Wall clock time and date at job start Mon Mar 30 2020 03:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47301 * 2 1 4 4 N 1.46905 * 109.46702 * 240.00398 * 2 1 3 5 5 C 1.52994 * 109.47556 * 120.00500 * 2 1 3 6 6 H 1.09000 * 110.64616 * 61.40182 * 5 2 1 7 7 C 1.54599 * 110.72688 * 184.55334 * 5 2 1 8 8 C 1.53990 * 105.13925 * 140.31314 * 7 5 2 9 9 N 1.47899 * 107.06094 * 1.22784 * 8 7 5 10 10 C 1.46896 * 111.00121 * 214.15192 * 9 8 7 11 11 C 1.52999 * 109.47214 * 175.81472 * 10 9 8 12 12 C 1.52996 * 109.47472 * 174.83594 * 11 10 9 13 13 C 1.53002 * 109.47622 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99611 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00224 * 179.72397 * 14 13 12 17 17 N 1.31526 * 119.99732 * 0.27882 * 16 14 13 18 18 Si 1.86795 * 120.00431 * 180.27532 * 16 14 13 19 19 H 1.48495 * 109.47102 * 90.00085 * 18 16 14 20 20 H 1.48500 * 109.47040 * 210.00209 * 18 16 14 21 21 H 1.48499 * 109.46730 * 330.00024 * 18 16 14 22 22 C 1.48532 * 105.81999 * 334.67138 * 9 8 7 23 23 H 1.09005 * 109.46367 * 299.99701 * 1 2 3 24 24 H 1.08996 * 109.47491 * 59.99486 * 1 2 3 25 25 H 1.08998 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.00904 * 110.99928 * 295.09254 * 4 2 1 27 27 H 1.00905 * 111.00193 * 59.04875 * 4 2 1 28 28 H 1.08998 * 110.30654 * 21.39699 * 7 5 2 29 29 H 1.09001 * 110.30661 * 259.23417 * 7 5 2 30 30 H 1.08995 * 109.91629 * 241.87383 * 8 7 5 31 31 H 1.08996 * 110.08046 * 120.67192 * 8 7 5 32 32 H 1.09004 * 109.47104 * 55.82335 * 10 9 8 33 33 H 1.08993 * 109.47449 * 295.81775 * 10 9 8 34 34 H 1.09009 * 109.46652 * 54.84123 * 11 10 9 35 35 H 1.08999 * 109.47351 * 294.84566 * 11 10 9 36 36 H 1.09009 * 109.46750 * 60.00589 * 12 11 10 37 37 H 1.08999 * 109.47626 * 300.00803 * 12 11 10 38 38 H 1.08995 * 109.47042 * 60.00156 * 13 12 11 39 39 H 1.09007 * 109.46780 * 300.00259 * 13 12 11 40 40 H 0.96993 * 119.99560 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.66903 * 157.64339 * 22 9 8 42 42 H 1.09010 * 110.66280 * 280.77289 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1996 5 6 2.0401 -0.7213 1.2491 6 1 1.7080 -1.7594 1.2560 7 6 3.5814 -0.6395 1.3370 8 6 3.8876 -0.4109 2.8288 9 7 2.5912 -0.3971 3.5406 10 6 2.6208 0.5416 4.6701 11 6 1.2354 0.6061 5.3161 12 6 1.2968 1.4829 6.5684 13 6 -0.0885 1.5468 7.2148 14 6 -0.0280 2.4110 8.4480 15 1 0.9052 2.8685 8.7415 16 6 -1.1652 2.6218 9.1985 17 7 -2.3016 2.0642 8.8412 18 14 -1.0921 3.6992 10.7227 19 1 -1.3786 5.1072 10.3478 20 1 -2.1019 3.2336 11.7068 21 1 0.2625 3.6131 11.3250 22 6 1.5803 0.0139 2.5330 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7635 -1.6683 -1.1836 27 1 1.6833 -0.2440 -2.0386 28 1 3.9504 0.1963 0.7427 29 1 4.0298 -1.5733 0.9975 30 1 4.3943 0.5449 2.9616 31 1 4.5123 -1.2184 3.2107 32 1 2.9010 1.5323 4.3120 33 1 3.3494 0.2018 5.4061 34 1 0.9159 -0.3991 5.5917 35 1 0.5240 1.0322 4.6087 36 1 1.6163 2.4880 6.2928 37 1 2.0082 1.0568 7.2759 38 1 -0.4076 0.5417 7.4904 39 1 -0.8001 1.9729 6.5075 40 1 -3.1017 2.2128 9.3690 41 1 0.5849 -0.3162 2.8299 42 1 1.6008 1.0939 2.3861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385319096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:34 Heat of formation + Delta-G solvation = -29.432606 kcal Electronic energy + Delta-G solvation = -17277.759882 eV Core-core repulsion = 14677.095425 eV Total energy + Delta-G solvation = -2600.664457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45612 -36.38438 -34.57253 -32.63825 -30.84709 -29.75188 -27.78925 -27.70893 -24.64212 -22.93836 -21.45775 -20.46426 -20.31622 -19.74864 -16.49345 -16.21093 -15.83409 -15.40137 -14.76688 -14.42081 -14.30534 -14.01437 -13.46571 -13.23966 -12.97652 -12.84376 -12.30960 -12.19128 -11.89662 -11.55597 -11.31718 -11.17719 -11.00813 -10.94836 -10.84007 -10.56499 -10.48203 -10.42986 -10.31781 -9.59231 -9.22696 -8.98766 -8.96958 -8.31691 -8.29441 -5.95906 -3.97973 3.33992 3.39961 3.43742 4.02373 4.18422 4.48983 4.62818 4.63771 4.81466 5.06250 5.09140 5.16763 5.31272 5.39456 5.44302 5.51688 5.55404 5.59778 5.70399 5.73181 5.85454 5.92657 5.95003 5.97893 6.08733 6.16680 6.24721 6.33205 6.53764 6.83663 6.86200 6.99678 7.01784 7.13343 7.15677 7.29131 7.73323 7.89529 8.05427 8.48436 9.09551 9.65752 11.15486 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.003700 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.408506 B = 7566.077847 C = 8077.838788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.095 3.905 3 H 0.079 0.921 4 N -0.844 5.844 5 C -0.085 4.085 6 H 0.079 0.921 7 C -0.111 4.111 8 C 0.031 3.969 9 N -0.518 5.518 10 C 0.048 3.952 11 C -0.115 4.115 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.042 3.958 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.339 0.661 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 -5.537 -18.798 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.017 4.017 3 H 0.097 0.903 4 N -0.372 5.372 5 C -0.104 4.104 6 H 0.098 0.902 7 C -0.149 4.149 8 C -0.097 4.097 9 N -0.242 5.242 10 C -0.080 4.080 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.086 4.086 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.336 -5.862 -18.249 21.320 hybrid contribution -0.958 1.284 0.411 1.654 sum 8.378 -4.578 -17.838 20.232 Atomic orbital electron populations 1.22666 0.97500 1.02185 1.02575 1.21469 0.92182 0.98145 0.89928 0.90284 1.58909 1.67315 1.06906 1.04078 1.22093 0.95645 0.99767 0.92912 0.90241 1.22280 0.95347 1.02292 0.94990 1.22917 0.92475 1.00635 0.93720 1.64801 1.03966 1.47979 1.07445 1.22411 0.99659 0.93019 0.92894 1.21673 0.94460 1.01185 0.97930 1.21600 1.01089 0.97378 0.94667 1.19086 0.90516 0.96994 0.94959 1.21297 0.95035 1.29765 1.09680 0.92775 1.25036 0.95572 0.96104 0.97853 1.69975 0.99778 1.44303 1.39552 0.86607 0.77776 0.80704 0.82997 1.20722 1.21235 1.19888 1.23240 0.97169 0.97690 0.90497 0.91422 0.92849 0.92563 0.84887 0.84855 0.91358 0.91280 0.94084 0.90701 0.95134 0.90865 0.91649 0.92786 0.93732 0.93406 0.96610 0.96807 0.93077 0.89829 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 9.28 37.16 0.34 -1.23 16 2 C 0.09 0.82 2.78 -67.71 -0.19 0.63 16 3 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 4 N -0.84 -6.25 9.03 -4.66 -0.04 -6.30 16 5 C -0.08 -0.86 2.74 -88.76 -0.24 -1.10 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.11 -1.13 6.28 -25.37 -0.16 -1.28 16 8 C 0.03 0.36 6.70 -2.76 -0.02 0.34 16 9 N -0.52 -7.12 5.35 -230.47 -1.23 -8.35 16 10 C 0.05 0.72 4.84 -3.83 -0.02 0.71 16 11 C -0.11 -2.04 4.90 -26.73 -0.13 -2.17 16 12 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.04 0.52 3.79 -1.90 -0.01 0.52 16 23 H 0.07 0.63 7.26 -51.93 -0.38 0.25 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.34 2.24 8.98 -39.29 -0.35 1.89 16 27 H 0.34 2.06 9.03 -39.29 -0.35 1.70 16 28 H 0.07 0.69 7.83 -51.93 -0.41 0.29 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.05 0.95 7.18 -51.93 -0.37 0.58 16 36 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 1.09 7.65 -51.93 -0.40 0.69 16 42 H 0.04 0.57 7.92 -51.92 -0.41 0.16 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -30.55 329.73 -9.80 -40.35 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.10 Total: -1.39 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.11 Total: -19.53 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.54 Total: -41.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.55 -9.80 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.918 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds