Wall clock time and date at job start Mon Mar 30 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47620 * 2 1 4 4 N 1.46898 * 109.47214 * 120.00398 * 2 1 3 5 5 C 1.53002 * 109.46794 * 240.00505 * 2 1 3 6 6 H 1.09001 * 110.87976 * 62.39081 * 5 2 1 7 7 C 1.55135 * 110.99062 * 298.54375 * 5 2 1 8 8 C 1.54322 * 103.02006 * 206.25834 * 7 5 2 9 9 N 1.47439 * 107.23490 * 22.28319 * 8 7 5 10 10 C 1.46901 * 110.99961 * 123.25626 * 9 8 7 11 11 C 1.53000 * 109.46769 * 69.87863 * 10 9 8 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00776 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99696 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47265 * 89.99852 * 18 16 14 20 20 H 1.48502 * 109.47140 * 209.99881 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99994 * 18 16 14 22 22 C 1.47853 * 108.56569 * 0.99003 * 9 8 7 23 23 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47008 * 299.99711 * 1 2 3 25 25 H 1.09003 * 109.47144 * 59.99676 * 1 2 3 26 26 H 1.00898 * 111.00433 * 296.04279 * 4 2 1 27 27 H 1.00897 * 110.99842 * 60.00142 * 4 2 1 28 28 H 1.09003 * 110.71015 * 87.87432 * 7 5 2 29 29 H 1.09004 * 110.85568 * 324.71096 * 7 5 2 30 30 H 1.09003 * 109.88473 * 262.87599 * 8 7 5 31 31 H 1.09003 * 110.01953 * 141.76715 * 8 7 5 32 32 H 1.09002 * 109.47401 * 309.87571 * 10 9 8 33 33 H 1.09001 * 109.46874 * 189.87583 * 10 9 8 34 34 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 35 35 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 38 38 H 1.08992 * 109.47098 * 299.99158 * 13 12 11 39 39 H 1.09001 * 109.47583 * 60.00267 * 13 12 11 40 40 H 0.96996 * 120.00667 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.36766 * 94.73414 * 22 9 8 42 42 H 1.08997 * 110.37443 * 217.07382 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0399 -0.7212 -1.2493 6 1 1.7244 -0.2013 -2.1540 7 6 1.5726 -2.2004 -1.2668 8 6 2.6560 -2.8972 -2.1166 9 7 3.8620 -2.0506 -2.0667 10 6 5.0159 -2.8073 -1.5628 11 6 5.4424 -3.8418 -2.6063 12 6 6.6438 -4.6304 -2.0812 13 6 7.0706 -5.6644 -3.1250 14 6 8.2544 -6.4407 -2.6081 15 1 8.6613 -6.2191 -1.6324 16 6 8.8174 -7.4347 -3.3801 17 7 9.8501 -8.1126 -2.9289 18 14 8.1132 -7.8186 -5.0672 19 1 8.7931 -6.9829 -6.0893 20 1 8.3289 -9.2545 -5.3786 21 1 6.6578 -7.5236 -5.0749 22 6 3.5803 -0.8801 -1.2084 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.7503 -0.1991 2.0372 27 1 1.6962 -1.6480 1.2226 28 1 0.5947 -2.2901 -1.7400 29 1 1.5502 -2.6122 -0.2578 30 1 2.3135 -2.9944 -3.1469 31 1 2.8769 -3.8821 -1.7050 32 1 4.7416 -3.3155 -0.6383 33 1 5.8426 -2.1236 -1.3700 34 1 4.6157 -4.5255 -2.7990 35 1 5.7167 -3.3337 -3.5307 36 1 7.4707 -3.9470 -1.8882 37 1 6.3690 -5.1386 -1.1569 38 1 6.2440 -6.3479 -3.3184 39 1 7.3456 -5.1559 -4.0490 40 1 10.2464 -8.8116 -3.4722 41 1 3.9154 -1.0682 -0.1884 42 1 4.0645 0.0101 -1.6098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385319097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:35 Heat of formation + Delta-G solvation = -21.257385 kcal Electronic energy + Delta-G solvation = -17318.596672 eV Core-core repulsion = 14718.286719 eV Total energy + Delta-G solvation = -2600.309953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.60431 -36.48013 -34.55097 -32.48512 -30.93625 -29.20981 -29.01461 -27.81652 -24.54007 -23.06066 -21.85543 -20.38825 -19.95743 -19.29488 -17.13362 -16.57953 -15.93470 -15.37703 -14.56798 -14.53260 -14.21111 -13.74723 -13.54329 -13.39742 -13.12600 -12.87804 -12.59427 -12.32663 -11.98073 -11.84828 -11.58353 -11.28052 -11.02228 -10.91967 -10.83737 -10.67010 -10.65402 -10.36277 -9.81166 -9.59335 -9.40237 -9.08714 -9.01223 -8.47085 -8.14127 -5.97910 -3.95131 3.36161 3.42807 3.48026 4.04010 4.20149 4.32305 4.51664 4.63003 4.68934 4.89678 5.00557 5.06158 5.31553 5.36322 5.38274 5.42949 5.46217 5.57047 5.62237 5.66549 5.75440 5.80808 5.94990 5.98572 6.05271 6.16477 6.18592 6.26084 6.49407 6.76091 6.82452 6.87086 7.00931 7.08324 7.14724 7.29403 7.42484 7.55275 7.87938 8.62035 9.07711 9.65362 11.15796 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055489 B = 0.003614 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.483823 B = 7746.167072 C = 7968.730806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.095 3.905 3 H 0.082 0.918 4 N -0.843 5.843 5 C -0.091 4.091 6 H 0.083 0.917 7 C -0.136 4.136 8 C 0.042 3.958 9 N -0.533 5.533 10 C 0.054 3.946 11 C -0.115 4.115 12 C -0.102 4.102 13 C -0.014 4.014 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.049 3.951 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.340 0.660 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.362 16.431 5.387 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.017 4.017 3 H 0.100 0.900 4 N -0.373 5.373 5 C -0.111 4.111 6 H 0.101 0.899 7 C -0.175 4.175 8 C -0.086 4.086 9 N -0.257 5.257 10 C -0.074 4.074 11 C -0.153 4.153 12 C -0.140 4.140 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.078 4.078 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.362 16.580 4.547 25.893 hybrid contribution -1.487 -0.728 0.140 1.662 sum -20.849 15.852 4.686 26.607 Atomic orbital electron populations 1.22630 0.97709 1.02133 1.02109 1.21296 0.91885 0.98109 0.90396 0.90027 1.58917 1.67449 1.06666 1.04303 1.22348 0.96125 0.95514 0.97065 0.89867 1.22825 0.99046 0.95420 1.00203 1.22803 0.89716 0.96044 1.00003 1.63596 1.04220 1.07771 1.50098 1.22351 0.92738 0.95847 0.96463 1.21677 0.98702 0.96516 0.98388 1.21425 0.95478 0.97607 0.99462 1.19565 0.96602 0.94246 0.94691 1.21212 1.12851 1.17052 1.04535 0.91134 1.25051 0.94687 0.95799 0.98134 1.69923 1.23165 1.23590 1.37952 0.86758 0.80292 0.77274 0.84846 1.20310 1.21499 1.19000 1.23018 0.94063 0.93862 0.96872 0.92473 0.92871 0.92025 0.84777 0.84621 0.91329 0.91578 0.90934 0.92425 0.94893 0.91133 0.92825 0.91840 0.92897 0.93139 0.96830 0.97101 0.92842 0.91393 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 9.28 37.16 0.34 -0.78 16 2 C 0.10 0.69 3.32 -67.71 -0.22 0.46 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 N -0.84 -6.19 8.04 -4.67 -0.04 -6.23 16 5 C -0.09 -0.82 2.98 -88.48 -0.26 -1.08 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.14 -1.25 5.28 -24.91 -0.13 -1.38 16 8 C 0.04 0.50 6.21 -2.84 -0.02 0.49 16 9 N -0.53 -7.12 5.16 -231.24 -1.19 -8.31 16 10 C 0.05 0.80 4.54 -3.82 -0.02 0.78 16 11 C -0.11 -1.98 5.24 -26.73 -0.14 -2.12 16 12 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.36 9.66 -34.44 -0.33 -15.70 16 15 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.76 13.96 55.43 0.77 -27.99 16 18 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 22 C 0.05 0.56 6.09 -2.29 -0.01 0.55 16 23 H 0.06 0.36 7.32 -51.93 -0.38 -0.02 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.34 1.97 9.07 -39.29 -0.36 1.61 16 27 H 0.34 2.46 6.91 -39.29 -0.27 2.19 16 28 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 29 H 0.07 0.58 6.05 -51.93 -0.31 0.27 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.73 6.91 -51.93 -0.36 0.37 16 32 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 33 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 34 H 0.05 0.91 7.14 -51.93 -0.37 0.54 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.07 0.83 6.73 -51.93 -0.35 0.48 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -31.38 321.25 -9.24 -40.62 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.81 Total: -1.08 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.14 Total: -19.64 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.46 Total: -42.53 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.38 -9.24 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.361 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds