Wall clock time and date at job start Mon Mar 30 2020 03:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.46747 * 2 1 4 4 C 1.46898 * 110.99698 * 69.05201 * 3 2 1 5 5 C 1.52998 * 109.47478 * 66.04428 * 4 3 2 6 6 C 1.53004 * 109.47079 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46779 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46747 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00167 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99895 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99831 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00024 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47055 * 59.99758 * 12 10 8 14 14 H 1.48496 * 109.47230 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47092 * 300.00034 * 12 10 8 16 16 C 1.46892 * 111.00122 * 305.09456 * 3 2 1 17 17 H 1.09001 * 110.27151 * 204.74210 * 16 3 2 18 18 C 1.54593 * 110.31265 * 326.93549 * 16 3 2 19 19 C 1.54935 * 102.92557 * 140.87271 * 18 16 3 20 20 N 1.48810 * 103.34800 * 322.69584 * 19 18 16 21 21 C 1.47902 * 105.67838 * 38.97072 * 20 19 18 22 22 H 1.08999 * 109.46541 * 202.62413 * 1 2 3 23 23 H 1.08997 * 109.47386 * 322.62544 * 1 2 3 24 24 H 1.09000 * 109.46940 * 82.62517 * 1 2 3 25 25 H 1.08998 * 109.47200 * 240.00316 * 2 1 3 26 26 H 1.09000 * 109.47310 * 120.00189 * 2 1 3 27 27 H 1.09001 * 109.47215 * 186.04198 * 4 3 2 28 28 H 1.09001 * 109.46970 * 306.03979 * 4 3 2 29 29 H 1.09005 * 109.46984 * 299.99666 * 5 4 3 30 30 H 1.09001 * 109.47387 * 59.99806 * 5 4 3 31 31 H 1.09005 * 109.46700 * 299.99547 * 6 5 4 32 32 H 1.08989 * 109.47562 * 59.99902 * 6 5 4 33 33 H 1.08994 * 109.47283 * 299.99806 * 7 6 5 34 34 H 1.08996 * 109.47272 * 60.00033 * 7 6 5 35 35 H 0.96995 * 119.99642 * 180.02562 * 11 10 8 36 36 H 1.08993 * 110.72814 * 259.23535 * 18 16 3 37 37 H 1.09004 * 110.72160 * 22.33968 * 18 16 3 38 38 H 1.08998 * 110.66377 * 81.02001 * 19 18 16 39 39 H 1.08996 * 110.67138 * 203.98518 * 19 18 16 40 40 H 1.00902 * 110.95913 * 278.57292 * 20 19 18 41 41 H 1.08999 * 109.91573 * 215.45210 * 21 20 19 42 42 H 1.09006 * 109.91722 * 94.36418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7328 2.0448 1.2808 5 6 2.5409 1.3730 2.3928 6 6 2.2415 2.0598 3.7269 7 6 3.0492 1.3875 4.8390 8 6 2.7548 2.0644 6.1529 9 1 2.0614 2.8915 6.1909 10 6 3.3716 1.6283 7.3064 11 7 4.2164 0.6214 7.2601 12 14 3.0062 2.4668 8.9352 13 1 1.5569 2.3509 9.2374 14 1 3.7902 1.8145 10.0145 15 1 3.3806 3.9012 8.8484 16 6 1.4517 2.1442 -1.1220 17 1 2.1052 2.9763 -1.3842 18 6 1.2404 1.2198 -2.3430 19 6 -0.1095 1.7132 -2.9217 20 7 -0.9051 2.0399 -1.7073 21 6 0.0468 2.6611 -0.7610 22 1 -0.3632 -0.9486 0.3953 23 1 -0.3634 0.8166 0.6238 24 1 -0.3633 0.1319 -1.0192 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0080 3.0975 1.2169 28 1 0.6690 1.9602 1.5028 29 1 2.2656 0.3202 2.4567 30 1 3.6047 1.4576 2.1708 31 1 2.5165 3.1127 3.6632 32 1 1.1778 1.9748 3.9487 33 1 2.7740 0.3348 4.9025 34 1 4.1131 1.4722 4.6174 35 1 4.6500 0.3145 8.0716 36 1 2.0423 1.3507 -3.0694 37 1 1.1713 0.1778 -2.0305 38 1 0.0367 2.6034 -3.5335 39 1 -0.5911 0.9251 -3.5005 40 1 -1.3175 1.2083 -1.3115 41 1 -0.2036 2.3735 0.2601 42 1 0.0136 3.7462 -0.8596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385337381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:37 Heat of formation + Delta-G solvation = 24.544917 kcal Electronic energy + Delta-G solvation = -17913.950300 eV Core-core repulsion = 15315.626484 eV Total energy + Delta-G solvation = -2598.323816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70322 -36.30456 -34.20341 -32.27030 -30.87825 -30.09614 -28.64002 -26.78471 -24.72177 -23.05359 -22.23387 -21.09072 -20.01642 -19.08609 -17.00330 -16.25146 -16.15304 -15.83117 -15.11027 -14.45935 -14.30793 -14.03343 -13.64043 -13.13402 -12.60504 -12.45503 -12.24768 -12.18073 -11.94639 -11.67087 -11.39456 -11.32455 -11.16024 -11.08662 -10.88215 -10.50518 -10.44865 -10.42376 -10.25294 -9.58197 -9.24792 -9.00753 -8.89265 -8.31194 -8.13009 -5.96415 -3.98679 3.35080 3.39254 3.41858 3.78625 4.15116 4.44217 4.48857 4.63898 4.85550 4.93948 4.96223 5.11516 5.16152 5.25703 5.37243 5.39042 5.42144 5.50890 5.62058 5.67452 5.70719 5.74062 5.93395 5.97235 6.01222 6.13800 6.17593 6.27553 6.46738 6.53706 6.82964 6.96970 7.00883 7.11118 7.18037 7.27430 7.72177 7.88345 8.04649 8.47434 9.08647 9.65067 11.14918 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053614 B = 0.003933 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.127363 B = 7118.114630 C = 7273.762811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 N -0.527 5.527 4 C 0.049 3.951 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.022 3.978 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.057 3.943 17 H 0.089 0.911 18 C -0.173 4.173 19 C 0.041 3.959 20 N -0.680 5.680 21 C -0.002 4.002 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.340 0.660 41 H 0.085 0.915 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 -0.020 -19.503 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.089 4.089 3 N -0.250 5.250 4 C -0.078 4.078 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.015 4.015 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.053 4.053 17 H 0.107 0.893 18 C -0.212 4.212 19 C -0.089 4.089 20 N -0.312 5.312 21 C -0.133 4.133 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.342 0.481 -19.692 21.022 hybrid contribution -0.432 -0.285 1.370 1.465 sum -7.775 0.196 -18.322 19.904 Atomic orbital electron populations 1.23144 0.98911 1.03048 1.02258 1.22325 0.92583 0.90974 1.02989 1.62474 1.57752 1.01912 1.02813 1.22376 0.98260 0.98694 0.88461 1.21685 1.00084 0.99379 0.93960 1.21599 1.00077 0.99149 0.93899 1.19078 0.95051 0.95641 0.91743 1.21258 1.25404 1.16457 0.92798 0.92833 1.25031 0.95199 0.95139 0.99127 1.69960 1.28901 1.26382 1.28342 0.86673 0.78311 0.79715 0.83384 1.20287 1.21301 1.20245 1.23018 0.94673 0.96479 0.91152 0.89317 1.23673 0.98937 1.01148 0.97392 1.23147 0.91683 1.00396 0.93645 1.62934 1.30284 1.31717 1.06269 1.23760 0.91439 1.00539 0.97577 0.92127 0.91383 0.91744 0.90414 0.89796 0.90935 0.94262 0.92586 0.91717 0.93463 0.93758 0.96791 0.96628 0.93002 0.90693 0.89112 0.90282 0.90903 0.83908 0.89686 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.14 7.51 37.16 0.28 -1.86 16 2 C 0.04 0.44 5.36 -3.82 -0.02 0.42 16 3 N -0.53 -6.58 4.94 -225.03 -1.11 -7.69 16 4 C 0.05 0.69 3.94 -3.83 -0.02 0.67 16 5 C -0.11 -1.94 5.16 -26.73 -0.14 -2.08 16 6 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 8 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C 0.06 0.61 3.48 -66.36 -0.23 0.38 16 17 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.17 -1.53 5.74 -24.87 -0.14 -1.68 16 19 C 0.04 0.34 7.22 -1.74 -0.01 0.33 16 20 N -0.68 -6.73 7.36 -109.88 -0.81 -7.54 16 21 C 0.00 -0.03 5.67 -2.76 -0.02 -0.04 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.76 4.26 -51.93 -0.22 0.53 16 24 H 0.06 0.57 3.21 -51.93 -0.17 0.40 16 25 H 0.08 0.80 6.11 -51.93 -0.32 0.48 16 26 H 0.08 1.06 6.11 -51.93 -0.32 0.75 16 27 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.04 0.54 4.75 -51.93 -0.25 0.29 16 29 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.90 8.14 -51.94 -0.42 0.48 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.81 3.87 -51.93 -0.20 0.61 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.34 3.16 5.70 -39.29 -0.22 2.94 16 41 H 0.09 0.97 3.53 -51.93 -0.18 0.79 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -30.10 302.84 -9.44 -39.55 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.82 Total: 0.50 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.98 Total: -19.65 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -1.18 Total: -41.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.10 -9.44 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.094 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds