13.59930 -13.41712 -13.28060 -12.81547 -12.70003 -12.54571 -12.50448 -12.25166 -12.13491 -11.96962 -11.89564 -11.64471 -11.44226 -11.36054 -10.84222 -10.69791 -10.50705 -9.90879 -9.33663 -8.13561 -6.20485 1.40489 1.41624 1.53682 2.44117 2.94980 3.20523 3.36932 3.48656 4.00708 4.06163 4.17453 4.22358 4.28036 4.36618 4.41330 4.53651 4.64523 4.67855 4.76336 4.81211 4.85443 4.91379 4.96205 4.99562 5.07269 5.09544 5.23158 5.23779 5.29482 5.44086 5.53177 5.55190 5.60114 5.66349 5.88573 5.93909 6.10351 6.11400 6.37642 6.51493 6.95189 7.46941 8.99056 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.003986 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299089 B = 7022.922159 C = 7069.779642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.014 3.986 3 N -0.486 5.486 4 C 0.012 3.988 5 C 0.050 3.950 6 N -0.666 5.666 7 C 0.084 3.916 8 C -0.056 4.056 9 C -0.122 4.122 10 C -0.106 4.106 11 C 0.039 3.961 12 C -0.512 4.512 13 H 0.067 0.933 14 C -0.006 4.006 15 N -0.939 5.939 16 Si 0.956 3.044 17 H -0.260 1.260 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.004 3.996 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.348 0.652 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.068 0.932 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -14.483 10.505 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 N -0.209 5.209 4 C -0.117 4.117 5 C -0.061 4.061 6 N -0.299 5.299 7 C -0.046 4.046 8 C -0.057 4.057 9 C -0.179 4.179 10 C -0.163 4.163 11 C 0.002 3.998 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.202 4.202 15 N -0.580 5.580 16 Si 0.782 3.218 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.126 4.126 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.169 0.831 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.459 -14.200 10.369 20.458 hybrid contribution 1.540 0.682 -0.567 1.777 sum -8.918 -13.518 9.802 18.930 Atomic orbital electron populations 1.21639 0.94131 1.02068 1.01861 1.22699 0.97475 0.89617 1.01678 1.68866 1.14166 1.20657 1.17229 1.24005 0.96400 0.99819 0.91507 1.23130 0.91935 0.98136 0.92883 1.60598 1.08907 1.23636 1.36781 1.21850 0.96919 0.89587 0.96231 1.20510 0.93920 0.96058 0.95182 1.21681 0.97749 0.99672 0.98815 1.21496 0.99451 0.98382 0.97007 1.19012 0.94709 0.92123 0.93982 1.21658 1.13475 0.94239 1.25688 0.91520 1.25931 1.00295 0.95177 0.98811 1.70116 1.42960 1.00036 1.44900 0.85521 0.79251 0.78639 0.78404 1.18377 1.20926 1.20831 1.24073 0.90078 0.98627 0.99801 0.90956 0.92506 0.93493 0.93406 0.90240 0.90474 0.90852 0.90706 0.83089 0.92749 0.96246 0.91235 0.93483 0.94414 0.95217 0.94313 0.91315 0.99884 0.99790 0.93189 0.89203 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.24 71.98 0.74 -1.40 16 2 C 0.01 0.23 5.54 86.30 0.48 0.71 16 3 N -0.49 -10.05 6.33 -927.82 -5.88 -15.92 16 4 C 0.01 0.28 7.52 83.58 0.63 0.91 16 5 C 0.05 1.17 4.49 45.37 0.20 1.37 16 6 N -0.67 -17.42 5.80 -490.65 -2.85 -20.27 16 7 C 0.08 2.82 4.49 86.30 0.39 3.20 16 8 C -0.06 -2.20 0.60 -52.18 -0.03 -2.24 16 9 C -0.12 -4.27 7.89 71.98 0.57 -3.71 16 10 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 11 C 0.04 2.04 4.04 29.85 0.12 2.16 16 12 C -0.51 -28.34 7.65 25.60 0.20 -28.14 16 13 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 14 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 15 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 16 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C 0.00 0.07 7.28 83.58 0.61 0.68 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.05 0.80 7.30 -2.39 -0.02 0.78 16 25 H 0.08 1.18 8.08 -2.38 -0.02 1.16 16 26 H 0.08 1.74 7.42 -2.38 -0.02 1.73 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 1.91 7.87 -2.39 -0.02 1.89 16 29 H 0.35 8.23 6.61 -89.70 -0.59 7.64 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.92 6.57 -2.39 -0.02 1.91 16 33 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 1.55 6.62 -2.39 -0.02 1.54 16 37 H 0.07 2.19 7.60 -2.39 -0.02 2.17 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.08 1.44 7.91 -2.39 -0.02 1.42 16 Total: -1.00 -62.21 325.68 -1.10 -63.31 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.37 Total: 13.42 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 4.94 Total: -29.71 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -8.44 Total: -93.54 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.21 -1.10 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382083173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.275 kcal (2) G-P(sol) polarization free energy of solvation -62.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds