Wall clock time and date at job start Mon Mar 30 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47301 * 2 1 4 4 N 1.46905 * 109.46702 * 240.00398 * 2 1 3 5 5 C 1.52994 * 109.47556 * 120.00500 * 2 1 3 6 6 H 1.09000 * 110.64616 * 61.40182 * 5 2 1 7 7 C 1.54599 * 110.72688 * 184.55334 * 5 2 1 8 8 C 1.53990 * 105.13925 * 140.31314 * 7 5 2 9 9 N 1.47899 * 107.06094 * 1.22784 * 8 7 5 10 10 C 1.46896 * 111.00121 * 214.15192 * 9 8 7 11 11 C 1.52999 * 109.47214 * 175.81472 * 10 9 8 12 12 C 1.52996 * 109.47472 * 174.83594 * 11 10 9 13 13 C 1.53002 * 109.47622 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99611 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00224 * 179.72397 * 14 13 12 17 17 N 1.31526 * 119.99732 * 0.27882 * 16 14 13 18 18 Si 1.86795 * 120.00431 * 180.27532 * 16 14 13 19 19 H 1.48495 * 109.47102 * 90.00085 * 18 16 14 20 20 H 1.48500 * 109.47040 * 210.00209 * 18 16 14 21 21 H 1.48499 * 109.46730 * 330.00024 * 18 16 14 22 22 C 1.48532 * 105.81999 * 334.67138 * 9 8 7 23 23 H 1.09005 * 109.46367 * 299.99701 * 1 2 3 24 24 H 1.08996 * 109.47491 * 59.99486 * 1 2 3 25 25 H 1.08998 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.00904 * 110.99928 * 295.09254 * 4 2 1 27 27 H 1.00905 * 111.00193 * 59.04875 * 4 2 1 28 28 H 1.08998 * 110.30654 * 21.39699 * 7 5 2 29 29 H 1.09001 * 110.30661 * 259.23417 * 7 5 2 30 30 H 1.08995 * 109.91629 * 241.87383 * 8 7 5 31 31 H 1.08996 * 110.08046 * 120.67192 * 8 7 5 32 32 H 1.09004 * 109.47104 * 55.82335 * 10 9 8 33 33 H 1.08993 * 109.47449 * 295.81775 * 10 9 8 34 34 H 1.09009 * 109.46652 * 54.84123 * 11 10 9 35 35 H 1.08999 * 109.47351 * 294.84566 * 11 10 9 36 36 H 1.09009 * 109.46750 * 60.00589 * 12 11 10 37 37 H 1.08999 * 109.47626 * 300.00803 * 12 11 10 38 38 H 1.08995 * 109.47042 * 60.00156 * 13 12 11 39 39 H 1.09007 * 109.46780 * 300.00259 * 13 12 11 40 40 H 0.96993 * 119.99560 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.66903 * 157.64339 * 22 9 8 42 42 H 1.09010 * 110.66280 * 280.77289 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1996 5 6 2.0401 -0.7213 1.2491 6 1 1.7080 -1.7594 1.2560 7 6 3.5814 -0.6395 1.3370 8 6 3.8876 -0.4109 2.8288 9 7 2.5912 -0.3971 3.5406 10 6 2.6208 0.5416 4.6701 11 6 1.2354 0.6061 5.3161 12 6 1.2968 1.4829 6.5684 13 6 -0.0885 1.5468 7.2148 14 6 -0.0280 2.4110 8.4480 15 1 0.9052 2.8685 8.7415 16 6 -1.1652 2.6218 9.1985 17 7 -2.3016 2.0642 8.8412 18 14 -1.0921 3.6992 10.7227 19 1 -1.3786 5.1072 10.3478 20 1 -2.1019 3.2336 11.7068 21 1 0.2625 3.6131 11.3250 22 6 1.5803 0.0139 2.5330 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7635 -1.6683 -1.1836 27 1 1.6833 -0.2440 -2.0386 28 1 3.9504 0.1963 0.7427 29 1 4.0298 -1.5733 0.9975 30 1 4.3943 0.5449 2.9616 31 1 4.5123 -1.2184 3.2107 32 1 2.9010 1.5323 4.3120 33 1 3.3494 0.2018 5.4061 34 1 0.9159 -0.3991 5.5917 35 1 0.5240 1.0322 4.6087 36 1 1.6163 2.4880 6.2928 37 1 2.0082 1.0568 7.2759 38 1 -0.4076 0.5417 7.4904 39 1 -0.8001 1.9729 6.5075 40 1 -3.1017 2.2128 9.3690 41 1 0.5849 -0.3162 2.8299 42 1 1.6008 1.0939 2.3861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385319096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:33 Heat of formation + Delta-G solvation = -50.214354 kcal Electronic energy + Delta-G solvation = -17278.661046 eV Core-core repulsion = 14677.095425 eV Total energy + Delta-G solvation = -2601.565621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40246 -37.39989 -36.16453 -34.48159 -32.25997 -30.55284 -29.38800 -28.53841 -26.35497 -24.17796 -22.71020 -21.75919 -21.51829 -20.86860 -18.43474 -17.30515 -16.85829 -16.57937 -16.38069 -15.89067 -15.26451 -14.91347 -14.58804 -14.43098 -14.17142 -13.96381 -13.75254 -13.63887 -13.21415 -12.88675 -12.79113 -12.71024 -12.31142 -12.22775 -12.06347 -11.93002 -11.83535 -11.67177 -11.38798 -11.33300 -11.30157 -10.98347 -10.56100 -9.58775 -9.36597 -8.20551 -6.32203 1.39033 1.40910 1.52190 2.40461 3.01037 3.12055 3.45360 3.72896 3.82458 4.05185 4.08994 4.18568 4.31904 4.35960 4.37718 4.46923 4.51239 4.58403 4.68913 4.75078 4.84923 4.86097 4.92835 4.93484 5.05159 5.11960 5.17051 5.21070 5.26104 5.29152 5.32648 5.44341 5.53457 5.75876 5.85447 5.98518 6.10174 6.25095 6.27892 6.64502 6.85102 7.37140 8.91416 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.003700 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.408506 B = 7566.077847 C = 8077.838788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.102 3.898 3 H 0.073 0.927 4 N -0.844 5.844 5 C -0.077 4.077 6 H 0.078 0.922 7 C -0.103 4.103 8 C 0.029 3.971 9 N -0.531 5.531 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.097 4.097 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.041 3.959 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.345 0.655 27 H 0.348 0.652 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.051 0.949 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 -5.163 -19.282 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.010 4.010 3 H 0.091 0.909 4 N -0.374 5.374 5 C -0.097 4.097 6 H 0.096 0.904 7 C -0.141 4.141 8 C -0.098 4.098 9 N -0.255 5.255 10 C -0.070 4.070 11 C -0.141 4.141 12 C -0.135 4.135 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.088 4.088 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.600 -5.493 -18.754 22.232 hybrid contribution -1.378 1.132 0.530 1.860 sum 9.223 -4.362 -18.224 20.885 Atomic orbital electron populations 1.22640 0.97352 1.02280 1.02377 1.21314 0.92178 0.97675 0.89835 0.90899 1.58871 1.67265 1.07317 1.03946 1.22026 0.95710 0.99476 0.92459 0.90354 1.22231 0.95131 1.02836 0.93943 1.22982 0.91382 1.01029 0.94437 1.64768 1.05449 1.47537 1.07767 1.22212 0.97463 0.93802 0.93544 1.21484 0.96480 0.99614 0.96495 1.21407 0.97648 0.98562 0.95868 1.19008 0.93068 0.94843 0.94381 1.21742 0.95535 1.30347 1.10702 0.92183 1.26032 0.95043 0.97505 1.01477 1.70111 1.00606 1.45636 1.41123 0.85418 0.78302 0.78706 0.78456 1.19665 1.20648 1.18684 1.23238 0.96419 0.97722 0.91380 0.92838 0.91829 0.92322 0.84229 0.83798 0.91069 0.90403 0.93827 0.90131 0.94624 0.90508 0.92730 0.93080 0.93156 0.92984 0.99280 0.99292 0.92762 0.91061 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 9.28 71.98 0.67 -2.26 16 2 C 0.10 1.62 2.78 44.91 0.12 1.75 16 3 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 4 N -0.84 -10.85 9.03 -168.67 -1.52 -12.37 16 5 C -0.08 -1.46 2.74 -9.59 -0.03 -1.49 16 6 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.10 -1.89 6.28 31.47 0.20 -1.70 16 8 C 0.03 0.63 6.70 86.45 0.58 1.21 16 9 N -0.53 -14.10 5.35 -883.06 -4.73 -18.82 16 10 C 0.06 1.70 4.84 86.30 0.42 2.12 16 11 C -0.10 -3.68 4.90 30.59 0.15 -3.53 16 12 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 13 C 0.02 1.33 4.97 29.85 0.15 1.47 16 14 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 17 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.04 0.99 3.79 86.65 0.33 1.31 16 23 H 0.05 0.99 7.26 -2.38 -0.02 0.97 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.34 3.86 8.98 -89.69 -0.81 3.06 16 27 H 0.35 3.51 9.03 -89.69 -0.81 2.70 16 28 H 0.07 1.29 7.83 -2.39 -0.02 1.27 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.04 0.92 7.67 -2.39 -0.02 0.90 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.01 7.97 -2.39 -0.02 0.99 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.05 1.84 7.18 -2.39 -0.02 1.82 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 39 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.07 1.88 7.65 -2.39 -0.02 1.86 16 42 H 0.04 1.03 7.92 -2.38 -0.02 1.01 16 Total: -1.00 -65.09 329.73 -1.15 -66.23 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -0.65 Total: 12.46 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.44 Total: -36.64 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -5.96 Total: -89.17 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.09 -1.15 -66.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.019 kcal (2) G-P(sol) polarization free energy of solvation -65.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds