Wall clock time and date at job start Mon Mar 30 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47620 * 2 1 4 4 N 1.46898 * 109.47214 * 120.00398 * 2 1 3 5 5 C 1.53002 * 109.46794 * 240.00505 * 2 1 3 6 6 H 1.09001 * 110.87976 * 62.39081 * 5 2 1 7 7 C 1.55135 * 110.99062 * 298.54375 * 5 2 1 8 8 C 1.54322 * 103.02006 * 206.25834 * 7 5 2 9 9 N 1.47439 * 107.23490 * 22.28319 * 8 7 5 10 10 C 1.46901 * 110.99961 * 123.25626 * 9 8 7 11 11 C 1.53000 * 109.46769 * 69.87863 * 10 9 8 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00776 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99696 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47265 * 89.99852 * 18 16 14 20 20 H 1.48502 * 109.47140 * 209.99881 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99994 * 18 16 14 22 22 C 1.47853 * 108.56569 * 0.99003 * 9 8 7 23 23 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47008 * 299.99711 * 1 2 3 25 25 H 1.09003 * 109.47144 * 59.99676 * 1 2 3 26 26 H 1.00898 * 111.00433 * 296.04279 * 4 2 1 27 27 H 1.00897 * 110.99842 * 60.00142 * 4 2 1 28 28 H 1.09003 * 110.71015 * 87.87432 * 7 5 2 29 29 H 1.09004 * 110.85568 * 324.71096 * 7 5 2 30 30 H 1.09003 * 109.88473 * 262.87599 * 8 7 5 31 31 H 1.09003 * 110.01953 * 141.76715 * 8 7 5 32 32 H 1.09002 * 109.47401 * 309.87571 * 10 9 8 33 33 H 1.09001 * 109.46874 * 189.87583 * 10 9 8 34 34 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 35 35 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 38 38 H 1.08992 * 109.47098 * 299.99158 * 13 12 11 39 39 H 1.09001 * 109.47583 * 60.00267 * 13 12 11 40 40 H 0.96996 * 120.00667 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.36766 * 94.73414 * 22 9 8 42 42 H 1.08997 * 110.37443 * 217.07382 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0399 -0.7212 -1.2493 6 1 1.7244 -0.2013 -2.1540 7 6 1.5726 -2.2004 -1.2668 8 6 2.6560 -2.8972 -2.1166 9 7 3.8620 -2.0506 -2.0667 10 6 5.0159 -2.8073 -1.5628 11 6 5.4424 -3.8418 -2.6063 12 6 6.6438 -4.6304 -2.0812 13 6 7.0706 -5.6644 -3.1250 14 6 8.2544 -6.4407 -2.6081 15 1 8.6613 -6.2191 -1.6324 16 6 8.8174 -7.4347 -3.3801 17 7 9.8501 -8.1126 -2.9289 18 14 8.1132 -7.8186 -5.0672 19 1 8.7931 -6.9829 -6.0893 20 1 8.3289 -9.2545 -5.3786 21 1 6.6578 -7.5236 -5.0749 22 6 3.5803 -0.8801 -1.2084 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.7503 -0.1991 2.0372 27 1 1.6962 -1.6480 1.2226 28 1 0.5947 -2.2901 -1.7400 29 1 1.5502 -2.6122 -0.2578 30 1 2.3135 -2.9944 -3.1469 31 1 2.8769 -3.8821 -1.7050 32 1 4.7416 -3.3155 -0.6383 33 1 5.8426 -2.1236 -1.3700 34 1 4.6157 -4.5255 -2.7990 35 1 5.7167 -3.3337 -3.5307 36 1 7.4707 -3.9470 -1.8882 37 1 6.3690 -5.1386 -1.1569 38 1 6.2440 -6.3479 -3.3184 39 1 7.3456 -5.1559 -4.0490 40 1 10.2464 -8.8116 -3.4722 41 1 3.9154 -1.0682 -0.1884 42 1 4.0645 0.0101 -1.6098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385319097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:35 Heat of formation + Delta-G solvation = -43.060499 kcal Electronic energy + Delta-G solvation = -17319.542126 eV Core-core repulsion = 14718.286719 eV Total energy + Delta-G solvation = -2601.255407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45528 -37.45725 -36.08726 -34.40691 -32.27739 -30.13627 -29.91289 -28.96003 -26.16933 -23.78029 -23.30307 -21.74400 -21.40281 -20.08253 -18.83489 -17.83604 -16.84065 -16.46137 -16.29318 -15.74017 -15.30459 -14.84958 -14.60832 -14.39066 -14.26590 -13.98161 -13.91512 -13.59082 -13.20339 -13.08684 -12.72470 -12.68689 -12.35312 -12.31764 -11.92641 -11.76754 -11.69263 -11.48014 -11.44619 -11.36098 -11.26281 -11.11888 -10.76383 -9.57083 -9.15867 -8.29723 -6.33906 1.35881 1.37620 1.50478 2.36674 3.05427 3.06274 3.57536 3.66253 3.86665 3.96669 4.09609 4.21853 4.29263 4.39232 4.50754 4.52413 4.54925 4.58539 4.71618 4.75162 4.85672 4.89086 4.92251 5.01954 5.02292 5.10792 5.14904 5.16612 5.24713 5.26357 5.34824 5.43690 5.57628 5.64570 5.68382 6.14340 6.19856 6.29501 6.31052 6.61473 6.74152 7.30919 8.87363 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055489 B = 0.003614 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.483823 B = 7746.167072 C = 7968.730806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.100 3.900 3 H 0.082 0.918 4 N -0.853 5.853 5 C -0.084 4.084 6 H 0.086 0.914 7 C -0.128 4.128 8 C 0.037 3.963 9 N -0.543 5.543 10 C 0.063 3.937 11 C -0.102 4.102 12 C -0.095 4.095 13 C -0.011 4.011 14 C -0.535 4.535 15 H 0.030 0.970 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.247 1.247 22 C 0.049 3.951 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.348 0.652 27 H 0.340 0.660 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.267 0.733 41 H 0.060 0.940 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.719 17.379 4.369 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.012 4.012 3 H 0.100 0.900 4 N -0.384 5.384 5 C -0.104 4.104 6 H 0.104 0.896 7 C -0.167 4.167 8 C -0.091 4.091 9 N -0.267 5.267 10 C -0.066 4.066 11 C -0.140 4.140 12 C -0.133 4.133 13 C -0.048 4.048 14 C -0.573 4.573 15 H 0.048 0.952 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.171 1.171 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.162 0.838 27 H 0.154 0.846 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.736 17.552 3.545 28.162 hybrid contribution -0.682 -1.013 0.544 1.336 sum -22.418 16.540 4.088 28.158 Atomic orbital electron populations 1.22558 0.96474 1.02284 1.02661 1.21230 0.92739 0.97716 0.89525 0.90015 1.58903 1.67814 1.06896 1.04822 1.22320 0.94189 0.95682 0.98161 0.89567 1.22777 0.98793 0.95044 1.00044 1.22863 0.90012 0.95676 1.00538 1.63553 1.04336 1.08280 1.50564 1.22149 0.93556 0.95330 0.95515 1.21490 0.97042 0.96679 0.98740 1.21298 0.96884 0.96873 0.98222 1.19527 0.94696 0.94783 0.95832 1.21570 1.14501 1.18010 1.03248 0.95199 1.26077 0.94957 0.95480 1.03017 1.70075 1.24845 1.24470 1.40043 0.85599 0.80397 0.77430 0.78864 1.19075 1.20768 1.17059 1.23031 0.95985 0.92888 0.95966 0.92488 0.92105 0.91724 0.83793 0.84563 0.89794 0.91165 0.90925 0.93407 0.95068 0.91365 0.92423 0.91991 0.93474 0.93634 0.96379 0.96489 0.92466 0.92192 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.28 71.98 0.67 -1.05 16 2 C 0.10 1.24 3.32 44.92 0.15 1.38 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 N -0.85 -11.05 8.04 -168.68 -1.36 -12.40 16 5 C -0.08 -1.33 2.98 -9.41 -0.03 -1.36 16 6 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.13 -2.06 5.28 31.77 0.17 -1.90 16 8 C 0.04 0.82 6.21 86.65 0.54 1.35 16 9 N -0.54 -13.77 5.16 -885.51 -4.57 -18.34 16 10 C 0.06 1.81 4.54 86.30 0.39 2.20 16 11 C -0.10 -3.38 5.24 30.59 0.16 -3.22 16 12 C -0.09 -3.89 5.15 30.59 0.16 -3.73 16 13 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 14 C -0.54 -32.35 9.66 25.60 0.25 -32.10 16 15 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 16 C 0.00 0.06 5.47 84.65 0.46 0.53 16 17 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 18 Si 0.95 45.77 27.47 68.60 1.88 47.66 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 22 C 0.05 1.04 6.09 86.77 0.53 1.57 16 23 H 0.06 0.56 7.32 -2.39 -0.02 0.54 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.35 3.43 9.07 -89.70 -0.81 2.62 16 27 H 0.34 4.32 6.91 -89.70 -0.62 3.70 16 28 H 0.08 1.12 8.11 -2.39 -0.02 1.10 16 29 H 0.07 1.09 6.05 -2.38 -0.01 1.07 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.15 6.91 -2.39 -0.02 1.13 16 32 H 0.03 0.90 7.96 -2.39 -0.02 0.89 16 33 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.06 1.87 7.14 -2.39 -0.02 1.85 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 39 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 40 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.06 1.39 6.73 -2.39 -0.02 1.37 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -67.48 321.25 -0.69 -68.17 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.51 Total: 13.02 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 3.56 Total: -36.75 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -5.62 Total: -92.09 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.66 kcal Total: -67.48 -0.69 -68.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.111 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds