Wall clock time and date at job start Mon Mar 30 2020 03:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.46747 * 2 1 4 4 C 1.46898 * 110.99698 * 69.05201 * 3 2 1 5 5 C 1.52998 * 109.47478 * 66.04428 * 4 3 2 6 6 C 1.53004 * 109.47079 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46779 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46747 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00167 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99895 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99831 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00024 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47055 * 59.99758 * 12 10 8 14 14 H 1.48496 * 109.47230 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47092 * 300.00034 * 12 10 8 16 16 C 1.46892 * 111.00122 * 305.09456 * 3 2 1 17 17 H 1.09001 * 110.27151 * 204.74210 * 16 3 2 18 18 C 1.54593 * 110.31265 * 326.93549 * 16 3 2 19 19 C 1.54935 * 102.92557 * 140.87271 * 18 16 3 20 20 N 1.48810 * 103.34800 * 322.69584 * 19 18 16 21 21 C 1.47902 * 105.67838 * 38.97072 * 20 19 18 22 22 H 1.08999 * 109.46541 * 202.62413 * 1 2 3 23 23 H 1.08997 * 109.47386 * 322.62544 * 1 2 3 24 24 H 1.09000 * 109.46940 * 82.62517 * 1 2 3 25 25 H 1.08998 * 109.47200 * 240.00316 * 2 1 3 26 26 H 1.09000 * 109.47310 * 120.00189 * 2 1 3 27 27 H 1.09001 * 109.47215 * 186.04198 * 4 3 2 28 28 H 1.09001 * 109.46970 * 306.03979 * 4 3 2 29 29 H 1.09005 * 109.46984 * 299.99666 * 5 4 3 30 30 H 1.09001 * 109.47387 * 59.99806 * 5 4 3 31 31 H 1.09005 * 109.46700 * 299.99547 * 6 5 4 32 32 H 1.08989 * 109.47562 * 59.99902 * 6 5 4 33 33 H 1.08994 * 109.47283 * 299.99806 * 7 6 5 34 34 H 1.08996 * 109.47272 * 60.00033 * 7 6 5 35 35 H 0.96995 * 119.99642 * 180.02562 * 11 10 8 36 36 H 1.08993 * 110.72814 * 259.23535 * 18 16 3 37 37 H 1.09004 * 110.72160 * 22.33968 * 18 16 3 38 38 H 1.08998 * 110.66377 * 81.02001 * 19 18 16 39 39 H 1.08996 * 110.67138 * 203.98518 * 19 18 16 40 40 H 1.00902 * 110.95913 * 278.57292 * 20 19 18 41 41 H 1.08999 * 109.91573 * 215.45210 * 21 20 19 42 42 H 1.09006 * 109.91722 * 94.36418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7328 2.0448 1.2808 5 6 2.5409 1.3730 2.3928 6 6 2.2415 2.0598 3.7269 7 6 3.0492 1.3875 4.8390 8 6 2.7548 2.0644 6.1529 9 1 2.0614 2.8915 6.1909 10 6 3.3716 1.6283 7.3064 11 7 4.2164 0.6214 7.2601 12 14 3.0062 2.4668 8.9352 13 1 1.5569 2.3509 9.2374 14 1 3.7902 1.8145 10.0145 15 1 3.3806 3.9012 8.8484 16 6 1.4517 2.1442 -1.1220 17 1 2.1052 2.9763 -1.3842 18 6 1.2404 1.2198 -2.3430 19 6 -0.1095 1.7132 -2.9217 20 7 -0.9051 2.0399 -1.7073 21 6 0.0468 2.6611 -0.7610 22 1 -0.3632 -0.9486 0.3953 23 1 -0.3634 0.8166 0.6238 24 1 -0.3633 0.1319 -1.0192 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0080 3.0975 1.2169 28 1 0.6690 1.9602 1.5028 29 1 2.2656 0.3202 2.4567 30 1 3.6047 1.4576 2.1708 31 1 2.5165 3.1127 3.6632 32 1 1.1778 1.9748 3.9487 33 1 2.7740 0.3348 4.9025 34 1 4.1131 1.4722 4.6174 35 1 4.6500 0.3145 8.0716 36 1 2.0423 1.3507 -3.0694 37 1 1.1713 0.1778 -2.0305 38 1 0.0367 2.6034 -3.5335 39 1 -0.5911 0.9251 -3.5005 40 1 -1.3175 1.2083 -1.3115 41 1 -0.2036 2.3735 0.2601 42 1 0.0136 3.7462 -0.8596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385337381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:36 Heat of formation + Delta-G solvation = 3.689520 kcal Electronic energy + Delta-G solvation = -17914.854658 eV Core-core repulsion = 15315.626484 eV Total energy + Delta-G solvation = -2599.228174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.57015 -37.43355 -35.88676 -34.13823 -31.82929 -31.13369 -29.94823 -27.97584 -26.26891 -24.34135 -23.18718 -22.28011 -21.59248 -20.05611 -18.42845 -17.79421 -17.22069 -16.74518 -16.52061 -15.98526 -15.67203 -15.08250 -14.56576 -14.41152 -13.99210 -13.79576 -13.68966 -13.30301 -12.98376 -12.97399 -12.80195 -12.58878 -12.38285 -12.23250 -12.17951 -12.01092 -11.93638 -11.74525 -11.33027 -11.24320 -11.18518 -10.97292 -10.55189 -9.69621 -9.06355 -8.20020 -6.31712 1.39274 1.42724 1.50706 2.40730 2.86152 3.12591 3.37108 3.66667 3.80692 3.94895 4.05702 4.16606 4.20903 4.26249 4.34915 4.39665 4.55240 4.58151 4.59649 4.67500 4.73654 4.85938 4.91716 4.92937 4.99848 5.02530 5.14843 5.18345 5.26653 5.26856 5.30263 5.39738 5.54939 5.71352 5.77213 5.86330 6.12026 6.15934 6.25699 6.40483 6.85617 7.37629 8.91711 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053614 B = 0.003933 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.127363 B = 7118.114630 C = 7273.762811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 N -0.536 5.536 4 C 0.061 3.939 5 C -0.102 4.102 6 C -0.096 4.096 7 C 0.024 3.976 8 C -0.546 4.546 9 H 0.060 0.940 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.966 3.034 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.266 1.266 16 C 0.055 3.945 17 H 0.085 0.915 18 C -0.166 4.166 19 C 0.044 3.956 20 N -0.687 5.687 21 C 0.002 3.998 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.049 0.951 33 H -0.011 1.011 34 H -0.012 1.012 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.343 0.657 41 H 0.076 0.924 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 0.583 -20.309 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.090 4.090 3 N -0.259 5.259 4 C -0.067 4.067 5 C -0.140 4.140 6 C -0.134 4.134 7 C -0.013 4.013 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.200 4.200 11 N -0.575 5.575 12 Si 0.790 3.210 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.054 4.054 17 H 0.103 0.897 18 C -0.205 4.205 19 C -0.086 4.086 20 N -0.319 5.319 21 C -0.129 4.129 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.164 0.836 41 H 0.095 0.905 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.545 1.087 -20.520 22.254 hybrid contribution -0.033 -0.506 1.581 1.660 sum -8.578 0.582 -18.939 20.799 Atomic orbital electron populations 1.23070 0.97713 1.02879 1.02978 1.22355 0.93590 0.90253 1.02838 1.62398 1.58512 1.02522 1.02481 1.22136 0.97838 0.98358 0.88336 1.21500 0.99933 0.99182 0.93403 1.21398 0.99222 0.98981 0.93832 1.19004 0.94239 0.94643 0.93409 1.21722 1.25717 1.16908 0.94081 0.92186 1.26020 0.94778 0.95737 1.03436 1.70100 1.29881 1.27871 1.29621 0.85491 0.78609 0.78805 0.78093 1.19094 1.20761 1.19109 1.23063 0.94554 0.96690 0.91131 0.89678 1.23636 0.99590 1.00687 0.96592 1.23199 0.91155 1.01096 0.93121 1.62933 1.30360 1.32052 1.06576 1.23658 0.91504 1.00368 0.97337 0.91639 0.92451 0.90288 0.88977 0.91589 0.90799 0.93637 0.92880 0.92915 0.93099 0.93204 0.99289 0.99346 0.92764 0.89921 0.88921 0.90082 0.89136 0.83552 0.90550 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.81 7.51 71.98 0.54 -3.27 16 2 C 0.04 0.80 5.36 86.30 0.46 1.26 16 3 N -0.54 -12.85 4.94 -865.86 -4.28 -17.13 16 4 C 0.06 1.66 3.94 86.30 0.34 2.00 16 5 C -0.10 -3.55 5.16 30.59 0.16 -3.39 16 6 C -0.10 -4.03 5.15 30.60 0.16 -3.87 16 7 C 0.02 1.32 4.97 29.85 0.15 1.47 16 8 C -0.55 -31.95 9.11 25.60 0.23 -31.72 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 10 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 11 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 12 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 C 0.06 1.10 3.48 45.79 0.16 1.26 16 17 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.17 -2.55 5.74 31.80 0.18 -2.37 16 19 C 0.04 0.61 7.22 86.59 0.63 1.24 16 20 N -0.69 -12.14 7.36 -501.54 -3.69 -15.82 16 21 C 0.00 0.05 5.67 86.44 0.49 0.54 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.20 4.26 -2.39 -0.01 1.19 16 24 H 0.08 1.21 3.21 -2.39 -0.01 1.20 16 25 H 0.09 1.72 6.11 -2.39 -0.01 1.71 16 26 H 0.07 1.66 6.11 -2.39 -0.01 1.65 16 27 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 28 H 0.05 1.21 4.75 -2.39 -0.01 1.20 16 29 H 0.05 1.86 6.38 -2.38 -0.02 1.85 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.40 3.87 -2.38 -0.01 1.39 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.34 5.61 5.70 -89.69 -0.51 5.10 16 41 H 0.08 1.65 3.53 -2.39 -0.01 1.65 16 42 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -64.58 302.84 -1.20 -65.79 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.49 Total: 14.60 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.96 Total: -36.52 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -7.68 Total: -90.80 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.58 -1.20 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.475 kcal (2) G-P(sol) polarization free energy of solvation -64.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds